Mercurial > repos > ebi-gxa > scanpy_compute_graph
changeset 15:3cf0177ed87e draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty"
| author | ebi-gxa |
|---|---|
| date | Wed, 30 Sep 2020 11:16:35 +0000 |
| parents | a57b128ea4f6 |
| children | 087a7edb0995 |
| files | scanpy-neighbours.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/scanpy-neighbours.xml Tue Sep 29 14:11:29 2020 +0000 +++ b/scanpy-neighbours.xml Wed Sep 30 11:16:35 2020 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> +<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@"> <description>to derive kNN graph</description> <macros> <import>scanpy_macros2.xml</import> @@ -51,7 +51,7 @@ <when value="true"/> <when value="false"> <param name="key_added" argument="--key-added" type="text" optional="true" label="Key added" - help="If not specified, the neighbors data is stored in .uns[‘neighbors’], distances and connectivities are stored in .obsp[‘distances’] and .obsp[‘connectivities’] respectively. If specified, the neighbors data is added to .uns[key_added], distances are stored in .obsp[key_added+’_distances’] and connectivities in .obsp[key_added+’_connectivities’]." value='neighbours' /> + help="If not specified, the neighbors data is stored in .uns[‘neighbors’], distances and connectivities are stored in .obsp[‘distances’] and .obsp[‘connectivities’] respectively. If specified, the neighbors data is added to .uns[key_added], distances are stored in .obsp[key_added+’_distances’] and connectivities in .obsp[key_added+’_connectivities’]." value='' /> <param name="n_neighbors" argument="--n-neighbors" type="integer" value="15" label="Maximum number of neighbors used"/> <param name="n_neighbors_file" argument="--n-neighbors" type="data" format="txt,tsv" optional="true" label="File with n_neighbours, use with parameter iterator. Overrides the n_neighbors setting"/>