Mercurial > repos > dfornika > mentalist

annotate data_managers/data_manager_conf.xml @ 3:4ea71c8e2db0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f161d96d4d4dcd11a53eeda99595d5fd22891612-dirty
author dfornika
date Wed, 11 Apr 2018 14:44:29 -0400
parents c6a98b93e569
children af77acce864b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
1 <?xml version="1.0"?>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
2 <data_managers>
3
4ea71c8e2db0 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f161d96d4d4dcd11a53eeda99595d5fd22891612-dirty
dfornika
parents: 1
diff changeset
3 <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.5">
0
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
4 <data_table name="mentalist_databases">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
5 <output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
6 <column name="value" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
7 <column name="name" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
8 <column name="path" output_ref="out_file">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
9 <move type="directory" relativize_symlinks="True">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
11 </move>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
13 <value_translation type="function">abspath</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
14 </column>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
15 </output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
16 </data_table>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
17 </data_manager>
3
4ea71c8e2db0 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f161d96d4d4dcd11a53eeda99595d5fd22891612-dirty
dfornika
parents: 1
diff changeset
18 <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.1.5">
0
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
19 <data_table name="mentalist_databases">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
20 <output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
21 <column name="value" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
22 <column name="name" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
23 <column name="path" output_ref="out_file">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
24 <move type="directory" relativize_symlinks="True">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
26 </move>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
28 <value_translation type="function">abspath</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
29 </column>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
30 </output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
31 </data_table>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
32 </data_manager>
3
4ea71c8e2db0 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f161d96d4d4dcd11a53eeda99595d5fd22891612-dirty
dfornika
parents: 1
diff changeset
33 <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.5">
1
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
34 <data_table name="mentalist_databases">
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
35 <output>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
36 <column name="value" />
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
37 <column name="name" />
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
38 <column name="path" output_ref="out_file">
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
39 <move type="directory" relativize_symlinks="True">
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
41 </move>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
43 <value_translation type="function">abspath</value_translation>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
44 </column>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
45 </output>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
46 </data_table>
c6a98b93e569 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
dfornika
parents: 0
diff changeset
47 </data_manager>
3
4ea71c8e2db0 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f161d96d4d4dcd11a53eeda99595d5fd22891612-dirty
dfornika
parents: 1
diff changeset
48 <data_manager tool_file="data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml" id="mentalist_download_enterobase" version="0.1.5">
0
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
49 <data_table name="mentalist_databases">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
50 <output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
51 <column name="value" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
52 <column name="name" />
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
53 <column name="path" output_ref="out_file">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
54 <move type="directory" relativize_symlinks="True">
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
55 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
56 </move>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
57 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
58 <value_translation type="function">abspath</value_translation>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
59 </column>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
60 </output>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
61 </data_table>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
62 </data_manager>
1d9e3950ce61 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
dfornika
parents:
diff changeset
63 </data_managers>