Mercurial > repos > ebi-gxa > seurat_export_cellbrowser

diff seurat_export_cellbrowser.xml @ 4:e7d338f8c4fc draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:47:13 +0000
parents 9e1c4d2d0776
children 249392cd0d99
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line diff
--- a/seurat_export_cellbrowser.xml	Sat Jul 11 08:42:05 2020 -0400
+++ b/seurat_export_cellbrowser.xml	Fri Nov 27 13:47:13 2020 +0000
@@ -24,7 +24,7 @@
 
     <inputs>
         <expand macro="input_object_params"/>
-        <param name="markers_file" type="data" format="txt" label="Marker genes file from Seurat" />
+        <param name="markers_file" type="data" optional="True" format="txt" label="Marker genes file from Seurat" />
     </inputs>
 
     <outputs>
@@ -33,9 +33,8 @@
 
     <tests>
         <test>
-            <param name="rds_input" ftype="rdata" value="out_runtsne.rds"/>
-            <param name="markers_file" ftype="txt" value="out_markers.csv"/>
-            <output name="output" ftype="tar" value="out_cellbrowser_bundle.tar"/>
+            <param name="rds_seurat_file" ftype="rdata" value="tsne_seurat.rds"/>
+            <output name="output" value="html_out" compare="sim_size" delta="1000000"/>
         </test>
     </tests>
     <help><![CDATA[