Mercurial > repos > ebi-gxa > scanpy_parameter_iterator
changeset 12:7c4d44c14ceb draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit dcb8b19d34c3e2bf822996ca2e80de111c30b27e"
| author | ebi-gxa |
|---|---|
| date | Mon, 08 Jun 2020 04:43:24 -0400 |
| parents | 645f12f44a6d |
| children | f2410ed604dc |
| files | scanpy-parameter-iterator.xml |
| diffstat | 1 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/scanpy-parameter-iterator.xml Fri Jun 05 09:11:28 2020 -0400 +++ b/scanpy-parameter-iterator.xml Mon Jun 08 04:43:24 2020 -0400 @@ -1,4 +1,4 @@ -<tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy1"> +<tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy2"> <description>produce an iteration over a defined parameter</description> <macros> <import>scanpy_macros.xml</import> @@ -20,9 +20,10 @@ ]]></command> <inputs> - <param type="select" name="parameter_name" label="Choose the format of the expression data" help="Use compressed txt, Scanpy or Seurat objects"> + <param type="select" name="parameter_name" label="Parameter name" help="Select a type of parameter"> <option value="perplexity" selected="True">Perplexity</option> <option value="resolution">Resolution</option> + <option value="n_neighbors">Number of neighbors</option> </param> <conditional name="input_type"> <param type="select" name="parameter_values" label="Choose the format of the input values" help="step increase values or list of all the parameter values"> @@ -66,8 +67,8 @@ **What it does** -Given start, step and end, it will iterate parameters for either perplexity or -resolution. +Given start, step and end, it will iterate parameters for either perplexity (for t-SNE), resolution (clustering) +or number of neighbours (neighbour graph construction). **Inputs**