Mercurial > repos > ebi-gxa > scanpy_filter_genes
changeset 7:0bba942e0869 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0a162684a5859a53eefb14af11ba8ec64d42b213-dirty
| author | ebi-gxa |
|---|---|
| date | Wed, 20 Nov 2019 06:32:34 -0500 |
| parents | cb55f68ea1d7 |
| children | 88bccd53d18a |
| files | scanpy-filter-genes.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/scanpy-filter-genes.xml Wed Nov 20 05:47:46 2019 -0500 +++ b/scanpy-filter-genes.xml Wed Nov 20 06:32:34 2019 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy4"> +<tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy5"> <description>based on counts and numbers of cells expressed</description> <macros> <import>scanpy_macros2.xml</import> @@ -9,15 +9,15 @@ ln -s '${input_obj_file}' input.h5 && PYTHONIOENCODING=utf-8 scanpy-filter-genes #if $parameters - #set pars = ' '.join(['--param g:{name} {min} {max}'.format(**$p) for $p in $parameters]) + #set pars = ' '.join(["--param 'g:{name}' {min} {max}".format(**$p) for $p in $parameters]) ${pars} #end if #if $categories - #set cats = ' '.join(["--category g:{name} '{negate}{values}'".format(**$c) for $c in $categories]) + #set cats = ' '.join(["--category 'g:{name}' '{negate}{values}'".format(**$c) for $c in $categories]) ${cats} #end if #if $subsets - #set subs = ' '.join(['--subset g:{name} {subset}'.format(**$s) for $s in $subsets]) + #set subs = ' '.join(["--subset 'g:{name}' '{subset}'".format(**$s) for $s in $subsets]) ${subs} #end if @INPUT_OPTS@