Mercurial > repos > devteam > samtools_flagstat
annotate test-data/samtools_flagstat_out1.txt @ 3:cc61ade70eb8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
| author | iuc |
|---|---|
| date | Tue, 09 May 2017 11:18:29 -0400 |
| parents | 0072bf593791 |
| children | fe34990e5ce7 |
| rev | line source |
|---|---|
| 2 | 1 200 + 0 in total (QC-passed reads + QC-failed reads) |
| 2 0 + 0 secondary | |
| 3 0 + 0 supplementary | |
| 0 | 4 0 + 0 duplicates |
|
3
cc61ade70eb8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents:
2
diff
changeset
|
5 25 + 0 mapped (12.50% : N/A) |
| 2 | 6 200 + 0 paired in sequencing |
| 7 100 + 0 read1 | |
| 8 100 + 0 read2 | |
|
3
cc61ade70eb8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents:
2
diff
changeset
|
9 0 + 0 properly paired (0.00% : N/A) |
| 0 | 10 0 + 0 with itself and mate mapped |
|
3
cc61ade70eb8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents:
2
diff
changeset
|
11 25 + 0 singletons (12.50% : N/A) |
| 0 | 12 0 + 0 with mate mapped to a different chr |
| 13 0 + 0 with mate mapped to a different chr (mapQ>=5) |