hmmer: hmmpress.xml annotate

annotate hmmpress.xml @ 1:66f8262e1686

add datatype

author	eskirton@lbl.gov
date	Mon, 05 Mar 2012 22:51:04 -0800
parents	c16d8db9338a
children

rev	line source
0 c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	1 <tool id="hmmpress" name="hmmpress" version="1.0.0">
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	2 <description>Compress profile db</description>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	3 <command interpreter="perl">hmmpress_wrapper.pl $infile $outfile $outfile.extra_files_path</command>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	4 <inputs>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	5 <param name="infile" type="data" format="hmm" label="HMM profile Db" help="Created by hmmbuild" />
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	6 </inputs>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	7 <outputs>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	8 <data name="outfile" format="hmmpressed" />
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	9 </outputs>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	10 <help>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	11 What It Does
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	12
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	13 Starting from a profile database in standard HMMER3 format, construct binary compressed datafiles for hmmscan.
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	14
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	15 The hmmpress step is required for hmmscan to work.
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	16 </help>
c16d8db9338a init repo eskirton@lbl.gov parents: diff changeset	17 </tool>