annotate test-data/model/SPIKE_SARS2.hhr @ 0:c3e9ffb4c98a draft

"planemo upload commit 6158473dbced09024b0a805a7df2c93d47705d87"

Query         sp|P0DTC2|SPIKE_SARS2 Spike glycoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=S PE=1 SV=1
Match_columns 1273
No_of_seqs    1 out of 1
Neff          1
Searched_HMMs 82491
Date          Thu Nov 12 20:44:30 2020
Command       hhsearch -e 0.001 -i /galaxy-repl/main/files/047/416/dataset_47416633.dat -d hhdb -o /galaxy-repl/main/files/047/416/dataset_47416669.dat 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 6X29_A Spike glycoprotein; Tri 100.0  3E-269  4E-274 2251.1   0.0 1198   16-1213    1-1198(1273)
  2 6CS2_B Spike glycoprotein,Enve 100.0  3E-221  4E-226 1857.5   0.0 1161   31-1213   22-1182(1215)
  3 6Q04_B Spike glycoprotein; Cor 100.0  2E-204  2E-209 1723.9   0.0 1150   31-1224   65-1321(1359)
  4 5I08_C Spike glycoprotein; cor 100.0  2E-199  2E-204 1685.1   0.0 1142   30-1223   29-1293(1299)
  5 5X5F_B S protein; MERS-CoV, sp 100.0  6E-198  7E-203 1670.1   0.0 1163   14-1220   12-1286(1323)
  6 6VSJ_A Spike glycoprotein, Car 100.0  2E-195  3E-200 1649.5   0.0 1145    9-1204   22-1267(1275)
  7 6VSJ_C Spike glycoprotein, Car 100.0  2E-195  3E-200 1649.5   0.0 1145    9-1204   22-1267(1275)
  8 6OHW_A Spike surface glycoprot 100.0  7E-190  9E-195 1602.1   0.0 1144    2-1204   13-1299(1322)
  9 6NZK_A Spike surface glycoprot 100.0  7E-190  9E-195 1602.1   0.0 1144    2-1204   13-1299(1322)
 10 6M15_A Spike glycoprotein; VIR 100.0  6E-154  7E-159 1294.0   0.0  832  273-1215  216-1070(1118)
 11 6M15_B Spike glycoprotein; VIR 100.0  6E-154  7E-159 1294.0   0.0  832  273-1215  216-1070(1118)
 12 6JX7_A Feline Infectious Perit 100.0  2E-132  2E-137 1149.2   0.0  664  525-1216  674-1394(1468)
 13 5SZS_A Spike glycoprotein; cor 100.0  7E-131  9E-136 1128.9   0.0  662  505-1215  575-1283(1325)
 14 6IXB_B Spike glycoprotein; Alp 100.0  8E-129  1E-133 1101.7   0.0  647  518-1214  426-1116(1116)
 15 6CV0_A Spike protein; infectio 100.0  3E-125  3E-130 1068.9   0.0  651  524-1212  399-1074(1105)
 16 6VV5_C Spike glycoprotein; gly 100.0  2E-124  2E-129 1078.6   0.0  641  521-1213  614-1309(1356)
 17 6M3W_B Spike glycoprotein,Spik 100.0  2E-124  2E-129 1000.4   0.0  491  706-1196    1-491 (491)
 18 6U7K_C Spike glycoprotein; PED 100.0  1E-122  1E-127 1065.5   0.0  641  521-1213  629-1324(1399)
 19 6BFU_C Spike protein; coronavi 100.0  4E-119  4E-124 1017.5   0.0  746  267-1148  240-1022(1024)
 20 6B3O_B Spike glycoprotein; Cor 100.0  7E-117  9E-122  954.9   0.0  497  703-1203   45-560 (605)
 21 6PZ8_A S protein, G2 heavy cha 100.0  8E-112  1E-116  897.4   0.0  445  694-1140   12-470 (472)
 22 6PZ8_F S protein, G2 heavy cha 100.0 3.1E-74 3.8E-79  636.3   0.0  621   14-676    12-724 (726)
 23 7BZ5_A Spike protein S1, Heavy 100.0 3.5E-52 4.2E-57  416.5   0.0  225  319-543     1-225 (229)
 24 6YZ5_E Spike glycoprotein, Nan 100.0 3.5E-51 4.3E-56  405.6   0.0  205  330-534     1-205 (210)
 25 6YLA_E SARS-CoV-2 RBD, Heavy C 100.0 3.8E-51 4.6E-56  406.0   0.0  207  328-534     2-208 (213)
 26 6ZFO_A SARS-CoV-2 RBD, Nanobod 100.0 2.3E-47 2.8E-52  375.2   0.0  194  333-526     1-194 (194)
 27 2GHV_C Spike glycoprotein; SAR 100.0 3.9E-37 4.7E-42  305.0   0.0  197  330-527     4-200 (203)
 28 1WYY_A E2 Glycoprotein; membra 100.0 2.3E-36 2.8E-41  288.5   0.0   99  903-1001    3-101 (149)
 29 1WYY_B E2 Glycoprotein; membra 100.0 2.3E-36 2.8E-41  288.5   0.0   99  903-1001    3-101 (149)
 30 5X4S_A Spike glycoprotein; SAR 100.0 1.1E-34 1.4E-39  298.0   0.0  261   30-307    21-281 (285)
 31 5KWB_A Spike glycoprotein; Cor 100.0 1.2E-33 1.4E-38  297.9   0.0  271  316-592     1-370 (371)
 32 6LXT_F Spike protein S2; 2019-  99.9 2.8E-28 3.4E-33  230.5   0.0  112  910-1021    1-113 (132)
 33 6LXT_C 2019-nCoV S2 subunit; 2  99.9 2.8E-28 3.4E-33  230.5   0.0  112  910-1021    1-113 (132)
 34 6C6Z_A Spike protein, CDC2-C2   99.9 6.9E-26 8.3E-31  228.8   0.0  148  319-472     1-148 (231)
 35 5XGR_H Spike protein S1; MERS-  99.8 9.7E-26 1.2E-30  224.7   0.0  181  335-528     2-198 (204)
 36 4QZV_B Dipeptidyl peptidase 4   99.8 4.1E-25   5E-30  224.7   0.0  137  319-458     1-139 (246)
 37 4L3N_B S protein; beta-sheet f  99.8 2.3E-24 2.8E-29  216.3   0.0  124  334-458     3-126 (216)
 38 5YY5_B MERS-CoV RBD, Heavy cha  99.8 3.5E-24 4.2E-29  214.4   0.0  124  334-458     2-125 (209)
 39 4L72_B Dipeptidyl peptidase 4   99.8   4E-24 4.8E-29  213.4   0.0  123  335-458     1-123 (204)
 40 3R4D_D CEA-related cell adhesi  99.8 5.2E-24 6.3E-29  219.9   0.0  240   30-304    30-283 (288)
 41 4NJL_A S protein; six-helix-bu  99.8 1.2E-23 1.4E-28  199.4   0.0  122  910-1035    2-125 (131)
 42 6QFY_A Spike glycoprotein; sia  99.8 2.6E-23 3.2E-28  214.7   0.0  236   30-305    29-286 (288)
 43 4H14_A Spike glycoprotein; bet  99.8 3.5E-23 4.3E-28  214.0   0.0  235   30-304    29-285 (290)
 44 4MOD_B HR1 of S protein, LINKE  99.8 1.9E-22 2.2E-27  191.3   0.0  118  918-1039    2-121 (129)
 45 5X4R_A S protein; MERS-CoV, sp  99.7 2.2E-21 2.7E-26  204.5   0.0  263   14-306    12-337 (342)
 46 6J11_C Spike glycoprotein, VH   99.7 2.8E-21 3.3E-26  203.4   0.0  262   14-305    12-336 (336)
 47 5GYQ_A Spike glycoprotein; bat  99.7 4.2E-21   5E-26  188.9   0.0  108  332-440     2-109 (176)
 48 5ZVK_A Human Coronavirus MERS   99.7 7.3E-21 8.9E-26  169.6   0.0   79  910-988     2-80  (80)
 49 2BEZ_C E2 GLYCOPROTEIN; MEMBRA  99.6 8.5E-20   1E-24  162.0   0.0   77  914-990     1-77  (77)
 50 6M1V_A spike protein; 2019-nCo  99.6 2.8E-19 3.4E-24  168.2   0.0   98  917-1020    1-98  (119)
 51 5ZUV_A Spike glycoprotein,EK1,  99.6 1.2E-18 1.5E-23  166.1   0.0   83  914-996     2-98  (133)
 52 5YL9_A Spike glycoprotein; Spi  99.5 1.1E-17 1.3E-22  151.9   0.0   74  914-987     2-89  (89)
 53 1WDF_B E2 glycoprotein; MHV, c  99.2 2.7E-14 3.2E-19  131.3   0.0   62  919-980     1-62  (95)
 54 1ZVA_A E2 glycoprotein; SARS c  99.0 1.7E-13 2.1E-18  121.9   0.0   58 1144-1201   15-77  (77)
 55 5ZHY_D Spike glycoprotein,Spik  98.8 7.4E-12   9E-17  122.0   0.0   59  918-976     1-73  (148)
 56 5XJK_A Spike protein S2; VIRAL  98.7 1.4E-11 1.7E-16  107.0   0.0   62  777-838     3-64  (65)
 57 1ZV8_K E2 glycoprotein; SARS c  98.6 1.2E-10 1.4E-15   98.3   0.0   50  919-968     1-50  (50)
 58 2IEQ_B Spike glycoprotein; Hum  98.5 1.3E-10 1.5E-15  109.6   0.0   84  921-1005    7-99  (109)
 59 2FXP_A Spike glycoprotein; Pre  98.5 1.6E-10   2E-15   98.2   0.0   54 1158-1211    2-55  (55)
 60 1WDG_B E2 glycoprotein; MHV, c  98.5 2.2E-10 2.6E-15  106.1   0.0   54  919-972     1-56  (94)
 61 2BEQ_D E2 GLYCOPROTEIN; VIRAL   98.4 5.2E-10 6.3E-15   93.7   0.0   47 1166-1212    2-48  (48)
 62 2BEQ_E E2 GLYCOPROTEIN; VIRAL   98.4 5.2E-10 6.3E-15   93.7   0.0   47 1166-1212    2-48  (48)
 63 6LXT_F Spike protein S2; 2019-  97.7 1.4E-07 1.7E-12   91.8   0.0   45 1163-1207   87-131 (132)
 64 6LXT_C 2019-nCoV S2 subunit; 2  97.7 1.4E-07 1.7E-12   91.8   0.0   45 1163-1207   87-131 (132)
 65 4MOD_B HR1 of S protein, LINKE  97.5 4.8E-07 5.8E-12   88.0   0.0   64 1142-1205   40-123 (129)
 66 1ZVB_A E2 glycoprotein; SARS c  97.3 1.9E-06 2.2E-11   69.0   0.0   34  958-991     1-34  (34)
 67 1WDG_B E2 glycoprotein; MHV, c  97.1 5.1E-06 6.2E-11   77.9   0.0   47 1156-1202   44-94  (94)
 68 6M1V_A spike protein; 2019-nCo  97.0 8.6E-06   1E-10   78.8   0.0   49 1157-1205   67-115 (119)
 69 2BEQ_C E2 GLYCOPROTEIN; VIRAL   97.0 9.9E-06 1.2E-10   66.1   0.0   36  932-967     2-37  (38)
 70 5ZVM_c Human Coronavirus SARS   96.7 2.6E-05 3.2E-10   65.3   0.0   41 1165-1205    4-44  (44)
 71 5ZVM_b Human Coronavirus SARS   96.7 2.6E-05 3.2E-10   65.3   0.0   41 1165-1205    4-44  (44)
 72 2BEZ_F E2 GLYCOPROTEIN; MEMBRA  96.4 8.7E-05 1.1E-09   61.4   0.0   42 1160-1201    1-42  (42)
 73 6LVN_B 2019-nCoV S2 subunit; 2  96.2 0.00019 2.3E-09   58.1   0.0   35 1169-1203    2-36  (36)
 74 1ZV8_B E2 glycoprotein; SARS c  96.2 0.00019 2.3E-09   58.1   0.0   35 1169-1203    2-36  (36)
 75 6LVN_A Spike protein S2; 2019-  96.2 0.00019 2.3E-09   58.1   0.0   35 1169-1203    2-36  (36)
 76 5YL9_B Spike glycoprotein; Spi  91.7   0.063 7.7E-07   48.0   0.0   41 1158-1201    4-58  (59)
 77 5ZUV_A Spike glycoprotein,EK1,  89.5    0.16   2E-06   51.2   0.0   44 1161-1204   90-133 (133)
 78 6MAR_D Immunoglobulin G PGT151  71.2       3 3.7E-05   42.9   0.0   29 1199-1227  154-183 (220)
 79 6DCQ_D Envelope glycoprotein g  68.2     3.9 4.7E-05   45.1   0.0   49 1197-1245  146-195 (352)
 80 6NIJ_B PGT145 Fab heavy chain,  68.2     3.9 4.7E-05   44.9   0.0   51 1197-1247  146-197 (345)
 81 1WDF_B E2 glycoprotein; MHV, c  63.1     5.7   7E-05   39.1   0.0   56 1144-1202   40-95  (95)
 82 6GY6_C XaxA, XaxB; bacterial t  58.0     8.2 9.9E-05   41.0   0.0   24 1172-1195  232-255 (424)
 83 6OJ7_A Fusion glycoprotein F0;  57.5     8.5  0.0001   34.2   0.0   29  927-955    17-45  (53)
 84 1G2C_W TWO HEPTAD REPEATS OF H  57.5     8.5  0.0001   34.1   0.0   29  927-955    17-45  (52)
 85 6NYX_H Fusion glycoprotein F0;  57.3     8.6  0.0001   34.1   0.0   29  927-955    17-45  (53)
 86 6O40_A Fusion glycoprotein F0;  57.3     8.6  0.0001   34.1   0.0   29  927-955    17-45  (53)
 87 6GY8_A XaxA; bacterial toxin,   55.0      10 0.00012   39.7   0.0   22 1173-1194  233-254 (408)
 88 6PWU_E Envelope glycoprotein g  52.0      12 0.00014   46.6   0.0   53 1196-1248  651-704 (858)
 89 3EUH_B Chromosome partition pr  52.0      12 0.00014   44.2   0.0  126  858-988   125-264 (440)
 90 3MAW_A Fusion glycoprotein F0;  50.7      13 0.00016   44.0   0.0   76  875-955    83-158 (483)
 91 6EK7_A YaxA; pathogens, pore f  49.9      14 0.00017   39.3   0.0   23 1172-1194  234-256 (410)
 92 1SVF_C SV5 FUSION PROTEIN; PAR  49.4      14 0.00017   34.0   0.0   29  927-955    26-54  (64)
 93 1SVF_A SV5 FUSION PROTEIN; PAR  49.4      14 0.00017   34.0   0.0   29  927-955    26-54  (64)
 94 2FYZ_E Fusion glycoprotein F0;  48.5      15 0.00018   33.8   0.0   29  927-955    29-57  (63)
 95 2B9B_B Parainfluenza Virus 5 F  48.3      15 0.00018   43.7   0.0   76  875-955    79-154 (497)
 96 5YZC_B glycoprotein F2, glycop  47.2      16 0.00019   42.7   0.0   73  878-955     1-73  (419)
 97 1T98_B Chromosome partition pr  46.8      16  0.0002   41.3   0.0  104  858-966   125-236 (287)
 98 1T98_A Chromosome partition pr  46.8      16  0.0002   41.3   0.0  104  858-966   125-236 (287)
 99 1G5G_F FUSION PROTEIN; fusion   45.6      18 0.00021   42.9   0.0   76  875-955    83-158 (481)
100 5EVM_F Fusion glycoprotein F0;  45.4      18 0.00022   43.4   0.0   76  875-955   107-182 (529)
101 6T3F_F Fusion glycoprotein F0,  42.9      21 0.00025   42.7   0.0   76  875-955    85-160 (502)
102 3N27_B Fusion glycoprotein F0,  42.7      21 0.00025   34.6   0.0   28  927-954    18-45  (80)
103 1ZTM_C Fusion glycoprotein; fu  42.5      21 0.00026   42.4   0.0   75  876-955    90-164 (490)
104 4GIP_D Fusion glycoprotein F2,  42.0      22 0.00026   41.5   0.0   72  878-955     1-73  (409)
105 6H2E_Q AhlB; Tripartite pore-f  41.7      22 0.00027   35.5   0.0   23 1173-1195  128-150 (274)
106 5IJO_G Nuclear pore complex pr  40.4      24 0.00029   42.7   0.0   55 1133-1189  239-293 (599)
107 1WP7_A fusion protein; Nipah V  40.3      24 0.00029   34.8   0.0   28  927-954    18-45  (89)
108 1WP8_C fusion; Hendra Virus, F  39.6      25 0.00031   34.6   0.0   28  927-954    18-45  (89)
109 6R1J_J AhlB; Tripartite pore-f  39.2      26 0.00031   34.8   0.0   24 1172-1195  127-150 (272)
110 6C14_A Protocadherin-15, LHFPL  38.6      27 0.00032   35.4   0.0   26 1108-1133   82-109 (337)
111 5EJB_D Fusion glycoprotein F0;  38.0      28 0.00034   41.7   0.0   76  875-955    82-157 (501)
112 2M8R_A Syntaxin-1A; syntaxin,   36.7      30 0.00036   29.7   0.0   12 1211-1222   84-95  (109)
113 3HD7_B Vesicle-associated memb  36.7      30 0.00036   29.7   0.0   12 1211-1222   84-95  (109)
114 5C3L_B Nucleoporin Nup54, MGC8  34.3      35 0.00042   32.1   0.0   57 1131-1189    6-62  (142)
115 5G6U_A LANGERIN; CARBOHYDRATE   33.0      38 0.00046   33.5   0.0   42 1038-1090  123-164 (261)
116 3IPD_E Vesicle-associated memb  26.9      56 0.00068   28.7   0.0    9 1212-1220   68-76  (91)
117 3HD7_A Vesicle-associated memb  26.9      56 0.00068   28.7   0.0    9 1212-1220   68-76  (91)
118 6BP2_B Envelope Glycoprotein G  24.9      64 0.00078   35.3   0.0   40  925-964   122-161 (202)
119 6QD8_D Light chain, Virion spi  23.5      72 0.00087   33.9   0.0   34  931-964    61-94  (168)
120 4NJL_A S protein; six-helix-bu  22.6      76 0.00092   33.2   0.0   27 1178-1204  104-130 (131)
121 4LWS_B Uncharacterized protein  22.2      79 0.00095   26.3   0.0   32  955-986    54-85  (103)
122 2NRJ_A Hbl B protein; Enteroto  21.9      80 0.00097   32.4   0.0   15 1205-1219  194-208 (346)
123 2N2A_B Receptor tyrosine-prote  21.7      81 0.00099   26.9   0.0   23 1206-1228    1-23  (58)
124 6F5U_B Envelope glycoprotein,G  21.4      83   0.001   33.1   0.0   38  927-964    57-94  (168)
125 5F1B_B GP1, GP2, Niemann-Pick   21.4      84   0.001   31.9   0.0   37  929-965    52-88  (130)
126 6HS4_B Envelope glycoprotein,E  21.3      84   0.001   33.1   0.0   40  925-964    55-94  (168)
127 2KG7_A Uncharacterized protein  21.1      85   0.001   25.8   0.0   66  923-988    14-80  (97)
128 6W08_B NSP15 endoribnuclease;   20.9      87  0.0011   32.8   0.0   55 1139-1193  122-184 (359)
129 3OGI_C Putative ESAT-6-like pr  20.4      90  0.0011   26.8   0.0   66  921-986    11-77  (101)
130 5HJ3_L Envelope glycoprotein,   20.1      93  0.0011   31.8   0.0   35  930-964    60-94  (136)
131 6RX1_A Syncytin-1; HUMAN PLACE  20.0      93  0.0011   31.0   0.0   53  908-964    12-64  (108)

No 1
>6X29_A Spike glycoprotein; Trimer, VIRAL PROTEIN; 2.7A {Severe acute respiratory syndrome coronavirus 2}
Probab=100.00  E-value=2.9e-269  Score=2251.14  Aligned_cols=1198  Identities=99%  Similarity=1.476  Sum_probs=961.9  Template_Neff=3.900

Q sp|P0DTC2|SPIK   16 VNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFAST   95 (1273)
Q Consensus        16 vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfast   95 (1273)
                      |||||||||||+||.+..+|+||||..++|++.+.+|+||+|+.+++++++|||++|++....+++++.||+||+|+...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~g~yYpd~~~~sn~t~l~qglfp~~~s~~~~y~~~~~~gt~~~~~y~~~~~~F~dGifv~v~   80 (1273)
T 6X29_A            1 VNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFAST   80 (1273)
T ss_dssp             -----------CEEECCSCCCBCCSSEECCSEEEEEEEEECCTTCEEECCCCCC----------CCCCEECTTCEEEEEE
T ss_pred             CCcccccCCCCCcccccceeeEeeCCeeEeecccccccccCCCCCCceEEeeEEeecCCcccccCCCCcccCCeEEEEee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK   96 EKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPF  175 (1273)
Q Consensus        96 eksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpf  175 (1273)
                      +++|..++|+||+|.+.++++++|+++.+.+.|.+|.|++|..|++.++++.+|.+|+|++++.|..++||+|+|..|+|
T Consensus        81 ~~~n~~p~~~fGstf~n~s~tvvI~P~~~~~~it~C~~~vC~~p~~~~~~~~g~~~~~~~~~~~~~~~~nc~f~~~~~nf  160 (1273)
T 6X29_A           81 EKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPF  160 (1273)
T ss_dssp             ESSCCEEEEEEESSCSSSSCCCEEEECSSCEEEECCCCCCCSSCCEEC---------------------CCCCEEEC---
T ss_pred             ecccCcceEeEEeccCCCcEEEEEeCCCcceEEEEEEEEecCCCeeEEEeecCCceeeeeehhhhccCCCceEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  176 LMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS  255 (1273)
Q Consensus       176 lmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss  255 (1273)
                      .||.+.++|+|...++|+|++.||+|.+|..+++++..+.+|+|+..+.|..++|+|+||+|+|.++.+.|++.+|++.+
T Consensus       161 t~d~~~~~~~~~~~~~~~F~~~dG~f~iY~~~~~~~~~~~~~~~~~~~~yy~~~p~g~n~~~~~~~~~~~~~~~~~~~~~  240 (1273)
T 6X29_A          161 LMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS  240 (1273)
T ss_dssp             ----------CCEEEEEEEEEETTEEEEEEEEEECCCSSSCCSSCCCBEEEEEEECCCCCSEEEEEEEEC----------
T ss_pred             eeccccCccceeeeEeEEEEecCCeEEEEEeCCCCcccccCCccccccchhhcCCCCCccccceeEEEeeeecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999889


Q sp|P0DTC2|SPIK  256 SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNL  335 (1273)
Q Consensus       256 sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnl  335 (1273)
                      ++|+.+.++|||+||+||+|||+|++||.||+||||+.||++|.||..+||++++|+|++|+||+||...++|+++++..
T Consensus       241 ~~~~~~~~~~yV~~L~~r~yLl~fd~nG~It~AvDCa~~~~sEL~Cst~SF~p~tGVY~lS~yraqP~~~V~~~~~~~~~  320 (1273)
T 6X29_A          241 SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNL  320 (1273)
T ss_dssp             -------CCEEECCCEEEEEEEEECTTSCEEEECCTTSCHHHHHHHHHTCSSCCSEEEEEEEEECCCCCCCEECCCCCCB
T ss_pred             cccceeeeEEEEEeccceeEEEeecCCCeEeEEEecccCcchhceeEecceecCCcEEeccCeEEEeceEEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  336 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQT  415 (1273)
Q Consensus       336 cpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqt  415 (1273)
                      |+|.+++++.++.++|.|.|++++||..|+++|++..++++|+||||+|.||.++||..|++|.|.|..++.++++||++
T Consensus       321 C~~~~~~~~~~~Psp~~w~R~~fsNCnfn~s~Lls~~~~~~f~C~~ispskL~~mCfssvtiD~F~ip~~~~~~l~~g~~  400 (1273)
T 6X29_A          321 CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVCPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQT  400 (1273)
T ss_dssp             CCCHHHHTCSSCCCGGGCEEEEECSSBCCHHHHHHCSCCSEEEESSSCGGGGTTCCCSEEEEEEEEECGGGGTTCSTTCC
T ss_pred             CChhHHhcCCCCCCcceeEEEEEecCCCcHHHHhhccccceeEEeCCCHHHhcccccCeeEEEEEEecccceeecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  416 GKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSY  495 (1273)
Q Consensus       416 gkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy  495 (1273)
                      |.|++||||+|+||+||+++|+.++++..+.++|||++|.+++++++|||||+++|+||.+.++|+...|.+|++|+..+
T Consensus       401 g~i~~yNYkl~~~~~~C~l~~~~~~~~~~~t~~y~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~C~~~~~~~C~~pl~~~  480 (1273)
T 6X29_A          401 GKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSY  480 (1273)
T ss_dssp             STTTTTTCCCCTTCCEEEEEEECTTTTCC--CBCCCEEC-------CTTCCCC--------------------CCSCEEC
T ss_pred             cHHHhcCcCCCCCCCCeEEEEEeCCcccCCcccHHHHHHhcccCCCCcccCCCchhhhcCCCCCCCCCCcccceeccccc
Confidence            99999999999999999999999999998999999999999999999999999999999999999976799999999999


Q sp|P0DTC2|SPIK  496 GFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  575 (1273)
Q Consensus       496 gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttda  575 (1273)
                      ++....|++++.+++++++++....|++|||.+..++++.++||++|..|.||+||++++|..+..+|.||.++.|+..+
T Consensus       481 ~~~~~~g~~~~c~~lv~IT~~~t~~~~~Vc~~~~~snI~LnvCVdYNIYGiTGqGVItntn~t~~~~q~~gl~~~g~s~g  560 (1273)
T 6X29_A          481 GFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDA  560 (1273)
T ss_dssp             CBCTTC-CTTSCEEEEEEEEECCSSCCCCCCSCCCCCCCCSSEECCEETTEECCEEEEECCCCCCTTCCEEECTTSCEEE
T ss_pred             ceecCCcccceeeEEEEEEEecCCCCCcccCCcCCceeEeceEEeeEeCCceeEEEEEecCCCCccchhcceecCCCcce
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  576 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  655 (1273)
Q Consensus       576 vrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaeh  655 (1273)
                      +|++.++++..|+||..+.++|+..|+|+++|+|+||..+||++++.++++.+++|.|++++++++.||||+||++||.+
T Consensus       561 FKn~ttG~~YsV~PC~~~~QsVVy~g~~~s~q~AgL~tSinCt~v~~~~~s~~~t~~fy~~s~~~~~~~T~~gcv~na~~  640 (1273)
T 6X29_A          561 VRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEH  640 (1273)
T ss_dssp             EECSSSCCEEEEECCCEEEEEEEECCTTTCSCCEEEEETCCTTCC--------------------CEEECSSEEEESCEE
T ss_pred             EECCCCCCEEEEEeCcccceEEEcCCCCCcceEEEEEeccCCCCCcceeeccccCCeeEEEeCCCCceeeceeEeeccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  656 VNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTS  735 (1273)
Q Consensus       656 vnnsyecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts  735 (1273)
                      .++..+|+.|+|.|||+.+.+...+++..+.+....+..|+|.+..+..++.+...|.||+||||+|++|.++++|.|.+
T Consensus       641 ~t~~~~C~~Pvg~giC~d~~~~~~~~~s~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~IP~nFtlsvt~EyiQt~~~kVs  720 (1273)
T 6X29_A          641 VNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTS  720 (1273)
T ss_dssp             CSSCCCCSEEEETTEEEEEEC------------CCEEEEEECCCSCEEECCCCTTEEEEEEEEEEEEEEEEEECCCCCEE
T ss_pred             cCCCCcCCCCceEEEeecCCccCCCCCccccccceeEEeeeccCCccccccccceEEEccCCeEEEEEEEEeeecCCceE
Confidence            99999999999999999999843333323345667888999988887888899999999999999999999999999999


Q sp|P0DTC2|SPIK  736 VDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKR  815 (1273)
Q Consensus       736 vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskr  815 (1273)
                      |||.+|+|||+.+|.+||.|||+||..+|+||.|.+..+|.+..+++..+++.++++.+.+|+||||+.+||.+++|++|
T Consensus       721 IDC~~YVC~~~~rC~~LL~QYgsfC~~I~~aL~~~a~led~~~~~~~s~~~~~~~~~~~~~~~~fN~s~llp~~~~~~~R  800 (1273)
T 6X29_A          721 VDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKR  800 (1273)
T ss_dssp             ECHHHHHSTTCHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCSSCCSTTCCCTTTSBCTTSSSCC
T ss_pred             EecchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhhHHhcCCCcccCCCccccccCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  816 SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQ  895 (1273)
Q Consensus       816 sfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalq  895 (1273)
                      |+||||||+||+.+|.|+.+.|.+|.++..+|||+|||.|||+.||||++++||++.||++|++|....|||||+++|..
T Consensus       801 SaIEDLLF~KV~t~glG~~~~Yk~Ct~g~~i~DL~CAQyyNGimVLPpv~d~~~~amYTasL~g~m~~gg~T~G~tsaaa  880 (1273)
T 6X29_A          801 SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQ  880 (1273)
T ss_dssp             BHHHHHHSSSCC--------------------------CCSSEEECCCSSCHHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred             cHHHHHhcCceEeCCCChhHhhHHccCCccHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHHHHHhcccccCcchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  896 IPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS  975 (1273)
Q Consensus       896 ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss  975 (1273)
                      |||||||.||+||+|+||+||.||||+|||.||.||+.||+.++.|++||.|+|||||++++||++|++||+.|||||||
T Consensus       881 iPFa~~vq~RlN~v~lt~~VL~~NQk~iA~sFN~A~~~i~~g~~tts~AL~kiQ~VVN~~~~aL~~L~~QL~nnFgAISS  960 (1273)
T 6X29_A          881 IPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS  960 (1273)
T ss_dssp             CCHHHHHHHHHHTTTCCTHHHHTTHHHHHHHHHHHHHHHHHHHSSCGGGGHHHHHHHHHHHHHHHHHGGGGGCCTTSSCS
T ss_pred             chhHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  976 VLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQS 1055 (1273)
Q Consensus       976 vlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqs 1055 (1273)
                      .++||++|||++||++||||||+|||.+|++||+|||+|++|+|+|+.||..||+|||..||+|.+|||.|.|++|+||.
T Consensus       961 SI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtQ~L~~~~evr~sr~LA~qKINECVKsQS~R~gFCGnG~Hi~S~~q~ 1040 (1273)
T 6X29_A          961 VLNDILSRLCPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQS 1040 (1273)
T ss_dssp             CHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSTTSSSSSEEEECCEEE
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcCCCCeeEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1056 APHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNN 1135 (1273)
Q Consensus      1056 aphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn 1135 (1273)
                      ||+|++|+|++|+|.+.++.+++|.+|+++++..|++|+|+.|+++|++|.|++|||..||.+|..+...|||....+|+
T Consensus      1041 AP~Gi~F~H~~~~Pt~~~~v~a~~GlC~~~~~~~~~~g~~~~~~~~~~~T~r~~y~P~~~t~~d~v~i~sC~V~y~~vn~ 1120 (1273)
T 6X29_A         1041 APHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNN 1120 (1273)
T ss_dssp             ETTEEEEEEEEEEEEEEEEEECBSCEESSSCEEEESSSEEEESSSSEEEECSSSCCCBCCBTTTEEECSCTTTSTTCEEC
T ss_pred             CCCeEEEEEEEecccceEEEEEeceEeeCCceeeecceEEEEcCCEEEEcccccccCccCCCCceEEeccceeEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1136 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWP 1213 (1273)
Q Consensus      1136 tvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikwp 1213 (1273)
                      ++.+|++|++..|+|||+|||||||+|+.++++++.+|++++|++.||++|+|+.|+||+++|||++|++||+|-+++
T Consensus      1121 t~~~~~~pd~~df~~el~~~~~N~t~p~~~~~~~~~~N~T~LNLt~EI~~Lq~~I~~LN~slIDLe~Ln~~e~y~~~~ 1198 (1273)
T 6X29_A         1121 TVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYI 1198 (1273)
T ss_dssp             CCBCSHHHHHHC------------------------------------------------------------------
T ss_pred             cccCCCCCCCCCHHHHHHHHccCCCCCCCCCCccccccccccchHHHHHHHHHHHHHHHHhcccHHHhcceeeeccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998764


No 2
>6CS2_B Spike glycoprotein,Envelope glycoprotein, Angiotensin-converting enzyme; membrane fusion, glycoprotein, receptor binding; HET: BMA, MAN, NAG;{Human SARS coronavirus}
Probab=100.00  E-value=3.2e-221  Score=1857.50  Aligned_cols=1161  Identities=77%  Similarity=1.263  Sum_probs=1101.0  Template_Neff=4.100

Q sp|P0DTC2|SPIK   31 SFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTL  110 (1273)
Q Consensus        31 sftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttl  110 (1273)
                      +-.+|+||||..++++...-+|++|.++-++++-+|+.       -.-+.+++.||+||+++...+++|.-++|+||+|.
T Consensus        22 ~~~~g~yYPd~~~~sN~t~L~qglfp~~gs~~~~~~~~-------~~~y~~~~~~F~dGifv~v~~~~n~~~a~~fGsTF   94 (1215)
T 6CS2_B           22 SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTI-------NHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTM   94 (1215)
T ss_pred             cccceeEecCCeeeccceeeeeCccCCCCCCCccCCcc-------hhhcCCCccccCCcEEEEeeEecCCCCceeeeecc
Confidence            45689999999999999999999999999999987776       34577889999999999999999998899999999


Q sp|P0DTC2|SPIK  111 DSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLR  190 (1273)
Q Consensus       111 dsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlr  190 (1273)
                      +..+++++|+++-+...|.+|.|..|..|...+++.-.|    -.+++.|..+.||+|.|.|+.|-+|...+-.+....+
T Consensus        95 ~N~s~tvVI~P~~~~~~it~C~~~vC~~p~~~~~p~~gn----~~~~~~~~~~~nc~f~~~~~nfT~d~~~~~~~~~~r~  170 (1215)
T 6CS2_B           95 NNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGT----QTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLR  170 (1215)
T ss_pred             cCCceEEEEcCCCCcceeeEeEEEeCCCCceeEcCCCCC----cccccceeecCCceEEEcccccccccccceeeeeEEE
Confidence            999999999999999999999999999999988874443    4678889999999999999999999888888888899


Q sp|P0DTC2|SPIK  191 EFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYL  270 (1273)
Q Consensus       191 efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgyl  270 (1273)
                      +|+|++.||+|-+|-.+.+.+..+.+|.|...|.|..-+|..++|+.|..++ -.||  ++   .+.|+...++|||.+|
T Consensus       171 ~f~F~~~~G~fy~Y~a~~~~~~f~~~~~~~~~l~yy~vip~~~~~~~~~~~~-~~~~--~~---~~~~~~~~~~~yv~~L  244 (1215)
T 6CS2_B          171 EFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAIL-TAFS--PA---QDIWGTSAAAYFVGYL  244 (1215)
T ss_pred             EEEEEecCCeEEEEeecCCCcccccCCCCcccceeeEeeceecccccceEEe-eecC--CC---CCcccccceEEEEeec
Confidence            9999999999999988877777899999999999999999999999998872 2233  22   5677888999999999


Q sp|P0DTC2|SPIK  271 QPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASV  350 (1273)
Q Consensus       271 qprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasv  350 (1273)
                      .+|+++|.|..||+|+|++||+-+|.+|-+|.-.+|....|.|..++++++|.-...|.......|+|.+++++.++.++
T Consensus       245 ~~~~~lLayf~NGti~dvIdC~~sp~~~LaCqy~T~nfsdGvYp~s~~~vk~~fiVyr~~~~~~~C~~~~~~~~~~~Psp  324 (1215)
T 6CS2_B          245 KPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSV  324 (1215)
T ss_pred             eeceeehHHhcCCeEEEEEECCCCcccceeceeceeccCCCeeeccceEeeceEEEEECCCCCCCCCHHHHhhCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q sp|P0DTC2|SPIK  351 YAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFT  430 (1273)
Q Consensus       351 yawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddft  430 (1273)
                      |.|.|+.++||..|+++|++..++++|+||||||.||.+.||..|++|.|.|..+..++++||++|.|++||||+|+||+
T Consensus       325 ~~w~R~~fsnCnfn~s~Lls~~~~~~f~C~gIspskLa~mCfsSvtiD~F~ip~s~~~~l~~g~~g~i~~~NYkl~~~~~  404 (1215)
T 6CS2_B          325 YAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM  404 (1215)
T ss_pred             cceeEeEEecCCCCHHHHHhcceeeeeEeeCCCHHHHcccccCeeeEEEeeccccchhhcCCCCCchHHhcccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  431 GCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRV  510 (1273)
Q Consensus       431 gcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrv  510 (1273)
                      ||+++|+-.+++..+..++|+.++-.|+..++|+++|.+.--+.-...+|. ..|-.|..++..|.+...-|+|++++++
T Consensus       405 ~C~l~~~~~~~~vn~t~~~n~~~~~~r~~~~~~~~~d~~~CPf~~~~s~C~-~~~~~~~~~i~~~~~~~~~g~~~~~~g~  483 (1215)
T 6CS2_B          405 GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCT-PPALNCYWPLNDYGFYTTTGIGYQPYRV  483 (1215)
T ss_pred             ceEEEEEcCccceeccCCCCcccccccccceeecCCCCCCCCCCCCCCCCC-CCCCCCCcccccccceeeccccceeeEE
Confidence            999999988888776667777766666666889999888744444467884 3666777788888765567999999999


Q sp|P0DTC2|SPIK  511 VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPC  590 (1273)
Q Consensus       511 vvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpc  590 (1273)
                      ++++++....|++|||+|..+.++.+.||++|+.|.||+||++|+|..+..+|.|+.|..+-..++||+.|+++..|+||
T Consensus       484 lvis~k~~~~p~tVCg~~~~T~l~ldvCV~YnIYGiTGtGVi~~sn~t~~sgqsf~~ds~GfL~gfKn~ttG~iYsI~PC  563 (1215)
T 6CS2_B          484 VVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPC  563 (1215)
T ss_pred             EEEEEEEcCCCCcccCCcCccceeeceeEeEEeCCceeeEEEEecCcEecCCeeeEEeCCcceeEEEeCCCCCEEEEeeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  591 SFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGI  670 (1273)
Q Consensus       591 sfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagi  670 (1273)
                      .++.|||+.+|.++|+..|+||..++|+++....+..+.+|.|+.++++.+.|||-+||++||++.+...+|++|+|.|+
T Consensus       564 ~s~~VSVVy~g~~sS~~~alLf~~v~C~~v~~~~~~~~~~p~~~~~s~~~~~fdT~~GCv~na~n~~~v~~C~lplG~Gl  643 (1215)
T 6CS2_B          564 AFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGI  643 (1215)
T ss_pred             eecceEEEEcCCccCCCcceeccccccccccccccceeecCceEEeeCCCCCcccccceeecccCCCcccccCcccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  671 CASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECS  750 (1273)
Q Consensus       671 casyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecs  750 (1273)
                      |+.+.+    .++.|+....++..|+++++....++.+...|.||+||||+|++|-++++|.|.+|||.+|+||++.+|.
T Consensus       644 C~d~~~----~~~~~~~~~~~~~~y~~p~~~~s~~~~~~~~i~IP~nft~~v~~Eyiq~~~~kv~idC~~YVC~~~~~C~  719 (1215)
T 6CS2_B          644 CASYHT----VSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECA  719 (1215)
T ss_pred             ecCCCc----eeeccCCCceeeeeeecCCCCCCCCCceeeEEEccCCeEEEEEEEEeeecCCCeEEechhhccCCCHHHH
Confidence            999988    3333335566778999998765578888999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  751 NLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLAD  830 (1273)
Q Consensus       751 nlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtlad  830 (1273)
                      +||.|||+||..+|+||.+.+..+|.+..+++...++-++.|-+..||||||+.+||.++++++||+||||||+||..+|
T Consensus       720 ~lL~qYgs~C~~I~~al~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~n~s~~l~~~~~~~~RS~iEDLLF~KV~t~g  799 (1215)
T 6CS2_B          720 NLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD  799 (1215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhcccCCCCCcccccCCccchhcCCCCCCCCCccHHHHHHcCeeeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  831 AGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIG  910 (1273)
Q Consensus       831 agfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngig  910 (1273)
                      .|+.+.|.+|.+...+|||+|||.+||+.||||++++||++.||++|++|....|||||+|+|..|||||||.||+||+|
T Consensus       800 ~g~~~~Y~~C~~g~~i~DL~CaQ~ynGi~VLP~v~~~~~~a~YT~sl~g~ma~gg~T~g~~sa~aiPFa~~vq~RlN~v~  879 (1215)
T 6CS2_B          800 AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIG  879 (1215)
T ss_pred             CCchhhHhhccCCccHHHHhcccccCeEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccccccccHHHHHHHHhchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  911 VTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE  990 (1273)
Q Consensus       911 vtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveae  990 (1273)
                      +||+||.||||+|||.||.||+.||+.++.+++||.|+||||||+++||++|++||+.|||||||.++||++|||++||+
T Consensus       880 l~~~vL~~NQk~iA~sFN~A~~~i~~g~~t~~~Al~kiQ~VVN~~~~aL~~L~~qL~~nFgAISssi~dIy~RLd~leAd  959 (1215)
T 6CS2_B          880 VTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE  959 (1215)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  991 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA 1070 (1273)
Q Consensus       991 vqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpa 1070 (1273)
                      +||||||+|||.+|++||+|+|+|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+||.||+|++|+|.+|+|.
T Consensus       960 aQvDRLItGRL~aLna~vtq~l~~~~~v~~sr~lA~qKinECVksQS~R~gFCGnG~Hi~S~~q~AP~Gi~F~H~~~~Pt 1039 (1215)
T 6CS2_B          960 VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPS 1039 (1215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCCeeeEeecccCCCeEEEEEEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1071 QEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKE 1150 (1273)
Q Consensus      1071 qeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfke 1150 (1273)
                      +.++.+++|.+|+++++..|++|+|+.|++.|++|.|++|||..||.+|...-..|||....+|+++.+|++|++..|+|
T Consensus      1040 ~~~~v~a~~GlC~~~~~~~~~~g~f~~~~~~~~~T~r~~y~P~~~t~~d~v~i~sC~V~y~nvn~~~~~~~~p~~~df~~ 1119 (1215)
T 6CS2_B         1040 QERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKE 1119 (1215)
T ss_pred             ceeEEEEEceeeeCCCceeecceEEEEcCcEEEEeccccccCCCCChhceEEeecCceeEEeecCCCCCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1151 ELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWP 1213 (1273)
Q Consensus      1151 eldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikwp 1213 (1273)
                      ||++|+||||+|+.+++++..+|++++|++.||++|+|+.|+||+++|||++|++||+|-+|+
T Consensus      1120 el~~~~~N~t~p~~~~~~~~~~N~t~LnLt~EI~~L~~~i~~LN~s~IDLe~L~~~e~ya~~~ 1182 (1215)
T 6CS2_B         1120 ELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYI 1182 (1215)
T ss_pred             HHHHHhcCCCCCCCCCCChhhccccccchHHHHHHHHHHHHHHHhcCcCHHHhcceeHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999998875


No 3
>6Q04_B Spike glycoprotein; Coronavirus, spike glycoprotein, MERS-CoV, membrane; HET: MAN, SIA, NAG, FOL, BMA; 2.5A {Human betacoronavirus 2c EMC/2012}
Probab=100.00  E-value=1.8e-204  Score=1723.92  Aligned_cols=1150  Identities=31%  Similarity=0.496  Sum_probs=897.1  Template_Neff=3.700

Q sp|P0DTC2|SPIK   31 SFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG--T-------KRFDNPVLPFNDGVYFASTEKSNII  101 (1273)
Q Consensus        31 sftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng--t-------krfdnpvlpfndgvyfasteksnii  101 (1273)
                      +-.+|+||||..++++..+-.|++|.+.-++.+-.-   ++|++.  +       -.++.+..||+||+++...+.+|--
T Consensus        65 s~~~G~yYPd~rvysN~TlL~qglfP~~gs~~~~y~---~~~t~~~s~~~~~~~~~~y~~~~~~F~dGifvkv~~~~n~t  141 (1359)
T 6Q04_B           65 SKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYV---YSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANST  141 (1359)
T ss_dssp             GGTTTCBCCTTCEECSEEEEEEEEECCTTCCCEEEC---CEECCEETTEECSEEECSCTTCCEECTTCEEEEESTTTTSE
T ss_pred             ccCceeEeeCCeeEeeeeeeeeceecCCCCcceEEE---EEecCCCCCCCcceeeeccCCChhhccCeEEEEEeeeecCC
Confidence            346899999999999999999999999988876542   333332  1       3567789999999999888766643


Q sp|P0DTC2|SPIK  102 R-----------------GWIFGTTLDSKT---Q------SLLIVNNATNVVI-------KVCEFQFCNDPFLGVYYHKN  148 (1273)
Q Consensus       102 r-----------------gwifgttldskt---q------sllivnnatnvvi-------kvcefqfcndpflgvyyhkn  148 (1273)
                      .                 .++||+|.+...   +      +++|+++-.+.++       ...+..-|..|..-+++.-+
T Consensus       142 g~~~~~~~~~~~~~~~ypa~~fGsTF~Nts~~~~~~~~~~tlVI~P~~~g~~~~~~~c~~~prtit~C~~p~~~~~p~~~  221 (1359)
T 6Q04_B          142 GTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATY  221 (1359)
T ss_dssp             EEETTEEEEEEEEECCCCCEEEESCEEECTTSCEEEECSEEEEEEEETTTTEEEEEEEEEEECCSBTSTTSSSCCCCCEE
T ss_pred             CCeeeCCccccchhhhccceEeeccccCCCCCccccccceEEEEecCCCCchheeeeecccccccCcCCCCCeEeeeeec
Confidence            2                 256999998666   5      8899988887543       32333345555555554222


Q sp|P0DTC2|SPIK  149 N---KSWMES---------EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNID-GYFKIYSKHTPINL---  212 (1273)
Q Consensus       149 n---kswmes---------efrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknid-gyfkiyskhtpinl---  212 (1273)
                      .   .+|..+         +++.|....+|+|.|. +.|-+|...  ..|-    |.|+..| |.|-+|.-++..+.   
T Consensus       222 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~nfT~d~~~--~wf~----~~F~~~~~G~f~~Y~~d~~~~~~f~  294 (1359)
T 6Q04_B          222 HTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYT-YNITEDEIL--EWFG----ITQTAQGVHLFSSRYVDLYGGNMFQ  294 (1359)
T ss_dssp             ECHHHHBCSSCBCTTHHHHHHHHHEEEEEEEEEEE-EECCCCCCC--EEEE----EEEETTEEEEEESTTTCTTTCCBEE
T ss_pred             CCCCccCCCCcccccccccchhHhcccCCceEEEe-eecCcchhh--heee----EEeeecCceeEEEEEEecCCCccee
Confidence            1   245333         6778889999999875 344333211  1121    9999999 99999876654432   


Q sp|P0DTC2|SPIK  213 VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCA  292 (1273)
Q Consensus       213 vrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdca  292 (1273)
                      ..-+| |+..+.+..               .+-|+..++   .+.+. ..++|||++|.+|+|||+|++||.|++||||+
T Consensus       295 f~~~~-~~~~~~yy~---------------v~p~~~~~~---~~~~~-~~~~~yv~~L~~~~~Ll~fd~nG~I~~avDC~  354 (1359)
T 6Q04_B          295 FATLP-VYDTIKYYS---------------IIPHSIRSI---QSDRK-AWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCG  354 (1359)
T ss_dssp             EEEEC-CCSCCCEEE---------------ECCEEECCC---GGGCC-EECCEEEEECEEEEEEEEECTTSCEEEEEETT
T ss_pred             ccccc-ceeccceee---------------eeeeeecCC---ccccc-eeEEEEEEEccceeEEEeecCCCeEEEEEecC
Confidence            12222 444444443               233444444   34455 77899999999999999999999999999999


Q sp|P0DTC2|SPIK  293 LDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSA  372 (1273)
Q Consensus       293 ldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsa  372 (1273)
                      -|+++|-||..+||.+++|+|++|+||+||....+|.++. ..|+|.++++ .++.++|.|.|+.++||..|+|+|++..
T Consensus       355 ~~~~sEL~C~~~sf~~~tGVY~~S~y~aqp~~~v~~~~~~-~~C~~~~~~~-~~~P~p~~w~R~~f~nCnfN~s~Lls~~  432 (1359)
T 6Q04_B          355 FNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEG-VECDFSPLLS-GTPPQVYNFKRLVFTNCNYNLTKLLSLF  432 (1359)
T ss_dssp             SCHHHHHHHHTTSSCCCSEEEEEEEECCCCSCEEEECCCS-CBCCCGGGGS-BCCCBGGGCEEEEECSEEECHHHHHTTS
T ss_pred             CCccchheeEeceecCCCCeeecCCEEEEeeeEEEEecCC-CCCCchHHhc-CCCCCcceeEEeEEecCCCcHHHHHhhc
Confidence            9999999999999999999999999999999999999999 9999999999 8899999999999999999999999999


Q sp|P0DTC2|SPIK  373 SFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV--GGNYN  450 (1273)
Q Consensus       373 sfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskv--ggnyn  450 (1273)
                      .+++|+||||+|.||.+.||..|++|.|.|..+..++++||++|-|++||||+|+||+||+++|+-...+..+  -.+|+
T Consensus       433 ~~~sF~C~gIspskLa~mCfsSvtiD~Faip~~~k~~Lq~G~~G~i~~yNYKld~~~~gC~l~y~~pa~~vn~t~p~~y~  512 (1359)
T 6Q04_B          433 SVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYS  512 (1359)
T ss_dssp             EEEEEEEESSCHHHHTTCCBSEEEEEEEECCGGGGGGGSTTBCSHCCCCCCCCCSSSCEEEEEEECCTTCTTBCCCSEEE
T ss_pred             eeeeeeecCCCHHHHcccccceeeEEEEecCccccceecCCCCChhhhccccCCCCCCccEEEEEcCccccccCCCccce
Confidence            9999999999999999999999999999999999999999999999999999999999999999955533322  44555


Q sp|P0DTC2|SPIK  451 YLYRLFRKSNLKPFERDISTEI---YQAGSTPCNGV-EGFNCYFPLQSY-----------GFQP----TNGVGYQPYRVV  511 (1273)
Q Consensus       451 ylyrlfrksnlkpferdistei---yqagstpcngv-egfncyfplqsy-----------gfqp----tngvgyqpyrvv  511 (1273)
                      |+.|-+++..     ++. ++.   ..+ .+-|+-. ...+|+.|...+           |..|    ..++++|++.++
T Consensus       513 yi~~~~~~~~-----~~~-~~~~~~~~~-~~~cpc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  585 (1359)
T 6Q04_B          513 YINKCSRLLS-----DDR-TEVPQLVNA-NQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGF  585 (1359)
T ss_dssp             EEEEEEEECT-----TSS-CEEECCCCT-TSCCGGGGTSCSSCSSTTCEEEEECCGGGTSSEEEEEEEEEECCSSCEEEE
T ss_pred             eeeeeeccCC-----CCC-Ccchhhccc-cccCCCCccCCccccCCCCccccccccccCCchhcccccccccccceeEEE
Confidence            5555555333     222 222   111 1112100 112455543322           2333    458999999999


Q sp|P0DTC2|SPIK  512 VLSFELLHAPATVCGP-----KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILD  586 (1273)
Q Consensus       512 vlsfellhapatvcgp-----kkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleild  586 (1273)
                      |++++..+.++|||++     |.+|.++.++||++++.|+||+||++|+++.+.++|+|..|-.+-..++|| +++++.+
T Consensus       586 Vis~k~~~~s~tVCp~~~d~~~~~T~~~lg~CVnY~LYGiTGtGVf~~s~~~~~s~Q~f~yDs~Gnl~gf~d-~tn~~Y~  664 (1359)
T 6Q04_B          586 GITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYS-DDGNYYC  664 (1359)
T ss_dssp             EEEEESSSSCCCEEECCCCCTTSCSGGGTTSEEEEEETTEEEEEEEEECCCCSCGGGCEEECTTSCEEEEEC-TTSCEEE
T ss_pred             EEEeEcCCCcCccCCCccccCCCCcchhcCceeEEEecceeeeeEEEecCceeecceeeEEeCCCCEEEEEe-CCCCEEE
Confidence            9999999999999998     667999999999999999999999999999999999999999999999999 8999999


Q sp|P0DTC2|SPIK  587 ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV--YSTGSNVFQTRAGCLIGAEHVNN-SYECD  663 (1273)
Q Consensus       587 itpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrv--ystgsnvfqtragcligaehvnn-syecd  663 (1273)
                      |.||..|+|||+++++  ++.+|+||++++|.+|+...+..+.+|.||+  +++..+.|||-+||++||++.+. .+|||
T Consensus       665 I~PC~sg~VSV~y~~~--s~e~AlLf~~l~C~~v~~~~~~~~~~~~~~l~~~~~~~~~fdT~~GCVvnA~n~t~~V~~C~  742 (1359)
T 6Q04_B          665 LRACVSVPVSVIYDKE--TKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFVEDCK  742 (1359)
T ss_dssp             EECCCCEEEEEEEETT--TTEEEEEEETCCGGGC---------------------CCCEEETTEEEESEEEEEEEESSCS
T ss_pred             EeeceEEeeeEEEcCC--CCCeEEEEccccccHhhcceeeccCCCccccccccCCCCCCCCccceeeeceecCCceeeCC
Confidence            9999999999999998  8999999999999999999999999999998  77788999999999999999988 89999


Q sp|P0DTC2|SPIK  664 IPIGAGICASYQTQTNSPR-RARSVAS-QSII--AYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCT  739 (1273)
Q Consensus       664 ipigagicasyqtqtnspr-rarsvas-qsii--aytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdct  739 (1273)
                      +|+|.|+|+.|.+...+.| +.|++.. ..+.  +|+|.+-. .++.+++..|.||+||||+|++|-++++|.|.+|||.
T Consensus       743 LplG~glC~~y~~~s~~~~r~~~~~~~~~~l~~~~y~~P~~~-~~~~~~~~~i~IP~nFt~~v~~EyiQ~~~~kv~iDC~  821 (1359)
T 6Q04_B          743 LPLGQSLCALPDTPSTLTPASVGSVPGEMRLASIAFNHPIQV-DQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCK  821 (1359)
T ss_dssp             SEEETTEEEECCCC------------CCEEEEEECCCCCEEC-CCCSSSCEEEEECSEEEEEEEEEEEECCCCEEEECHH
T ss_pred             CCCCceeecCCCCCCCCCCcccCCCCCceEEEEEeecCCeee-cccCCCCeeEEcccceEEEEEEEEEeecCCceEEech
Confidence            9999999999998774433 3343333 3344  77787766 7888999999999999999999999999999999999


Q sp|P0DTC2|SPIK  740 MYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF-GGFNFSQILPDPS---KPSKR  815 (1273)
Q Consensus       740 myicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdf-ggfnfsqilpdps---kpskr  815 (1273)
                      +|+||++.+|.+||.|||+||..+|+||.|.+.++|.+..+++..+++-++.+-+..| |+|||+.+||...   ++++|
T Consensus       822 ~YVC~~~~~C~~lL~qYgs~C~~I~~aL~~~~~~~d~~~~~~~~~~~~~~~~~~~~~f~~~~N~s~ll~~~~~~~~~~~R  901 (1359)
T 6Q04_B          822 QYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSAR  901 (1359)
T ss_dssp             HHHHTTCHHHHHHHGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEECCCCTTTTTTSCCTTTSBC--------CC
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhccccccCCCcCCCCCCcccceeccCCCCCCCccce
Confidence            9999999999999999999999999999999999999999999999999998888887 5799999999875   34689


Q sp|P0DTC2|SPIK  816 SFIEDLLFNKVTLADAGFIKQYGDCLGDI--AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAA  893 (1273)
Q Consensus       816 sfiedllfnkvtladagfikqygdclgdi--aardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaa  893 (1273)
                      |+||||||+||.+.+.||...|+.|....  ..+||+|||.+||+.||||..++||.++|+.+++.+....||++|..++
T Consensus       902 S~ieDLLF~Kv~~~~~G~~~~y~~c~~g~~~~i~Dl~caq~~NGi~VLP~v~~~~le~~Yt~SdvG~l~~~r~e~G~tsa  981 (1359)
T 6Q04_B          902 SAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSF  981 (1359)
T ss_dssp             BHHHHHHHHTSCCCCCCTTTHHHHHHHTCCSSTTCTTTTHHHHTEEEECCSSCHHHHHHHHHHHHTTHHHHSSSSSSSCE
T ss_pred             eHHHHHhcceeeeCCCCcccChhhhcccCCccHHHHhheeEeCCEeecCCccCHHHHHHHHHHHHHhhhcccccccCCcc
Confidence            99999999999999999999999999555  8999999999999999999999999999999999988888999999999


Q sp|P0DTC2|SPIK  894 LQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAI  973 (1273)
Q Consensus       894 lqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai  973 (1273)
                      ..|||++++.+|+|+++++|++|.+|||.|||.||.|||.||+.+.++++||.|+|++||+++++|++|..||+.|||||
T Consensus       982 aaIpfs~~Vy~RLN~l~~~~~vL~~nq~~Ia~sFN~AI~~iq~Gf~t~~~Al~kIq~vVN~~~~aLs~L~~qLn~nFgAI 1061 (1359)
T 6Q04_B          982 AAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAI 1061 (1359)
T ss_dssp             EECCHHHHHHHHHHTTTCCHHHHHHTHHHHHHHHHHHHHTTTTCCSTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred             ccCCchHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  974 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFP 1053 (1273)
Q Consensus       974 ssvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfp 1053 (1273)
                      ||.+++|+.|||++||++|+||||+|||.+|++||+|||+|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+|
T Consensus      1062 Sssi~gI~~RLd~lEA~iqvdrlInGRL~aLnafVtq~l~~~~~v~~sr~LA~qKiNECVKSQS~R~gFCGnGtHi~S~~ 1141 (1359)
T 6Q04_B         1062 SASIGDIIQRLDPPEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFV 1141 (1359)
T ss_dssp             CSCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTSSSSEEEEEEE
T ss_pred             hhcHhHHHHhcchHHHHhCCChhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCeeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1054 QSAPHGVVFLHVTYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNG-----THWFVTQRNFYEPQIITTDNTFVSGN 1125 (1273)
Q Consensus      1054 qsaphgvvflhvtyvpaqeknfttapaichd---gkahfpregvfvsng-----thwfvtqrnfyepqiittdntfvsgn 1125 (1273)
                      |.||+|++|+|++|+|.+.++.+++|.+|++   +++..|+.|.|+.+.     .+|++|.|++|||..||.+|+. --.
T Consensus      1142 q~AP~Gi~F~H~~~~Pt~~~~V~a~~GlC~~~~~~~~~~p~~g~~v~~~~~~~~~~~~~T~r~~y~P~~~t~~dv~-i~s 1220 (1359)
T 6Q04_B         1142 VNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTK-YVA 1220 (1359)
T ss_dssp             EEETTEEEEEEEEEEEESCEEEEEESCEEESSSTTCEEEESSEEEEEC-------CEEEEETTEEEEECCCTTSEE-EEC
T ss_pred             eccCCeEEEEEEEeccCceeEEEEEeEEecCCCCCceeeccCeEEEEeCCceeeceEEEeCCccccCccCCccCEE-EEC
Confidence            9999999999999999999999999999996   689999999999876     5799999999999999999955 577


Q sp|P0DTC2|SPIK 1126 CDVVIGIVNNTVYDPL--QPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1203 (1273)
Q Consensus      1126 cdvvigivnntvydpl--qpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqel 1203 (1273)
                      |||....+|+++..|+  +|+...|+|||+|+|||+++...|+.+++.+|++++|++.||++|+|+.|+||+++|||++|
T Consensus      1221 c~V~y~n~~~~~l~~~v~~pdyiDf~~el~~~~~n~~~~~p~l~~l~~~N~T~LNLt~EI~~Lq~~i~~LN~s~idLe~L 1300 (1359)
T 6Q04_B         1221 PQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDLTYEMLSLQQVVKALNESYIDLKEL 1300 (1359)
T ss_dssp             CCTTSEEECSSCCTTTCC--------------------------------------------------------------
T ss_pred             CcceeEecCCCCCCCccCCCCCCChHHHHHHHHhcCCCCCCCCCccccceeeecchHHHHHHHHHHHHHHHhcCCCHHHh
Confidence            8999999999999984  67999999999999999999888888899999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1204 GKYEQYIKWPWYIWLGFIAGL 1224 (1273)
Q Consensus      1204 gkyeqyikwpwyiwlgfiagl 1224 (1273)
                      ++||+||||||||||||-.|-
T Consensus      1301 n~~e~YiKWPWYvWL~~~~~~ 1321 (1359)
T 6Q04_B         1301 GNYTYYNKGSGRENLYFQGGG 1321 (1359)
T ss_dssp             ---------------------
T ss_pred             CceeEEeccCchhheeecCCC
Confidence            999999999999999998763


No 4
>5I08_C Spike glycoprotein; coronavirus, glycoprotein, prefusion, VIRAL PROTEIN; 4.04A {Human coronavirus HKU1 (isolate N5)}
Probab=100.00  E-value=1.5e-199  Score=1685.13  Aligned_cols=1142  Identities=29%  Similarity=0.491  Sum_probs=772.9  Template_Neff=4.000

Q sp|P0DTC2|SPIK   30 NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG---TKRFDNPVLPFNDGVYFASTEKSNI------  100 (1273)
Q Consensus        30 nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng---tkrfdnpvlpfndgvyfasteksni------  100 (1273)
                      -+-.+|+||||..++++..+-.|+||.+.-++.+-.-   .+|++-   --.++++..||+||+++...+.+|-      
T Consensus        29 vs~~~G~yYPd~rvysN~TlL~qglfp~~gs~~~~y~---~~~t~~~~~~~~y~~~~~~F~dGifvkv~~~~n~t~~~~~  105 (1299)
T 5I08_C           29 VSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLA---LKGSIYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLY  105 (1299)
T ss_dssp             TTSSSSCBCCTTEECCSEEEEEEEEECCTTCEEEECC---CBCSSCEEGGGGSTTTEEECSSEEEEEEECCCEESSSCEE
T ss_pred             cccceeEEEecceEEeceeeeeeCeecCCCCceeeee---eecccccccceecCCCcccccCcEEEEeeecccCCCCccc
Confidence            3556899999999999999999999999988876542   233332   3467888999999999998887764      


Q sp|P0DTC2|SPIK  101 --IRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD  178 (1273)
Q Consensus       101 --irgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmd  178 (1273)
                        -..++||+|.+...++++|+++-+...|.+|.|..|..|.+.+++  |..+..  +++. ....+|+|.|. +.|-+|
T Consensus       106 ~~~pa~~fGsTF~N~s~tvVI~P~~~~~~it~C~~~vC~~p~~~~~p--~~~~~~--~~~~-~d~~~~~~~~~-~nfT~d  179 (1299)
T 5I08_C          106 SEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKS--KGSIRN--ESWH-IDSSEPLCLFK-KNFTYN  179 (1299)
T ss_dssp             CCCCCEEEESSCSTTSCEEEEEEETTEEEEEEECCCCCSSCCBCCSS--SCCSCC--CTTS-TTCSCCCEEEE-EEEECC
T ss_pred             eecceeEEeccccCCcEEEEEeCCCceEEEEEEEEEecCCCceEEec--CCCccc--eeee-EeCCCCeEEEe-eccccc
Confidence              356789999999999999999999999999999999999987776  332222  3334 56778888653 444343


Q sp|P0DTC2|SPIK  179 LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGW  258 (1273)
Q Consensus       179 legkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgw  258 (1273)
                      ...  ..|    .|.|++.||.|-+|..+...+      ..|     +...++|...+.+-   .+-|+..++   ++.+
T Consensus       180 ~~~--~~~----~f~F~~~dG~f~~Yyad~~~~------~~f-----~f~~~~~~~~~~yy---vip~~~~~~---~~~~  236 (1299)
T 5I08_C          180 VSA--DWL----YFHFYQERGVFYAYYADVGMP------TTF-----LFSLYLGTILSHYY---VMPLTCNAI---SSNT  236 (1299)
T ss_dssp             TTC--SEE----EEEEEEETTEEEEEEESSCSS------BEE-----EEEEECCSCCCEEE---ECCBCSTTS---SSSG
T ss_pred             ccc--eee----EEEEEEeCCEEEEEEeccCCC------cce-----eecccceeecceee---eceeeccCC---CCCC
Confidence            322  111    299999999998875543222      111     11111232222222   333444444   5667


Q sp|P0DTC2|SPIK  259 TAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPF  338 (1273)
Q Consensus       259 tagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpf  338 (1273)
                      ....++|||++|.+|+|||+|+.||.|++||||+-|+++|-||..+||.+++|+|++|+||+||...++|.+.....|+|
T Consensus       237 ~~~~~~~~v~~L~~~~~Ll~fd~~G~It~AvDC~~~~~sEL~C~t~Sf~~~tGVY~lS~y~aqP~~~V~~~~~~~~~C~~  316 (1299)
T 5I08_C          237 DNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPDCDI  316 (1299)
T ss_dssp             GGCCCCEEEEECEEEEEEEEECTTCCEEEEECGGGCHHHHHHHHHTSSSCCSCEEEEC--------CEEECCSSCCCCCH
T ss_pred             CccceeEEEeecccceEEEEeCCCCeEeEEEecccCcchhheeeecccCCCCCeeecCCeEEEeeeEEEEecCCCCCCCH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999899999


Q sp|P0DTC2|SPIK  339 GEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKI  418 (1273)
Q Consensus       339 gevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgki  418 (1273)
                      .+++++.++.++|.|.|+.++||..|+++|++..++++|+|||+||.||.+.||..|++|.|.|..+..++++||++|-|
T Consensus       317 ~~~~~~~~~P~p~~w~R~~f~nCnfn~s~Lls~~~~~~f~C~~ispskl~~mCfsSvtiD~Faip~s~~~~L~~g~~g~i  396 (1299)
T 5I08_C          317 DNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFL  396 (1299)
T ss_dssp             HHHHTCSEEECGGGCEEEEECSCEECHHHHHHTSEEEEEEEESSCHHHHHHCCCSCEEEEEEECCSTTGGGGSSSCCSSC
T ss_pred             HHHhhCCCCCCccceEEeEEecCCCCHHHHHhhceeeeeeeeCCCHHHhcccccCeeEEEEEeccCcchHhcCCCCCcHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  419 ADYNYKLPDDFTGCVIAWNSNNLDSKV----GGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCN-------------  481 (1273)
Q Consensus       419 adynyklpddftgcviawnsnnldskv----ggnynylyrlfrksnlkpferdisteiyqagstpcn-------------  481 (1273)
                      ++||||+|++|+||+++|+-.+.+..+    -++||.-|+. +..++++.++..+..-..++++-|.             
T Consensus       397 ~~~NYkl~~~~~sC~l~~~~~~~~vt~t~~nps~~n~ry~~-~~~~~~~hdv~Ys~~cf~~~~~~cPC~~p~~~~~~~~~  475 (1299)
T 5I08_C          397 QSSNYKIDISSSSCQLYYSLPLVNVTINNFNPSSWNRRYGF-GSFNLSSYDVVYSDHCFSVNSDFCPCADPSVVNSCAKS  475 (1299)
T ss_dssp             CCCCCCCCCSSSEEEEEEEEESSSCEEECCCCSCCTTTCCC-CCCSSEEECCCSCCCCCTTCCCCCCC------------
T ss_pred             HhccccCCCCCCceEEEEEcccccceecCCCcccchhccCc-cccCCCccceeeeccccccCCCCCCCCChhhcccCcCC
Confidence            999999999999999999966655444    3567766665 6667888888888777766655443             


Q sp|P0DTC2|SPIK  482 --------------------------------GVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL------------  517 (1273)
Q Consensus       482 --------------------------------gvegfncyfplqsygfqptngvgyqpyrvvvlsfel------------  517 (1273)
                                                      +..+..|+-+...+.....-|+|++.+++.|++.+.            
T Consensus       476 ~~~~~~~~~~t~~r~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~vg~g~~c~g~~V~~~k~g~~~~~~~c~c~  555 (1299)
T 5I08_C          476 KPPSAICPAGTKYRHCDLDTTLYVKNWCRCSCLPDPISTYSPNTCPQKKVVVGIGEHCPGLGINEEKCGTQLNHSSCFCS  555 (1299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCcceecccccccccccccccccCCCCCCccCCCCCCCceeeeecccccCeeEEEeeecCCCCCCCCcccC
Confidence                                            111344554554444455679999999999999888            


Q sp|P0DTC2|SPIK  518 ---------------------------LHAPATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTE-SNKKFLPFQQFG  566 (1273)
Q Consensus       518 ---------------------------lhapatvcgp---kkstnlvknkcvnfnfngltgtgvlte-snkkflpfqqfg  566 (1273)
                                                 ...++|+|+.   +.+++++.++||++|..|.||+||+++ ++..++.+|.+.
T Consensus       556 ~~af~gws~dsc~~~~~~~~~~~~~~~~~~t~Tvcp~~~~~~~snI~Ln~CVdYNIYG~TGtGVItnvt~s~~~~~qGL~  635 (1299)
T 5I08_C          556 PDAFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLL  635 (1299)
T ss_dssp             ---CCSCCEEECCBTTEEEEEEEEEESSSSSSSCEECTTCCCCCCCCCSSSEEEEETTEEEEEEEEECCCCCCCTTTCEE
T ss_pred             ccccccccccccccCCccccccceeccCCCCCCcCCCccccCCceeEeCeeEeEEeCCCeeEEEEEeCCCceeecCCcEE
Confidence                                       5668999998   467899999999999999999999999 444467788888


Q sp|P0DTC2|SPIK  567 RDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646 (1273)
Q Consensus       567 rdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtr  646 (1273)
                      .|-+.-..++|++.++++..|+||..+.++++..|.  +...+.+++.++|.++.....          +....+-|+|.
T Consensus       636 ydssGdLlgFKn~ttg~iYsV~PC~~v~vqvVv~~~--~~vgall~~n~~cs~~~~n~~----------~~~~~~~~~t~  703 (1299)
T 5I08_C          636 YDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQN--SSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSY  703 (1299)
T ss_dssp             EETTEEEEEEECTTTCCEEEEECCCCCCEEEECCCC-----CEEEEETCCHHHHHHTC----------------CCEECS
T ss_pred             EeCCCCEEEEEeCCCCcEEEEEeCcccceEEEEeCC--CcceeEEeecCcccceeecee----------eecCccceecc
Confidence            888888889999999999999999999999998876  344689999999988765311          22222559999


Q sp|P0DTC2|SPIK  647 AGCLIGAEHVNN--SYECDIPIGAGICASYQTQTNSPRRARSVAS--QSIIAYTMSL-----GAENSVAYSNNSIAIPTN  717 (1273)
Q Consensus       647 agcligaehvnn--syecdipigagicasyqtqtnsprrarsvas--qsiiaytmsl-----gaensvaysnnsiaiptn  717 (1273)
                      .||.+++++...  ..+|+.|.|.|+|+.+.+.  +++++++..+  .++..| +..     -....+..+...|.||+|
T Consensus       704 ~gc~~~~~~~t~~~v~~c~~~~~~~~C~~~~~~--~~~g~~~~~~~~~~l~~~-~p~~~~~~~~~~~~~~~~~~IsIPtN  780 (1299)
T 5I08_C          704 LGCVLNAVNLTSYSVSSCDLRMGSGFCIDYALP--SSGGSGSGISSPYRFVTF-EPFNVSFVNDSVETVGGLFEIQIPTN  780 (1299)
T ss_dssp             SEEESSCBCCCSSBCSSCSCBCSTTEEEEC----------------CCEEEEC-CCCC---------------------C
T ss_pred             cceeeeceeccCCccccCccccCCceeeecCCC--CCCCCCCCcCCCeeeeEe-cceeeeecCCcccccceEEEEEccCC
Confidence            999999976644  7789999999999999877  5555554332  234443 221     011124445558999999


Q sp|P0DTC2|SPIK  718 FTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTP-P---  793 (1273)
Q Consensus       718 ftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktp-p---  793 (1273)
                      |||+|++|-++++|.|.+|||.+|+||++.+|.+||.|||+||..+++||.|.+..+|....+++..+++-++++ +   
T Consensus       781 FTisv~~EyiQt~~~kVsVDCa~YVCngn~~C~~lL~qYgs~C~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~  860 (1299)
T 5I08_C          781 FTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNT  860 (1299)
T ss_dssp             CCCCEEEECCCCCCCEEEECTTTTTCCSCTHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCC
T ss_pred             ceeEEEEEEeeccCCCeEEecceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHhccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988775 3   


Q sp|P0DTC2|SPIK  794 --IKDFGGFNFSQILPDPSK---PSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868 (1273)
Q Consensus       794 --ikdfggfnfsqilpdpsk---pskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltde  868 (1273)
                        +..+++|||+.+||.+..   +++||+||||||+||..+|.|+.+.|.+|.+...+|||+|||.|||+.||||++++|
T Consensus       861 ~~~~~~~~~N~s~ll~~~~~~~~~~~RS~IEDLLF~KV~t~glG~~~~Y~~Ct~g~~i~DL~CaQ~yNGi~VLP~v~d~~  940 (1299)
T 5I08_C          861 NLHSDVDNIDFKSLLGCLGSQCGSSSRSLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSET  940 (1299)
T ss_dssp             ----------------------------CHHHHGGGTSCCCHHHHHHHHHTTSSSCSCCTTHHHHHHSSEEEECCSSCHH
T ss_pred             CcccCCCCccchhhcccccCCCCCCcccHHHHHhcCceEeCCCChhHHHHHccCCccHHHHhcccccCeEEEeCCCCCHH
Confidence              378899999999998763   479999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  869 MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKL  948 (1273)
Q Consensus       869 miaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgkl  948 (1273)
                      |+|.||++|++|....|||+    |..||||+||.||+||+|+||+||.||||+|||.||.||+.||+.+.++++||.|+
T Consensus       941 ~~amYTasL~g~m~~gg~T~----aaaIPFa~~vq~RlN~v~lt~~VL~~NQk~iA~sFN~A~~~iq~~f~~~~~Al~ki 1016 (1299)
T 5I08_C          941 QISGYTTAATVAAMFPPWSA----AAGVPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKI 1016 (1299)
T ss_dssp             HHHHHHHHHHHHHHCTTTCS----SSSSCHHHHHHHHHTTSSCSSSHHHHTTTHHHHHHHHHHHHHHGGGGSCCSHHHHH
T ss_pred             HHHHHHHHHHHHhhccCchh----cccCchHHHHHHHhchhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997    55689999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  949 QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATK 1028 (1273)
Q Consensus       949 qdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatk 1028 (1273)
                      |||||++++||++|++||+.|||||||.++||++|||++||++||||||+|||.+|++||+|||+|++|+|||+.||..|
T Consensus      1017 Q~VVN~~~~aL~~L~~qL~~nFgAISssI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtQ~L~~~~evr~sr~LA~qK 1096 (1299)
T 5I08_C         1017 QSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEK 1096 (1299)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCCSSSSSCSTHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1029 MSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR 1107 (1273)
Q Consensus      1029 msecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvfvsngthwfvtqr 1107 (1273)
                      |.|||..||+|.+|||.|.|++|+||.||+|++|+|++|+|.+.++.+++|.+|+++ ++..|++|+|+.+...|++|.|
T Consensus      1097 INECVkSQS~R~gFCGnGtHi~Si~q~APnGi~FlH~~y~Pt~~~~V~a~~GlC~~~~~~~~~~~g~f~~~n~~~~~T~r 1176 (1299)
T 5I08_C         1097 VNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGS 1176 (1299)
T ss_dssp             CCCCCTSCCSCSSSSCSSCCSEEEEEEETTEEEEEEEC------------------------------------------
T ss_pred             HHHHHhcCCCCccccCCCeEEEeeeeccCCeEEEEEEEecCCeeeEEEEEeeEEecCCeeEEecCcEEEeeCCEEEEecc
Confidence            999999999999999999999999999999999999999999999999999999995 7999999999999999999999


Q sp|P0DTC2|SPIK 1108 NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN 1187 (1273)
Q Consensus      1108 nfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrln 1187 (1273)
                      ++|||..||.+|...-..|||....+|+++..+..|++..|+|||+|+|||+++...|+.++..+|++++|++.||++|+
T Consensus      1177 ~~y~Pr~~t~~d~v~~~sC~v~y~n~~~~~~~~~~p~~~df~~el~~~~~n~~~~~p~~~~~~~~n~t~LNLt~EI~~Lq 1256 (1299)
T 5I08_C         1177 SYYYPEPISDKNVVFMNSCSVNFTKAPFIYLNNSIPNLSDFEAELSLWFKNHTSIAPNLTFNSHINATFLDLYYEMNVIQ 1256 (1299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCCCccCeEEeccceeEEEEcChhhCCCCCCCCCChHHHHHHHHhcCCCCCCCCCcccccccceechHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999977888878899999999999999999


Q sp|P0DTC2|SPIK 1188 EVAKNLNESLIDLQELGKYEQYIKW-PWYIWLGFIAG 1223 (1273)
Q Consensus      1188 evaknlneslidlqelgkyeqyikw-pwyiwlgfiag 1223 (1273)
                      |+.|+||+++.+++.+.+.|.|+|| |||+||..+..
T Consensus      1257 evIknLN~S~~ilE~l~~~e~YVkwdpwwVwL~i~l~ 1293 (1299)
T 5I08_C         1257 ESIKSLNGSGYIPEAPRDGQAYVRKDGEWVLLSTFLG 1293 (1299)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHhcCCCCCCCCCccceecccChhHHHHhhhh
Confidence            9999999999999999999999998 99999976543


No 5
>5X5F_B S protein; MERS-CoV, spike glycoprotein, prefusion, single; 4.2A {Middle East respiratory syndrome coronavirus}
Probab=100.00  E-value=6.1e-198  Score=1670.09  Aligned_cols=1163  Identities=31%  Similarity=0.500  Sum_probs=888.5  Template_Neff=3.800

Q sp|P0DTC2|SPIK   14 QCVNL-TTRTQLPPAYT----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG--T-------KRF   79 (1273)
Q Consensus        14 qcvnl-ttrtqlppayt----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng--t-------krf   79 (1273)
                      .|... -...-+.+.++    -+-.+|+||||..++++..+-.|+||.+.-++.+-.-   ++|++.  +       -.+
T Consensus        12 ~C~~~~~~~~~~~~~~~~~idvs~~~G~yYP~~rvysN~TlL~qglfP~~gs~~~~y~---~~~t~~~~~~~~~~~~~~y   88 (1323)
T 5X5F_B           12 ACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYV---YSAGHATGTTPQKLFVANY   88 (1323)
T ss_dssp             BCCCEEECGGGTCCCCCCCCCGGGTTTCBCCSSCCBSSCEEEEEEEECCTTCCCEEEC---CEECCBCSSCBCSEEECSG
T ss_pred             cceecccccccCCCCCCcceecccCceeEeeCCeeeeeeeeeeeceecCCCCcceEEE---EEecCCCCCCCcceeeecc
Confidence            36554 23333445555    3446899999999999999999999999988876532   333333  1       356


Q sp|P0DTC2|SPIK   80 DNPVLPFNDGVYFASTEKSNIIR-----------------GWIFGTTLDSKT---Q------SLLIVNNATNVVI-----  128 (1273)
Q Consensus        80 dnpvlpfndgvyfasteksniir-----------------gwifgttldskt---q------sllivnnatnvvi-----  128 (1273)
                      +.+..||+||+++...+..|--.                 .++||+|.+...   +      +++|+++-.+.++     
T Consensus        89 ~~~~~~F~dGifvkv~~~~n~tg~~~~~~~~~~~~~~~ypa~~fGstF~Nts~~~~~~~~~~tlVI~P~~~g~~~~~~~~  168 (1323)
T 5X5F_B           89 SQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYC  168 (1323)
T ss_dssp             GGCCEECTTCEEEEESTTTTSEEECSSSTTCEEEEECCCCCEEEESCEEECTTSCEEEECSEEEEEEEETTTTEEEEEEE
T ss_pred             CCChhhccCeEEEEEeeeeccCCCeeeCCccccchhhhccceEeeccccCCCCCccccccceEEEEecCCCCchheeeee
Confidence            77899999999998877666422                 256999998666   5      8889888876543     


Q sp|P0DTC2|SPIK  129 --KVCEFQFCNDPFLGVYYHKNN---KSWMES---------EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVF  194 (1273)
Q Consensus       129 --kvcefqfcndpflgvyyhknn---kswmes---------efrvyssannctfeyvsqpflmdlegkqgnfknlrefvf  194 (1273)
                        ...+..-|..|..-+++.-+.   .+|..+         +++.|....+|+|.|. +.|-+|...  ..|-    |.|
T Consensus       169 ~~~prtit~C~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nfT~d~~~--~wf~----~~F  241 (1323)
T 5X5F_B          169 ILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYT-YNITEDEIL--EWFG----ITQ  241 (1323)
T ss_dssp             EEEECCSBTSTTSTTCCCCCEEECHHHHSCTTCCCTTHHHHHHHHHEEEEEEEEEEE-EECCCCCCC--EEEE----EEE
T ss_pred             cccccccCcCCCCCeEeeeeecCCCCccCCCCcccccccccchhHhcccCCceEEEe-eecCcchhh--heee----EEe
Confidence              322333455555555432221   345333         6778889999999875 344333211  1111    899


Q sp|P0DTC2|SPIK  195 KNID-GYFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYL  270 (1273)
Q Consensus       195 knid-gyfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgyl  270 (1273)
                      +..| |.|-+|.-++..+.   ..-+| |+..+.+..               .+-|+..++   .+.+. ..++|||++|
T Consensus       242 ~~~~~G~f~~Y~~d~~~~~~f~f~~~~-~~~~~~yy~---------------v~p~~~~~~---~~~~~-~~~~~~v~~L  301 (1323)
T 5X5F_B          242 TAQGVHLFSSRYVDLYGGNMFQFATLP-VYDTIKYYS---------------IIPHSIRSI---QSDRK-AWAAFYVYKL  301 (1323)
T ss_dssp             ETTEEEEEESTTTCTTTCCBEEEEEEC-CCSCCCEEE---------------ECCEEECCC---GGGCC-EECCEEEEEC
T ss_pred             eecCceeEEEEEEeccCCcceeccccc-ceeccceee---------------eeeeeecCC---ccccc-eeEEEEEEEc
Confidence            9999 99999876654332   12222 444444443               233444444   45566 7889999999


Q sp|P0DTC2|SPIK  271 QPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASV  350 (1273)
Q Consensus       271 qprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasv  350 (1273)
                      .+|+|||+|++||.|++||||+-|+++|-||..+||.+++|+|++|+||+||....+|.++. ..|+|.++++ .++.++
T Consensus       302 ~~~~yLl~fd~nG~I~~avDC~~~~~seL~C~~~sf~~~tGVY~~S~y~aqp~~~v~~~~~~-~~C~~~~~~~-~~~P~p  379 (1323)
T 5X5F_B          302 QPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEG-VECDFSPLLS-GTPPQV  379 (1323)
T ss_dssp             EEEEEEEEECTTSCEEEEEETTSCHHHHHHHTTTCSCCCSSEECCCCCBBCCCSCEECC----CCCCCHHHHS-BCCCBG
T ss_pred             cceeEEEeecCCCeEEEEEecCCCccchheeEeceecCCCCeeecCCEEEEeeeEEEEecCC-CCCCchHHhc-CCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999 9999999999 889999


Q sp|P0DTC2|SPIK  351 YAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFT  430 (1273)
Q Consensus       351 yawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddft  430 (1273)
                      |.|.|+.++||..|+|+|++...+++|+||||+|.||.++||..|++|.|.|..+..++++||++|-|++||||+|+||+
T Consensus       380 ~~w~R~~f~nCnfN~s~Lls~~~~~sf~C~gIspskLa~mCfsSvtiD~Faip~s~~~~Lq~G~~G~i~~yNYKld~~~~  459 (1323)
T 5X5F_B          380 YNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNP  459 (1323)
T ss_dssp             GGCEEEEECSEEECHHHHHHHSEEEEEEEESSCHHHHHHSCCSCEEEEEEECCGGGGGGSCTTCCSHCCCCCCCCCSSSC
T ss_pred             ceeEEeEEecCCCcHHHHHhhceeeeeeecCCCHHHHcccccceeeEEEEecCccccceecCCCCChhhhccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  431 GCVIAWNSNNLDSKV--GGNYNYLYRLFRKSNLKPFERDISTEI---YQAGSTPCNGV-EGFNCYFPLQSY---------  495 (1273)
Q Consensus       431 gcviawnsnnldskv--ggnynylyrlfrksnlkpferdistei---yqagstpcngv-egfncyfplqsy---------  495 (1273)
                      ||+++|+-...+..+  -.+|+|+.|-+++..     ++. ++.   ..+ .+-|+-. ...+|+.|...+         
T Consensus       460 sC~l~y~~pa~~vn~t~p~~y~yi~~~~~~~~-----~~~-~~~~~~~~~-~~~cpc~~~~~~~~~~~~~~~~~~~~~~~  532 (1323)
T 5X5F_B          460 TCLILATVPHNLTTITKPLKYSYINKCSRLLS-----DDR-TEVPQLVNA-NQYSPCVSIVPSTVWEDGDYYRKQLSPLE  532 (1323)
T ss_dssp             EEEEEEECCSSCCSBCCCSEEEEEEEEEEECT-----TSS-CEEECCCCT-TSCCTTTTTSCSSCSSTTCEEEEECCTTT
T ss_pred             ccEEEEEcCccccccCCCccceeeeeeeccCC-----CCC-Ccchhhccc-cccCCCCccCCccccCCCCcccccccccc
Confidence            999999955533322  445666555555433     222 222   111 1111100 012344443222         


Q sp|P0DTC2|SPIK  496 --GFQP----TNGVGYQPYRVVVLSFELLHAPATVCGP-----KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQ  564 (1273)
Q Consensus       496 --gfqp----tngvgyqpyrvvvlsfellhapatvcgp-----kkstnlvknkcvnfnfngltgtgvltesnkkflpfqq  564 (1273)
                        |..+    ..++++|++.++|++++..+.++|||++     |.+|.++.++||++|+.|+||+||++|++..+..+|.
T Consensus       533 ~~~~~~~~~~~~~~~~~~~g~~Vis~k~~~~s~tVCp~~~d~~~~~T~~~l~vCV~YnlYGiTGtGVf~~sn~~~~~~Q~  612 (1323)
T 5X5F_B          533 GGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQR  612 (1323)
T ss_dssp             TSSEEEEEEEEEECCSSCEEEEEEECCCCSSCCCEEECC------CCSSSCCCSSCEECSSCCCCCCCEECCCCSCSSSC
T ss_pred             CCchhcccccccccccceeEEEEEEeEcCCCccccCCCcccCCcCCcchhcCceeeEEecceeeeEEEEecCccccccee
Confidence              2233    4589999999999999999999999988     5668999999999999999999999999999999999


Q sp|P0DTC2|SPIK  565 FGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV--YSTGSNV  642 (1273)
Q Consensus       565 fgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrv--ystgsnv  642 (1273)
                      |..|-.+-..+.|| +++++.+|+||..|+|||+++++  ++..|+||++++|.+|...+|..+.+|.|+.  ++...+.
T Consensus       613 f~yds~Gnl~gfk~-~tg~vY~I~PC~s~~VSViy~~~--s~e~AlLf~~v~C~~v~t~~~~~~~~~~~~~~~~~~~~~~  689 (1323)
T 5X5F_B          613 FVYDAYQNLVGYYS-DDGNYYCLRACVSVPVSVIYDKE--TKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGP  689 (1323)
T ss_dssp             CCBCSSSCBCCCCC-SSSCCEECCCCCBCCCBEECCTT--TTCCCCBCSSCCTTTCCTTCTTBSCSSSSCCC--------
T ss_pred             EEEcCCCCEEEEEe-CCCCEEEEeeceeeceeEEEeCC--CCceEEEeCCccccceecceeeecCCCchhcccccCCCCC
Confidence            99999999999999 99999999999999999999998  7799999999999999999999999999998  7778889


Q sp|P0DTC2|SPIK  643 FQTRAGCLIGAEHVNN-SYECDIPIGAGICASYQTQTNS-PRRARSVAS-QSII--AYTMSLGAENSVAYSNNSIAIPTN  717 (1273)
Q Consensus       643 fqtragcligaehvnn-syecdipigagicasyqtqtns-prrarsvas-qsii--aytmslgaensvaysnnsiaiptn  717 (1273)
                      |||-+||++||++.+. .+|||+|+|+|+|+.|.+...+ +|+.|++.. ..+.  +|+|.+-. .++.+++..|.||+|
T Consensus       690 fdT~~GCVvnA~n~t~~V~~C~lplG~glC~~y~~~s~~~~r~~~~~~~~~~l~~~~y~~p~~~-~~~~~~~~~i~IP~n  768 (1323)
T 5X5F_B          690 LQTPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTLTPRSVSSVPGEMRLASIAFNHPIQV-DQLNSSYFKLSIPTN  768 (1323)
T ss_dssp             ---CBCCSSSCBSSCCCCCCCCCCCTTCCSSSCCCCCC------------CCCCCCCCCCCCCC-CCCCSSCCEEEECCC
T ss_pred             CCCccceeeecccCCCceeeCCCCCCcceecCCCCcCcCccccccCCCCceEEEEEeecCCeee-cccCCCCeeEEcccc
Confidence            9999999999999988 8999999999999999988755 344444443 3344  67777765 778889999999999


Q sp|P0DTC2|SPIK  718 FTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF  797 (1273)
Q Consensus       718 ftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdf  797 (1273)
                      |||+|++|-+.++|.|.+|||.+|+||++.+|.+||.|||+||..+|+||.|.+.++|.+..+++..+++-++.+-+..|
T Consensus       769 Ft~~v~~EyiQ~~~~kv~iDC~~YVC~~~~~C~~lL~qYgs~C~~I~~aL~~~~~~~d~~~~~~~~~~~~~~~~~~~~~f  848 (1323)
T 5X5F_B          769 FSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGF  848 (1323)
T ss_dssp             CCCCCCCCBCCCCCCCCEECTTSSSSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCCCSCC
T ss_pred             eEEEEEEEEEeecCCceEEechhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhccccccCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888887


Q sp|P0DTC2|SPIK  798 -GGFNFSQILPDPS---KPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDI--AARDLICAQKFNGLTVLPPLLTDEMIA  871 (1273)
Q Consensus       798 -ggfnfsqilpdps---kpskrsfiedllfnkvtladagfikqygdclgdi--aardlicaqkfngltvlpplltdemia  871 (1273)
                       |+|||+.+||.+.   ++++||+||||||+||.+.|.||.+.|+.|....  ..|||+|||.+||+.||||..++||.+
T Consensus       849 ~~~~N~s~ll~~~~~~~~~~~RS~iEDLLF~KV~t~g~G~~~~Y~~C~~g~~~~i~DL~CAQ~yNGi~VLP~v~~~~le~  928 (1323)
T 5X5F_B          849 GGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEA  928 (1323)
T ss_dssp             BTTBCCTTSCCC--------CCCHHHHHHHHSSCCCCCCSSSHHHHHHTC--------CCTTTSCSEECCCCSSCHHHHH
T ss_pred             CCCcccceeccCCCCCCCccceeHHHHHhcceeeeCCCCcccChhhhcccCCccHHHHhheeEeCCEeecCCcCCHhHHH
Confidence             5799999999876   3468999999999999999999999999999554  899999999999999999999999999


Q sp|P0DTC2|SPIK  872 QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDV  951 (1273)
Q Consensus       872 qytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdv  951 (1273)
                      +|+.+++.+....||++|..++..|||++++.+|+|++++++++|.+|||.|||.||.|||.||+.+.++++||.|+|++
T Consensus       929 ~yt~SdvG~l~~~r~e~G~tsaaaIpfs~~Vy~RLN~l~~~~~vL~~nq~~Ia~sFN~aIg~iq~gf~t~~~Al~kIq~v 1008 (1323)
T 5X5F_B          929 AYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDA 1008 (1323)
T ss_dssp             HHHHHHHHHHHHHTTCSCCC-CCCCCHHHHHHHHHHHSSCCCHHHHHTTCCSHHHHHHHHHHHHHCCTTTCTTHHHHHHH
T ss_pred             HHHHHHHHhhhcccccccCCccccCCchHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  952 VNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE 1031 (1273)
Q Consensus       952 vnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmse 1031 (1273)
                      ||+++++|++|..||+.|||||||.+++|+.|||++||++|+||||+|||.+|.+||+|||+|++|+|+|+.||..|+.|
T Consensus      1009 VN~~~~als~L~~qLn~~FgAISssi~gI~~RLd~lEa~iqvdrlInGRL~aLn~~Vtq~l~~~~~v~~sr~LA~qKiNE 1088 (1323)
T 5X5F_B         1009 VNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNE 1088 (1323)
T ss_dssp             HHHHHCCCCCHHHHHSSSCSSSCSSSTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHhhhcccchhcHhHHHHHHHHHHHHhCCChhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1032 CVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNG-----THWF 1103 (1273)
Q Consensus      1032 cvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichd---gkahfpregvfvsng-----thwf 1103 (1273)
                      ||..||+|.+|||.|.|++|+||.||+|++|+|.+|+|.+.++.+++|.+|++   +++..|+.|.|+.+.     .+|+
T Consensus      1089 CVKSQS~R~gFCGnG~Hi~S~~q~AP~Gi~F~H~~~~Pt~~~~v~a~~GlC~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 1168 (1323)
T 5X5F_B         1089 CVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWS 1168 (1323)
T ss_dssp             CCCSCCSSSTTSCSSSEEECCBCCCSSSCBBCCEECCCCCCEEEECCSCCCCSSCCCCCCSSSCCCCSSSSCCCCSSSCC
T ss_pred             HHHhcccccCCCCCCeeeEEeeeccCCeEEEEEEEecccceeEEEEEEEEeecCCCCceeeccCeEEEEeCCceeeceEE
Confidence            99999999999999999999999999999999999999999999999999996   688999999999876     5699


Q sp|P0DTC2|SPIK 1104 VTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPL--QPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK 1181 (1273)
Q Consensus      1104 vtqrnfyepqiittdntfvsgncdvvigivnntvydpl--qpeldsfkeeldkyfknhtspdvdlgdisginasvvniqk 1181 (1273)
                      +|.|++|+|..||.+|+. --.|+|...-+|+++..|+  +|+...|+|||+|+|||+++...|+.++..+|+++.|++.
T Consensus      1169 ~T~r~~y~P~~~t~~~v~-i~sc~V~y~n~~~~~l~~~v~~p~yiDfn~el~~~~~n~~~~~p~l~~l~~fN~T~LNLt~ 1247 (1323)
T 5X5F_B         1169 YTGSSFYAPEPITSLNTK-YVAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDLTY 1247 (1323)
T ss_dssp             CCCCSSSCCCCCCCSSTT-SCC----------------------------------------------------------
T ss_pred             EeCCccccCccCCCCCEE-EECCcceEEecCCCCCCCccCCCCCCChHHHHHHHHhcCCCCCCCCCchhcceecccchHH
Confidence            999999999999999955 5778999999999999984  6899999999999999999988888889999999999999


Q sp|P0DTC2|SPIK 1182 EIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGF 1220 (1273)
Q Consensus      1182 eidrlnevaknlneslidlqelgkyeqyikwpwyiwlgf 1220 (1273)
                      ||++|+|+.|+||+++|||++|++||+|||||||+--|-
T Consensus      1248 EI~~Lq~~i~~LN~s~idLe~Ln~~e~YiKW~~~~~~~~ 1286 (1323)
T 5X5F_B         1248 EMLSLQQVVKALNESYIDLKELGNYTYYNKEFRLVPRGS 1286 (1323)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHhccCCHHHhCceeeeEeeeeecCCCC
Confidence            999999999999999999999999999999999987653


No 6
>6VSJ_A Spike glycoprotein, Carcinoembryonic antigen-related cell; MHV spike, CEACAM1a, Complex, Glycoprotein; HET: NAG; 3.94A {Murine coronavirus (strain A59)}
Probab=100.00  E-value=2.1e-195  Score=1649.54  Aligned_cols=1145  Identities=30%  Similarity=0.512  Sum_probs=889.4  Template_Neff=4.000

Q sp|P0DTC2|SPIK    9 PLVSSQCVNLTTRTQLP---PAYT-----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAI--HVSGTNGTKR   78 (1273)
Q Consensus         9 plvssqcvnlttrtqlp---payt-----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhai--hvsgtngtkr   78 (1273)
                      ++....|...-...-++   |.++     -+-.+|+||||..++|+..+-.|+||.+.-++.+-+-.-  |...  .--.
T Consensus        22 ~i~~~~C~~~~~~~~~~~~~~~~s~~~idvs~~~G~yYPd~rvysN~TlL~qGLFP~~gs~~~~Y~~sgt~~~s--~~~~   99 (1275)
T 6VSJ_A           22 YIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALRGTNSVS--LSWF   99 (1275)
T ss_dssp             CCSSBCCCCCSEECCCCCCCCCCCSCBCCCTTSTTCBCCTTCBCCSCCCEEEEEEECTTCBCCBCCCEESSEEC--GGGS
T ss_pred             cccCcceeEeecCCCCCCCCCCCcceeeeeecceeEEEeCCeEEeceeeeeccccCCCCCceeeEEeeccCCCC--cccc
Confidence            34555677653333333   3444     345689999999999999999999999998887654222  2222  1346


Q sp|P0DTC2|SPIK   79 FDNPVLPFNDGVYFASTEKSNI--------IRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNK  150 (1273)
Q Consensus        79 fdnpvlpfndgvyfasteksni--------irgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnk  150 (1273)
                      +++++.||+||+++...+.+|-        -..++||+|.+..+++++|+++-+...|.+|.|..|..|...+++.-+|.
T Consensus       100 y~~~~~~F~dGIfVkV~~~kn~t~~~~~~~ypa~~fGSTF~Nts~tvVI~P~~~~r~itvCq~~vC~~p~~~~~p~~g~~  179 (1275)
T 6VSJ_A          100 QPPYLNQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPYNGVIMASVCQYTICQLPYTDCKPNTNGN  179 (1275)
T ss_dssp             STTTSCCCSSCEEEEEECCGGGSCTTCCCSSCCEEEESSCSTTSCEEEECEETTEECCEEECCCBBSSCCEESSCCCSSC
T ss_pred             cCCcccccCCcEEEEeeeeccCCCCcchhccceeEEecccCCCceEEEEeCCCceeEeEEEEEEEcCCCeeEEccCCCCC
Confidence            7788999999999998887765        35678999999999999999999999999999999999999888744332


Q sp|P0DTC2|SPIK  151 SWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINL---VRDLPQGFSALEPLV  227 (1273)
Q Consensus       151 swmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinl---vrdlpqgfsaleplv  227 (1273)
                      +..+  ++. ....+|+|.|. +.|-+|...  ..|-    |.|+..||.|-+|..+...+.   ..-+| |...+.+. 
T Consensus       180 ~~~~--~~~-~d~~nc~f~~~-~nfT~d~~~--~~~~----~~F~~~dG~fy~Yyad~~~~~~f~f~~~~-~~~~~~yy-  247 (1275)
T 6VSJ_A          180 KLIG--FWH-TDVKPPICVLK-RNFTLNVNA--DAFY----FHFYQHGGTFYAYYADKPSATTFLFSVYI-GDILTQYY-  247 (1275)
T ss_dssp             TTCC--SSB-CCCSCCCEEEE-CCEECCTTC--SEEE----EEBCEETTEECCEECSSSSCBEECCCCCC-SSCCCEEE-
T ss_pred             ceee--ece-ecCCCCEEEEe-eeeccCccc--ceee----EEEEEcCCeEEEEEECCCcCcceeecccc-cceeceeE-
Confidence            3322  233 67889999764 455444322  1221    999999999988876644332   11222 33333333 


Q sp|P0DTC2|SPIK  228 DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT  307 (1273)
Q Consensus       228 dlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksft  307 (1273)
                                     .+-|+..++   .+.+  ..++|||++|.+|+|||+|++||.||+||||+-|+++|-||..+||.
T Consensus       248 ---------------v~~~~~~~~---~~~~--~~~~~~v~~L~~~~~ll~fd~~G~i~~avDC~~~~~~el~C~~~sf~  307 (1275)
T 6VSJ_A          248 ---------------VLPFICNPT---AGST--FAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSML  307 (1275)
T ss_dssp             ---------------ECCEECCCS---SCSC--CCCEEEEEEEEEEEEECCBCSSSCBCCCBCTTSCHHHHHHHHHTSSS
T ss_pred             ---------------EeeeeecCC---CCCC--cccEEEEEeccceeEEEEecCCCeEeEEEecccCccceeeeEecccc
Confidence                           233444333   2223  67899999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  308 VEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL  387 (1273)
Q Consensus       308 vekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl  387 (1273)
                      +++|+|++|+||+||....+|.++.+..|+|.++++|.++.++|.|.|+.++||..|+++|++..++++|+||||+|.||
T Consensus       308 ~~~GVY~~s~y~a~p~~~v~~~~~~~~~C~~~~~~~~~~~P~p~~w~R~~~~nCnfn~s~Ll~~~~~~~f~C~~ispskl  387 (1275)
T 6VSJ_A          308 PSTGVYELSGYTVQPVGVVYRRVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASKV  387 (1275)
T ss_dssp             CCSSCEECCCCCCCCCCCCCCCCCCCCBCCTHHHHTCSEEECTTSCEEEEECSCBCCHHHHHHHSEEEECCBSSCCTTTS
T ss_pred             CCCceeecCCeEEEeeeEEEEecCCCCCCCHHHHHhcCCCCCchhcEEeEEecCCCCHHHHHhheeeccceecCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  388 NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSK----VGGNYNYLYRLFRKSNLKP  463 (1273)
Q Consensus       388 ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldsk----vggnynylyrlfrksnlkp  463 (1273)
                      .++||..|++|.|.|..+..++++||++|-|++||||+|+||+||+++|+-...+..    --++||+-|+.-++..++|
T Consensus       388 ~~~CfssvtiD~F~ip~~~~~~l~~g~~g~i~~yNYkl~~~~~~C~l~~~~~~~~~~~t~~np~~~~~~~~~~~~~~f~~  467 (1275)
T 6VSJ_A          388 YGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTINNHNPSSWNRRYGFNDAGVFGK  467 (1275)
T ss_dssp             TTCCBSEEEEEEECCCSTTGGGGSTTCCSSHHHHTCCCCSSSCEEECEEEECTTTCEEECCCCCHHHHHHSCCTTTTTTT
T ss_pred             cccccCeeEEEEEeccchhceeecCCCCcHhHhccccCCCCCCceEEEEEcCcccccccCCCCccchhcccccccccccC
Confidence            999999999999999999999999999999999999999999999999996543322    2357888888888899999


Q sp|P0DTC2|SPIK  464 FERDISTEIY--QAGSTPCNG--V------------------EGFNCYF------------PLQSYGFQPTNGVGYQPY-  508 (1273)
Q Consensus       464 ferdisteiy--qagstpcng--v------------------egfncyf------------plqsygfqptngvgyqpy-  508 (1273)
                      +++|..-..+  ..+.+-|+.  .                  .|..|+-            |..+---+|+..+||+++ 
T Consensus       468 ~~~dvvy~~~~~~~~~~~cpC~~~~~~~~ct~~~~~~~~~~~~~~~c~g~~vi~~~~g~~~~~~~c~c~~~af~gws~d~  547 (1275)
T 6VSJ_A          468 NQHDVVYAQQCFTVRSSFCPCAQPDIVSPCTTQTKPKSAFVNVGDHCEGLGVLEDNCGNADPHKGCICANNSFIGWSHDT  547 (1275)
T ss_dssp             CSSEEEEESCBBCCCSCCCSCC-----------CCCCBCCCCTTCCCCCBEECTTSEECCCSSSSCEECTTCEESEEEEE
T ss_pred             cccceeeccccccCCCCCCCCCCCCcCCCCCCCCCCccceeccccccceeEEeeccCCCCCCCCCccccCCcccccCccc
Confidence            9999876533  233333330  0                  1112211            001111256777888888 


Q sp|P0DTC2|SPIK  509 -----RVVVLSFELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESN-KKFLPFQQFGRDIADTTDAVR  577 (1273)
Q Consensus       509 -----rvvvlsfellha--patvcgp---kkstnlvknkcvnfnfngltgtgvltesn-kkflpfqqfgrdiadttdavr  577 (1273)
                           |++|+|++||++  ++|||+.   +..++++.++||++|..|.||+||+++.+ ..+-.+|.+..+.+.-..++|
T Consensus       548 c~~~~r~~i~~~~~ln~~~s~tvCp~~~~~~~t~I~ln~CVdYNIYGitGtGVItnvt~~~~~~~qgL~yS~sG~L~~FK  627 (1275)
T 6VSJ_A          548 CLVNDRCQIFANILLNGINSGTTCSTDLQLPNTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFR  627 (1275)
T ss_dssp             CEETTEEEEEEEEEEESTTCCSBBCSSSCCCCCCCCCSSCEEEEETTEEEEEEEECCCCCCCCSSCCCEECTTSCEEEEE
T ss_pred             cccCCceeeeeeeeccCCCCCCCCCCcCCCCCceEEeCeEEEEEeCCCeeEEEEEecCCcccccCccEEEeCCCCEEEEE
Confidence                 999999999998  8999998   34689999999999999999999999944 444466778888889999999


Q sp|P0DTC2|SPIK  578 DPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVN  657 (1273)
Q Consensus       578 dpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvn  657 (1273)
                      ++.++++..|+||..+.++++..|.  +...|+++..++|+++....+....+|        .+.|+|-.||+++++|.+
T Consensus       628 n~ttg~~YsV~PC~~v~qQvVV~~~--sivgalls~n~~cs~~~~n~~~~~~~~--------~~~~~t~~gCv~~a~~~t  697 (1275)
T 6VSJ_A          628 DLTTNKTYTIRSCYSGRVSAAFHKD--APEPALLYRNINCSYVFSNNISREENP--------LNYFDSYLGCVVNADNRT  697 (1275)
T ss_dssp             CTTTCCEEEEECCCCCEEECCCCTT--CSSCCEEETTCCHHHHHHTTCCSSCCC--------SCCEECSSSEECSCSEEE
T ss_pred             cCCCCCEEEEEeCceeceeEEEeCC--CceeEEEEeccceeceeeccceeeeCC--------CcceeccccceeccccCC
Confidence            9999999999999999999999876  567789999999999886444333333        344999999999999887


Q sp|P0DTC2|SPIK  658 N--SYECDIPIGAGICASYQTQTNSPRRARSVASQ-SIIA---YT-MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVS  730 (1273)
Q Consensus       658 n--syecdipigagicasyqtqtnsprrarsvasq-siia---yt-mslgaensvaysnnsiaiptnftisvtteilpvs  730 (1273)
                      +  ..+|++|.|.|||+.+..-.-.+   |++..+ .+..   +. +..........+...|.||+||||+|++|-++++
T Consensus       698 ~~~~~~c~~~~g~giC~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~IP~nFtlsv~~EyiQt~  774 (1275)
T 6VSJ_A          698 DEALPNCDLRMGAGLCVDYSKSRRAH---RSVSTGYRLTTFEPYTPMLVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTR  774 (1275)
T ss_dssp             EEEESSCSEEETTTEEEEECTTTCSS---SSSTTSEEEEEECSCCCCBCCCSCSSSCCBCSCCBCCCCEEECCEEECCCC
T ss_pred             CCcCCCCCCccceEEccCcccceecc---cccCCCceeecccCCcccccCCCCCccCcceEEEccCceEEEEEEEEeecC
Confidence            5  68999999999999998833222   221111 1111   11 1111125566777899999999999999999999


Q sp|P0DTC2|SPIK  731 MTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTP-P----I-KDFGGFNFSQ  804 (1273)
Q Consensus       731 mtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktp-p----i-kdfggfnfsq  804 (1273)
                      |.|.+|||.+|+||++.+|.+||.|||+||..+|+||.|.+..+|....++++.+++.++.+ +    | ...|+|||+.
T Consensus       775 ~~kVsIDCa~YVC~g~~rC~~LL~QYgsfC~~I~~aL~~~~~~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~fN~s~  854 (1275)
T 6VSJ_A          775 SPKVTIDCAAFVCGDNTACRQQLVEYGSFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSP  854 (1275)
T ss_dssp             CCEEECCHHHHHSCSSHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCC----------------
T ss_pred             CCCeEEEhhheecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCccchh
Confidence            99999999999999999999999999999999999999999999999999999999998875 2    2 4456799999


Q sp|P0DTC2|SPIK  805 ILPD-----------PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQY  873 (1273)
Q Consensus       805 ilpd-----------pskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqy  873 (1273)
                      +||.           |+++++||+|||||||||+.+|.|+.+.|.+|.+...+|||+|||.|||+.||||++++||+|.|
T Consensus       855 ll~~~~~~~~~~~~~~~~~~~RSaIEDLLF~KV~t~glG~~~~Yk~Ct~g~~i~DL~CAQyyNGImVLPpvvd~~~~amY  934 (1275)
T 6VSJ_A          855 LLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGY  934 (1275)
T ss_dssp             ------CCSSCCSSSTTTTTTTTHHHHHHHHHCSSCTTHHHHHHHHHHTTSSTTSSHHHHHHTTCEEECCSSCHHHHHHH
T ss_pred             hcccccCCcccCCCCCCccCcccHHHHHHcceeeecCCchHHHHHhccCCcchHHhhcccccCcEEEeCCCCCHHHHHHH
Confidence            9986           56668999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  874 TSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVN  953 (1273)
Q Consensus       874 tsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvn  953 (1273)
                      |++|++|....|||+    |..||||+||.||+||+|+||+||.||||+|||.||.||+.||+.++++++||.|+|||||
T Consensus       935 TasL~g~m~~gg~Ta----aaaIPFa~~vq~RlN~v~lt~~VL~~NQk~iA~sFN~A~~~iq~~f~~~~~Al~kiQ~VVN 1010 (1275)
T 6VSJ_A          935 TTGATAAAMFPPWSA----AAGVPFSLSVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVN 1010 (1275)
T ss_dssp             HHHHHHTTSCSSSCS----STTCCHHHHHHHHGGGTSCHHHHTTHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchh----cccCchHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997    5568999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  954 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV 1033 (1273)
Q Consensus       954 qnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv 1033 (1273)
                      ++++||++|++||+.|||||||.++||++|||++||++||||||+|||.+|++||+|||+|++|+|||+.||..||.|||
T Consensus      1011 ~q~~aL~~L~~qL~~nFgAISssI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtQ~L~~~~evr~sr~LA~qKINECV 1090 (1275)
T 6VSJ_A         1011 ANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECV 1090 (1275)
T ss_dssp             HHHHHHHHHHHGGGSCCSSSCSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1034 LGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEP 1112 (1273)
Q Consensus      1034 lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvfvsngthwfvtqrnfyep 1112 (1273)
                      ..||+|.+|||.|.|++|+||.||+|++|+|++|+|.+.++.+++|.+|+++ ++..|+.|+|+.+...|++|.|++|||
T Consensus      1091 KSQS~R~gFCGnGtHi~Si~q~APnGi~FlH~~y~Pt~~~~V~a~~GlC~~~~~~~~p~~g~fv~~n~~~~iT~r~~Y~P 1170 (1275)
T 6VSJ_A         1091 KSQTTRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFVQDDGEWKFTGSSYYYP 1170 (1275)
T ss_dssp             CSCCSSSSCSSSSCCCCCCEECCTTSCEEECCEEECCSCCCCBCCTTCCSCCCSSSCCCCSCCCBCSSSSBCCCSSBCCC
T ss_pred             hcCCCcccccCCCeEEEEeeeccCCeEEEEEEEecccceEEEEEEeeeEecCCceEEecCeEEEecCCEEEEeccCcccC
Confidence            9999999999999999999999999999999999999999999999999994 899999999999988999999999999


Q sp|P0DTC2|SPIK 1113 QIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVN----IQKEIDRLN 1187 (1273)
Q Consensus      1113 qiittdntfvsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlg-disginasvvn----iqkeidrln 1187 (1273)
                      ..||.+|...-..|||...-+|+++..|..|++..|+|||+|+|||+++...|++ |++.+|+++++    ++.++++|+
T Consensus      1171 r~it~~d~v~~~sC~v~y~n~~~~~l~~~~p~~~df~~el~~~~~n~~~~~p~~~~~~~~~N~t~L~Ei~~l~~~~~~l~ 1250 (1275)
T 6VSJ_A         1171 EPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTLIKRMKQIEDKIEEIE 1250 (1275)
T ss_dssp             CSSCCC--------------------------------------------------------------------------
T ss_pred             CCCCccceEEeeccccEEEEcccccCCCCCCCCCChHHHHHHHHhcCCCCCCCcCCCHHHccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999666664 38899999986    666666666


Q sp|P0DTC2|SPIK 1188 EVAKNLNESLIDLQELG 1204 (1273)
Q Consensus      1188 evaknlneslidlqelg 1204 (1273)
                      ++.++||.++.++..+.
T Consensus      1251 ~~i~~in~~~~~~~~~~ 1267 (1275)
T 6VSJ_A         1251 SKQKKIENEIARIKKIK 1267 (1275)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            66777777766665543


No 7
>6VSJ_C Spike glycoprotein, Carcinoembryonic antigen-related cell; MHV spike, CEACAM1a, Complex, Glycoprotein; HET: NAG; 3.94A {Murine coronavirus (strain A59)}
Probab=100.00  E-value=2.1e-195  Score=1649.54  Aligned_cols=1145  Identities=30%  Similarity=0.512  Sum_probs=889.4  Template_Neff=4.000

Q sp|P0DTC2|SPIK    9 PLVSSQCVNLTTRTQLP---PAYT-----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAI--HVSGTNGTKR   78 (1273)
Q Consensus         9 plvssqcvnlttrtqlp---payt-----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhai--hvsgtngtkr   78 (1273)
                      ++....|...-...-++   |.++     -+-.+|+||||..++|+..+-.|+||.+.-++.+-+-.-  |...  .--.
T Consensus        22 ~i~~~~C~~~~~~~~~~~~~~~~s~~~idvs~~~G~yYPd~rvysN~TlL~qGLFP~~gs~~~~Y~~sgt~~~s--~~~~   99 (1275)
T 6VSJ_C           22 YIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALRGTNSVS--LSWF   99 (1275)
T ss_dssp             CCSSBCCCCCSEECCCCCCCCCCCSCBCCCTTSTTCBCCTTCBCCSCCCEEEEEEECTTCBCCBCCCEESSEEC--GGGS
T ss_pred             cccCcceeEeecCCCCCCCCCCCcceeeeeecceeEEEeCCeEEeceeeeeccccCCCCCceeeEEeeccCCCC--cccc
Confidence            34555677653333333   3444     345689999999999999999999999998887654222  2222  1346


Q sp|P0DTC2|SPIK   79 FDNPVLPFNDGVYFASTEKSNI--------IRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNK  150 (1273)
Q Consensus        79 fdnpvlpfndgvyfasteksni--------irgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnk  150 (1273)
                      +++++.||+||+++...+.+|-        -..++||+|.+..+++++|+++-+...|.+|.|..|..|...+++.-+|.
T Consensus       100 y~~~~~~F~dGIfVkV~~~kn~t~~~~~~~ypa~~fGSTF~Nts~tvVI~P~~~~r~itvCq~~vC~~p~~~~~p~~g~~  179 (1275)
T 6VSJ_C          100 QPPYLNQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPYNGVIMASVCQYTICQLPYTDCKPNTNGN  179 (1275)
T ss_dssp             STTTSCCCSSCEEEEEECCGGGSCTTCCCSSCCEEEESSCSTTSCEEEECEETTEECCEEECCCBBSSCCEESSCCCSSC
T ss_pred             cCCcccccCCcEEEEeeeeccCCCCcchhccceeEEecccCCCceEEEEeCCCceeEeEEEEEEEcCCCeeEEccCCCCC
Confidence            7788999999999998887765        35678999999999999999999999999999999999999888744332


Q sp|P0DTC2|SPIK  151 SWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINL---VRDLPQGFSALEPLV  227 (1273)
Q Consensus       151 swmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinl---vrdlpqgfsaleplv  227 (1273)
                      +..+  ++. ....+|+|.|. +.|-+|...  ..|-    |.|+..||.|-+|..+...+.   ..-+| |...+.+. 
T Consensus       180 ~~~~--~~~-~d~~nc~f~~~-~nfT~d~~~--~~~~----~~F~~~dG~fy~Yyad~~~~~~f~f~~~~-~~~~~~yy-  247 (1275)
T 6VSJ_C          180 KLIG--FWH-TDVKPPICVLK-RNFTLNVNA--DAFY----FHFYQHGGTFYAYYADKPSATTFLFSVYI-GDILTQYY-  247 (1275)
T ss_dssp             TTCC--SSB-CCCSCCCEEEE-CCEECCTTC--SEEE----EEBCEETTEECCEECSSSSCBEECCCCCC-SSCCCEEE-
T ss_pred             ceee--ece-ecCCCCEEEEe-eeeccCccc--ceee----EEEEEcCCeEEEEEECCCcCcceeecccc-cceeceeE-
Confidence            3322  233 67889999764 455444322  1221    999999999988876644332   11222 33333333 


Q sp|P0DTC2|SPIK  228 DLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT  307 (1273)
Q Consensus       228 dlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksft  307 (1273)
                                     .+-|+..++   .+.+  ..++|||++|.+|+|||+|++||.||+||||+-|+++|-||..+||.
T Consensus       248 ---------------v~~~~~~~~---~~~~--~~~~~~v~~L~~~~~ll~fd~~G~i~~avDC~~~~~~el~C~~~sf~  307 (1275)
T 6VSJ_C          248 ---------------VLPFICNPT---AGST--FAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSML  307 (1275)
T ss_dssp             ---------------ECCEECCCS---SCSC--CCCEEEEEEEEEEEEECCBCSSSCBCCCBCTTSCHHHHHHHHHTSSS
T ss_pred             ---------------EeeeeecCC---CCCC--cccEEEEEeccceeEEEEecCCCeEeEEEecccCccceeeeEecccc
Confidence                           233444333   2223  67899999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  308 VEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKL  387 (1273)
Q Consensus       308 vekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl  387 (1273)
                      +++|+|++|+||+||....+|.++.+..|+|.++++|.++.++|.|.|+.++||..|+++|++..++++|+||||+|.||
T Consensus       308 ~~~GVY~~s~y~a~p~~~v~~~~~~~~~C~~~~~~~~~~~P~p~~w~R~~~~nCnfn~s~Ll~~~~~~~f~C~~ispskl  387 (1275)
T 6VSJ_C          308 PSTGVYELSGYTVQPVGVVYRRVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASKV  387 (1275)
T ss_dssp             CCSSCEECCCCCCCCCCCCCCCCCCCCBCCTHHHHTCSEEECTTSCEEEEECSCBCCHHHHHHHSEEEECCBSSCCTTTS
T ss_pred             CCCceeecCCeEEEeeeEEEEecCCCCCCCHHHHHhcCCCCCchhcEEeEEecCCCCHHHHHhheeeccceecCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  388 NDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSK----VGGNYNYLYRLFRKSNLKP  463 (1273)
Q Consensus       388 ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldsk----vggnynylyrlfrksnlkp  463 (1273)
                      .++||..|++|.|.|..+..++++||++|-|++||||+|+||+||+++|+-...+..    --++||+-|+.-++..++|
T Consensus       388 ~~~CfssvtiD~F~ip~~~~~~l~~g~~g~i~~yNYkl~~~~~~C~l~~~~~~~~~~~t~~np~~~~~~~~~~~~~~f~~  467 (1275)
T 6VSJ_C          388 YGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTINNHNPSSWNRRYGFNDAGVFGK  467 (1275)
T ss_dssp             TTCCBSEEEEEEECCCSTTGGGGSTTCCSSHHHHTCCCCSSSCEEECEEEECTTTCEEECCCCCHHHHHHSCCTTTTTTT
T ss_pred             cccccCeeEEEEEeccchhceeecCCCCcHhHhccccCCCCCCceEEEEEcCcccccccCCCCccchhcccccccccccC
Confidence            999999999999999999999999999999999999999999999999996543322    2357888888888899999


Q sp|P0DTC2|SPIK  464 FERDISTEIY--QAGSTPCNG--V------------------EGFNCYF------------PLQSYGFQPTNGVGYQPY-  508 (1273)
Q Consensus       464 ferdisteiy--qagstpcng--v------------------egfncyf------------plqsygfqptngvgyqpy-  508 (1273)
                      +++|..-..+  ..+.+-|+.  .                  .|..|+-            |..+---+|+..+||+++ 
T Consensus       468 ~~~dvvy~~~~~~~~~~~cpC~~~~~~~~ct~~~~~~~~~~~~~~~c~g~~vi~~~~g~~~~~~~c~c~~~af~gws~d~  547 (1275)
T 6VSJ_C          468 NQHDVVYAQQCFTVRSSFCPCAQPDIVSPCTTQTKPKSAFVNVGDHCEGLGVLEDNCGNADPHKGCICANNSFIGWSHDT  547 (1275)
T ss_dssp             CSSEEEEESCBBCCCSCCCSCC-----------CCCCBCCCCTTCCCCCBEECTTSEECCCSSSSCEECTTCEESEEEEE
T ss_pred             cccceeeccccccCCCCCCCCCCCCcCCCCCCCCCCccceeccccccceeEEeeccCCCCCCCCCccccCCcccccCccc
Confidence            9999876533  233333330  0                  1112211            001111256777888888 


Q sp|P0DTC2|SPIK  509 -----RVVVLSFELLHA--PATVCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESN-KKFLPFQQFGRDIADTTDAVR  577 (1273)
Q Consensus       509 -----rvvvlsfellha--patvcgp---kkstnlvknkcvnfnfngltgtgvltesn-kkflpfqqfgrdiadttdavr  577 (1273)
                           |++|+|++||++  ++|||+.   +..++++.++||++|..|.||+||+++.+ ..+-.+|.+..+.+.-..++|
T Consensus       548 c~~~~r~~i~~~~~ln~~~s~tvCp~~~~~~~t~I~ln~CVdYNIYGitGtGVItnvt~~~~~~~qgL~yS~sG~L~~FK  627 (1275)
T 6VSJ_C          548 CLVNDRCQIFANILLNGINSGTTCSTDLQLPNTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFR  627 (1275)
T ss_dssp             CEETTEEEEEEEEEEESTTCCSBBCSSSCCCCCCCCCSSCEEEEETTEEEEEEEECCCCCCCCSSCCCEECTTSCEEEEE
T ss_pred             cccCCceeeeeeeeccCCCCCCCCCCcCCCCCceEEeCeEEEEEeCCCeeEEEEEecCCcccccCccEEEeCCCCEEEEE
Confidence                 999999999998  8999998   34689999999999999999999999944 444466778888889999999


Q sp|P0DTC2|SPIK  578 DPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVN  657 (1273)
Q Consensus       578 dpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvn  657 (1273)
                      ++.++++..|+||..+.++++..|.  +...|+++..++|+++....+....+|        .+.|+|-.||+++++|.+
T Consensus       628 n~ttg~~YsV~PC~~v~qQvVV~~~--sivgalls~n~~cs~~~~n~~~~~~~~--------~~~~~t~~gCv~~a~~~t  697 (1275)
T 6VSJ_C          628 DLTTNKTYTIRSCYSGRVSAAFHKD--APEPALLYRNINCSYVFSNNISREENP--------LNYFDSYLGCVVNADNRT  697 (1275)
T ss_dssp             CTTTCCEEEEECCCCCEEECCCCTT--CSSCCEEETTCCHHHHHHTTCCSSCCC--------SCCEECSSSEECSCSEEE
T ss_pred             cCCCCCEEEEEeCceeceeEEEeCC--CceeEEEEeccceeceeeccceeeeCC--------CcceeccccceeccccCC
Confidence            9999999999999999999999876  567789999999999886444333333        344999999999999887


Q sp|P0DTC2|SPIK  658 N--SYECDIPIGAGICASYQTQTNSPRRARSVASQ-SIIA---YT-MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVS  730 (1273)
Q Consensus       658 n--syecdipigagicasyqtqtnsprrarsvasq-siia---yt-mslgaensvaysnnsiaiptnftisvtteilpvs  730 (1273)
                      +  ..+|++|.|.|||+.+..-.-.+   |++..+ .+..   +. +..........+...|.||+||||+|++|-++++
T Consensus       698 ~~~~~~c~~~~g~giC~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~IP~nFtlsv~~EyiQt~  774 (1275)
T 6VSJ_C          698 DEALPNCDLRMGAGLCVDYSKSRRAH---RSVSTGYRLTTFEPYTPMLVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTR  774 (1275)
T ss_dssp             EEEESSCSEEETTTEEEEECTTTCSS---SSSTTSEEEEEECSCCCCBCCCSCSSSCCBCSCCBCCCCEEECCEEECCCC
T ss_pred             CCcCCCCCCccceEEccCcccceecc---cccCCCceeecccCCcccccCCCCCccCcceEEEccCceEEEEEEEEeecC
Confidence            5  68999999999999998833222   221111 1111   11 1111125566777899999999999999999999


Q sp|P0DTC2|SPIK  731 MTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTP-P----I-KDFGGFNFSQ  804 (1273)
Q Consensus       731 mtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktp-p----i-kdfggfnfsq  804 (1273)
                      |.|.+|||.+|+||++.+|.+||.|||+||..+|+||.|.+..+|....++++.+++.++.+ +    | ...|+|||+.
T Consensus       775 ~~kVsIDCa~YVC~g~~rC~~LL~QYgsfC~~I~~aL~~~~~~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~fN~s~  854 (1275)
T 6VSJ_C          775 SPKVTIDCAAFVCGDNTACRQQLVEYGSFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDINFSP  854 (1275)
T ss_dssp             CCEEECCHHHHHSCSSHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCC----------------
T ss_pred             CCCeEEEhhheecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCccchh
Confidence            99999999999999999999999999999999999999999999999999999999998875 2    2 4456799999


Q sp|P0DTC2|SPIK  805 ILPD-----------PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQY  873 (1273)
Q Consensus       805 ilpd-----------pskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqy  873 (1273)
                      +||.           |+++++||+|||||||||+.+|.|+.+.|.+|.+...+|||+|||.|||+.||||++++||+|.|
T Consensus       855 ll~~~~~~~~~~~~~~~~~~~RSaIEDLLF~KV~t~glG~~~~Yk~Ct~g~~i~DL~CAQyyNGImVLPpvvd~~~~amY  934 (1275)
T 6VSJ_C          855 LLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGY  934 (1275)
T ss_dssp             ------CCSSCCSSSTTTTTTTTHHHHHHHHHCSSCTTHHHHHHHHHHTTSSTTSSHHHHHHTTCEEECCSSCHHHHHHH
T ss_pred             hcccccCCcccCCCCCCccCcccHHHHHHcceeeecCCchHHHHHhccCCcchHHhhcccccCcEEEeCCCCCHHHHHHH
Confidence            9986           56668999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  874 TSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVN  953 (1273)
Q Consensus       874 tsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvn  953 (1273)
                      |++|++|....|||+    |..||||+||.||+||+|+||+||.||||+|||.||.||+.||+.++++++||.|+|||||
T Consensus       935 TasL~g~m~~gg~Ta----aaaIPFa~~vq~RlN~v~lt~~VL~~NQk~iA~sFN~A~~~iq~~f~~~~~Al~kiQ~VVN 1010 (1275)
T 6VSJ_C          935 TTGATAAAMFPPWSA----AAGVPFSLSVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVN 1010 (1275)
T ss_dssp             HHHHHHTTSCSSSCS----STTCCHHHHHHHHGGGTSCHHHHTTHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchh----cccCchHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997    5568999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  954 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECV 1033 (1273)
Q Consensus       954 qnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv 1033 (1273)
                      ++++||++|++||+.|||||||.++||++|||++||++||||||+|||.+|++||+|||+|++|+|||+.||..||.|||
T Consensus      1011 ~q~~aL~~L~~qL~~nFgAISssI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtQ~L~~~~evr~sr~LA~qKINECV 1090 (1275)
T 6VSJ_C         1011 ANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECV 1090 (1275)
T ss_dssp             HHHHHHHHHHHGGGSCCSSSCSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1034 LGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEP 1112 (1273)
Q Consensus      1034 lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvfvsngthwfvtqrnfyep 1112 (1273)
                      ..||+|.+|||.|.|++|+||.||+|++|+|++|+|.+.++.+++|.+|+++ ++..|+.|+|+.+...|++|.|++|||
T Consensus      1091 KSQS~R~gFCGnGtHi~Si~q~APnGi~FlH~~y~Pt~~~~V~a~~GlC~~~~~~~~p~~g~fv~~n~~~~iT~r~~Y~P 1170 (1275)
T 6VSJ_C         1091 KSQTTRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFVQDDGEWKFTGSSYYYP 1170 (1275)
T ss_dssp             CSCCSSSSCSSSSCCCCCCEECCTTSCEEECCEEECCSCCCCBCCTTCCSCCCSSSCCCCSCCCBCSSSSBCCCSSBCCC
T ss_pred             hcCCCcccccCCCeEEEEeeeccCCeEEEEEEEecccceEEEEEEeeeEecCCceEEecCeEEEecCCEEEEeccCcccC
Confidence            9999999999999999999999999999999999999999999999999994 899999999999988999999999999


Q sp|P0DTC2|SPIK 1113 QIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG-DISGINASVVN----IQKEIDRLN 1187 (1273)
Q Consensus      1113 qiittdntfvsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlg-disginasvvn----iqkeidrln 1187 (1273)
                      ..||.+|...-..|||...-+|+++..|..|++..|+|||+|+|||+++...|++ |++.+|+++++    ++.++++|+
T Consensus      1171 r~it~~d~v~~~sC~v~y~n~~~~~l~~~~p~~~df~~el~~~~~n~~~~~p~~~~~~~~~N~t~L~Ei~~l~~~~~~l~ 1250 (1275)
T 6VSJ_C         1171 EPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWFKNQTSIAPDLSLDFEKLNVTLIKRMKQIEDKIEEIE 1250 (1275)
T ss_dssp             CSSCCC--------------------------------------------------------------------------
T ss_pred             CCCCccceEEeeccccEEEEcccccCCCCCCCCCChHHHHHHHHhcCCCCCCCcCCCHHHccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999666664 38899999986    666666666


Q sp|P0DTC2|SPIK 1188 EVAKNLNESLIDLQELG 1204 (1273)
Q Consensus      1188 evaknlneslidlqelg 1204 (1273)
                      ++.++||.++.++..+.
T Consensus      1251 ~~i~~in~~~~~~~~~~ 1267 (1275)
T 6VSJ_C         1251 SKQKKIENEIARIKKIK 1267 (1275)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            66777777766665543


No 8
>6OHW_A Spike surface glycoprotein; Coronavirus spike glycoprotein, sialic acid; HET: MAN, NAG, BMA; 2.9A {Human coronavirus OC43}
Probab=100.00  E-value=7.3e-190  Score=1602.12  Aligned_cols=1144  Identities=29%  Similarity=0.505  Sum_probs=895.1  Template_Neff=3.700

Q sp|P0DTC2|SPIK    2 FVFLVLLP-----LVSSQCVNLTTRTQLP---PAYT-----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAI   68 (1273)
Q Consensus         2 fvflvllp-----lvssqcvnlttrtqlp---payt-----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhai   68 (1273)
                      |+|+.|+|     +....|.. ....-+.   |.++     -+-.+|+||||..++++..+-.|++|.+.-++.+-.-  
T Consensus        13 ~~~~~~~~~~~~~i~~~~C~~-~~~~~~~~~~~~~~~~~id~s~~~G~yYp~~rvysN~tll~~glfp~~gs~~~~y~--   89 (1322)
T 6OHW_A           13 YLLGMLVASVLAVIGDLKCTS-DNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMA--   89 (1322)
T ss_dssp             ------------CCSSBCCCC-TTEECCCCCSCCEEEEECCCTTSTTCBCCTEEECCSEEEEEEEEEECTTCEEEECC--
T ss_pred             HHHHHHHHHHHHHhcCccccc-cCCCCCCCCCCCCCcceeecccCceeEEecCeEEeeeeeEecceecCCCCceEEee--
Confidence            56666655     33445765 2222222   3333     3456899999999999999999999999877665321  


Q sp|P0DTC2|SPIK   69 HVSGTNG---TKRFDNPVLPFNDGVYFASTEKSNIIRGW---------IFGTTLDSKTQSLLIVNNATN-----------  125 (1273)
Q Consensus        69 hvsgtng---tkrfdnpvlpfndgvyfasteksniirgw---------ifgttldsktqsllivnnatn-----------  125 (1273)
                       .+|++-   --.++++..||+||++....+..|. +||         +||+|.+...++++|.++-.+           
T Consensus        90 -~~~t~~~s~~~~y~~~~~~F~dGifvkv~~~~~~-t~~~~~~~yp~~~fGstf~N~s~tvVI~P~~~~~~~~~~~~~~~  167 (1322)
T 6OHW_A           90 -LKGSVLLSRLWFKPPFLSDFINGIFAKVKNTKVI-KDRVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGDNKLQG  167 (1322)
T ss_dssp             -CEESSCEEGGGGSTTTEEECSSEEEEEEECEEEE-ETTEEEEECCCEEEESSCSTTSCEEEEEEEEEC-------CCEE
T ss_pred             -eecccccccccccCCccccccCcEEEEEEeeccc-CCCceeeccCceEEeccccCCeeEEEEccCCCCcCccccccccc
Confidence             223322   2456777889999997766655544 444         699999999999999987664           


Q sp|P0DTC2|SPIK  126 -VVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIY  204 (1273)
Q Consensus       126 -vvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiy  204 (1273)
                       ..|.+|.|..|..|...+++.-+| +.  -+++. ....+|+|.|. +.|-.|...  ..|-    |.|++.||.|-+|
T Consensus       168 ~~~it~C~~~vC~~p~~~~~~~~gn-~~--~~~~~-~d~~~~~~~~~-~nfT~d~~~--~~~~----f~F~q~~G~fy~Y  236 (1322)
T 6OHW_A          168 LLEVSVCQYNMCEYPQTICHPNLGN-HR--KELWH-LDTGVVSCLYK-RNFTYDVNA--DYLY----FHFYQEGGTFYAY  236 (1322)
T ss_dssp             EEEEEEECCCEEEEEEEECCTTTCC-SS--CCEEE-CCSSCCCEEEE-EEEEECTTC--SEEE----EEEEEETTEEEEE
T ss_pred             ceEEeeeeeEecCCCeeEEecCCCC-Cc--eeeeE-eecCCceEEEe-eeecccccc--ceee----EEEEEeCCeEEEE
Confidence             347899999999999988875444 22  23444 66788998765 455444322  1111    9999999999887


Q sp|P0DTC2|SPIK  205 SKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGT  284 (1273)
Q Consensus       205 skhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengt  284 (1273)
                      ..+...+.      .|     +...+.|...+++-   .+-|+..++         ..++|||++|.+|+|||+|++||.
T Consensus       237 y~d~~~~~------~f-----~f~~~~~~~~~~yy---v~p~~~~~~---------~~~~~~v~~L~~~~~Ll~fd~~G~  293 (1322)
T 6OHW_A          237 FTDTGVVT------KF-----LFNVYLGMALSHYY---VMPLTCNSK---------LTLEYWVTPLTSRQYLLAFNQDGI  293 (1322)
T ss_dssp             EESSSSSB------EE-----EEEEECSSCCCEEE---ECCEECSSC---------CCCCEEEEEEEEEEEEEEECTTSC
T ss_pred             EecCCCCc------ce-----eccccceeccceeE---eceeecCCc---------cceeEEEEeceeeeEEEEecCCCe
Confidence            44432221      00     01111122222222   222333332         668999999999999999999999


Q sp|P0DTC2|SPIK  285 ITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVAD  364 (1273)
Q Consensus       285 itdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvad  364 (1273)
                      ||+||||+-|+++|-||..+||.+++|+|++|+||+||...++|.+.....|+|.++++|.++.++|.|.|+.++||..|
T Consensus       294 It~AvDC~~~~~sEl~C~t~sf~~~tGVY~lS~y~aqp~~~V~~~~~~~~~C~~~~~~~~~~~P~p~~w~R~~f~nCnfn  373 (1322)
T 6OHW_A          294 IFNAVDCMSDFMSEIKCKTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPNCNIEAWLNDKSVPSPLNWERKTFSNCNFN  373 (1322)
T ss_dssp             EEEEEETTSSHHHHHHHHTTCSSCCSEEEEEEEEECCCSEEEEECCSSCCBCCHHHHHTCSEEECSTTCEEEEEESCBBC
T ss_pred             EeEEEecccCcchhheeeecccCCCCceeecCCeEEEeeeEEEEeCCCCCCCCHHHHhcCCCCCCccceEEeEEecCCCC
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q sp|P0DTC2|SPIK  365 YSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSK  444 (1273)
Q Consensus       365 ysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldsk  444 (1273)
                      +++|++...+++|+||||+|.||.+.||..|++|.|.|..+..++++||.+|.|++||||+|++|+||+++|+-.+.+..
T Consensus       374 ~s~ll~~~~~~~f~C~~ispskl~~~C~ssvtiD~F~ip~~~~~~l~~g~~g~~~~~NYkl~~~~~~C~l~y~~~~~nvn  453 (1322)
T 6OHW_A          374 MSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVS  453 (1322)
T ss_dssp             HHHHHHHCEEEEEEEESSCGGGGGGCEEEEEEEEEEECCTTCGGGGSTTCCCHCCCCCCCCCSSSCEEEEEEEEEGGGCE
T ss_pred             HHHHhhhceeceeeecCCCHHHHcccccceeEEEEEeccCCcceeecCCCCcHHHhcCccCCCCCCceEEEEEccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999995554333


Q sp|P0DTC2|SPIK  445 V----GGNYNYLYRLFRKSNLKPFERDI---STEIYQ-----AGSTPCN----------G--------------------  482 (1273)
Q Consensus       445 v----ggnynylyrlfrksnlkpferdi---steiyq-----agstpcn----------g--------------------  482 (1273)
                      +    -++||.-|+.-..+.++|.++..   ...+|.     .+.+-|+          +                    
T Consensus       454 ~t~~Nps~wn~ry~f~~~~~~~~~~~~~~~~hdvvYs~~cf~~~~~yCPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  533 (1322)
T 6OHW_A          454 VSRFNPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAPKNFCPCKLNGSCVGSGPGKNNGIGTCPAGTNYLTCD  533 (1322)
T ss_dssp             EECCCCCHHHHHTTCCHHHHSCBTTTSSBCTTEEEEESCCEECCTTCCCCBCC-----------CCBBCCCTTCCCBCC-
T ss_pred             cccCCccchhhccCcccccccCCCCCCcCCCcceeeeeeeecCCCCcCCCcCCCcccCCCCCCCCCCCcCCCCccccccc
Confidence            2    34677777766667777765411   112222     2222121          0                    


Q sp|P0DTC2|SPIK  483 ----VEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL-----------------------------------LHAPAT  523 (1273)
Q Consensus       483 ----vegfncyfplqsygfqptngvgyqpyrvvvlsfel-----------------------------------lhapat  523 (1273)
                          ..+..|.-+...+--....|+|+++++++|++++.                                   ...+.|
T Consensus       534 ~~~~~~~~~~~~~~~~~q~~~~~gvg~~c~gl~Vi~~k~g~~~C~C~~~af~g~~~~~~~~~~~~~i~~~~~~~~~~s~t  613 (1322)
T 6OHW_A          534 NLCTPDPITFTGTYKCPQTKSLVGIGEHCSGLAVKSDYCGGNSCTCRPQAFLGWSADSCLQGDKCNIFANFILHDVNSGL  613 (1322)
T ss_dssp             ---TTCSSSCCCSSCCSSEECCCCTTCCCCCCEECGGGEEBTTTEECGGGEESEEEEECEETTEEEEEEEEEEEEETSSS
T ss_pred             cCCCCCCCccccccCCCCceeeeecccccceEEEEecccCCCCccCCCccccCCCcccccCCCccccccceeecCCCCCC
Confidence                01122211111111123569999999999999988                                   667889


Q sp|P0DTC2|SPIK  524 VCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESN-KKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVIT  599 (1273)
Q Consensus       524 vcgp---kkstnlvknkcvnfnfngltgtgvltesn-kkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvit  599 (1273)
                      ||++   +.+++++.++||++|..|.||+||+++++ ..++.++.+..|-+.-..+++++.++++..|+||..|.++++.
T Consensus       614 vC~~d~~~~~snI~Ln~CVdYNIYGitGqGVItn~n~~~~~~~~GL~ydssgdL~gfKn~ttg~~YsV~PC~~g~VVGi~  693 (1322)
T 6OHW_A          614 TCSTDLQKANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYITNRTFMIRSCYSGRVSAAF  693 (1322)
T ss_dssp             EEBCSSCCCCCCCCBSSEEEEEETTEEEEEEEEEECCCCCCTTEEEEECTTSCEEEEECTTTCCEEEEECCCEEEEEEEE
T ss_pred             cCCCcccccCceEEeCeeeeEEeCCccceEEEEecCCCceeccCcEEEcCCCCEEEEEcCCCCcEEEEEeCccCcEEEEE
Confidence            9998   56799999999999999999999999964 5566778888888888889999999999999999999999998


Q sp|P0DTC2|SPIK  600 PGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVN--NSYECDIPIGAGICASYQTQ  677 (1273)
Q Consensus       600 pgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvn--nsyecdipigagicasyqtq  677 (1273)
                      ...  ++..+.+|.++.|.+|....|..+++|        .+-|+|-.||++++.+..  ...+|++|.|.|+|+.|.+ 
T Consensus       694 tS~--n~t~a~lF~n~~C~~v~~~~~~~~~~~--------~~~f~t~~Gcv~~a~~~t~~~v~~c~~~~g~~~C~~~~~-  762 (1322)
T 6OHW_A          694 HAN--SSEPALLFRNIKCNYVFNNSLTRQLQP--------INYFDSYLGCVVNAYNSTAISVQTCDLTVGSGYCVDYSK-  762 (1322)
T ss_dssp             CTT--CSSCEEEEETCCHHHHHHTTTTTTCCC--------SCEEECSSEEEESSEEEEEEEESCCSEEEETTEEEEEC--
T ss_pred             eCC--CCCccceeccceeceeeecccceeecc--------ccceeccccceecceecCCceeccccccccCceeeecCC-
Confidence            765  445789999999999998766655555        233999999999999986  4889999999999999988 


Q sp|P0DTC2|SPIK  678 TNSPRRARSVAS--QSIIAYTMSL-----GAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECS  750 (1273)
Q Consensus       678 tnsprrarsvas--qsiiaytmsl-----gaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecs  750 (1273)
                         |+++++...  ..+..| +.+     ........+...|.||+||||+|++|-++++|.|.+|||.+|+||++.+|.
T Consensus       763 ---~~gs~~~~~~~~~l~~~-~p~~~~~v~~~~~~~~~~~~IsIP~NFTlsvt~EyIQt~~~kVsIDCa~YVC~~~~~C~  838 (1322)
T 6OHW_A          763 ---NGGSGGAITTGYRFTNF-EPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACK  838 (1322)
T ss_dssp             -----------CCSEEEEEE-CCCCCEEECCCSSCBTTBEEEEEEEEEEEEEEEEEEECCCCEEEECHHHHHSCSCHHHH
T ss_pred             ---CCCCCceeccCceeeec-cceeecccccCCCCCcceEEEEecCceeeEEEEEEeeecCCCeEEehhheecCCCHHHH
Confidence               444433222  222233 222     111223455568999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  751 NLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKT----PPIKDF--GGFNFSQILPDPS----KPSKRSFIED  820 (1273)
Q Consensus       751 nlllqygsfctqlnraltgiaveqdkntqevfaqvkqiykt----ppikdf--ggfnfsqilpdps----kpskrsfied  820 (1273)
                      +||.|||+||..+|+||.+++..+|....+++..+++-++.    +.+..|  |+||||.+||.+.    .+++||+|||
T Consensus       839 ~LL~QYgs~C~~I~~aL~~v~~~~d~~~~~~~~~~~~~~~~s~~l~~~~~~~~g~fN~s~ll~~~~s~~~~~~~RSaIED  918 (1322)
T 6OHW_A          839 SQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECSKASSRSAIED  918 (1322)
T ss_dssp             HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEGGGGTCCCCEETTEECTTTCCCCCC----CCSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhcCccccccccccccCCCCCccccccccCCCCCCCcCccccHHHH
Confidence            99999999999999999999999999999999999998876    444445  6899999999875    3578999999


Q sp|P0DTC2|SPIK  821 LLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900 (1273)
Q Consensus       821 llfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam  900 (1273)
                      |||+||..+|.|+.+.|.+|.+...+|||+|||.|||+.||||++++||++.||++|++|....|||+    |..||||+
T Consensus       919 LLFnKV~tsglG~~~~Yk~Ct~g~~i~DL~CAQyyNGImVLPpVvd~~~~amYTaSL~g~m~~gg~Ta----aaaIPFa~  994 (1322)
T 6OHW_A          919 LLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSENQFSGYTLAATSASLFPPWTA----AAGVPFYL  994 (1322)
T ss_dssp             HHHHTCSCSHHHHHHHHTTTTTTSCTTCHHHHHHHTTEEEECCSSCHHHHHHHHHHHHHTTTSSSCGG----GTTCCHHH
T ss_pred             HHcceeeeCCcchHHHhHhccCCccHHHhhccceeCcEEEeCCCCCHHHHHHHHHHHHHHhhccCchh----cccCcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997    55689999


Q sp|P0DTC2|SPIK  901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980 (1273)
Q Consensus       901 qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndi  980 (1273)
                      ||.||+||+|+||+||.||||+|||.||.||+.||+.++.|++||.|+|||||++++||++|++||+.|||||||.++||
T Consensus       995 ~vq~RlN~v~lt~~VL~~NQk~iA~sFN~Ai~~iq~~f~tt~~AL~KiQ~VVN~q~~aL~~L~~qL~~nFgAISssI~DI 1074 (1322)
T 6OHW_A          995 NVQYRINGLGVTMDVLSQNQKLIANAFNNALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEI 1074 (1322)
T ss_dssp             HHHHHHHTTTCCHHHHTTCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHGGGGCCTTSSCSCHHHH
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  981 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGV 1060 (1273)
Q Consensus       981 lsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgv 1060 (1273)
                      ++|||++||++||||||+|||.+|++||+|||+|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+||.||+|+
T Consensus      1075 y~RLD~LEAdaQVDRLItGRL~aLNafVtQ~L~~~~eVr~sr~LA~qKINECVKSQS~R~gFCGnG~Hi~Si~q~AP~Gi 1154 (1322)
T 6OHW_A         1075 LSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGL 1154 (1322)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSCCCSCSSCSTTSSEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCeeEEEeeeccCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1061 VFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYD 1139 (1273)
Q Consensus      1061 vflhvtyvpaqeknfttapaichdg-kahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd 1139 (1273)
                      +|+|.+|+|.+.++.+++|.+|++| ++..|++|+|+.+...|++|.|++|+|..||.+|...-..|||...-+|+++..
T Consensus      1155 ~F~H~~~~Pt~~~~V~a~~GlC~~~~~~~~~~~g~f~~~n~~~~~T~r~~y~Pr~~t~~d~v~~~sC~v~y~n~~~~~l~ 1234 (1322)
T 6OHW_A         1155 YFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLN 1234 (1322)
T ss_dssp             EEEEEEEEEEEEEEEEEESCEECTTSCEEEESSEEEEEETTEEEEEETTEEEEEECCGGGEEEESSCCTTSEECTTCCCC
T ss_pred             EEEEeEecccceEEEEEeeeEEecCCeeEEecceEEEeeCCEEEEeccCcccCCCCCccceEEeccceeEEEEcCcccCC
Confidence            9999999999999999999999995 899999999999988999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1140 PLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNI-QKEIDRLNEVAKNLNESLIDLQELG 1204 (1273)
Q Consensus      1140 plqpeldsfkeeldkyfknhtspdvdlgdisginasvvni-qkeidrlnevaknlneslidlqelg 1204 (1273)
                      |..|++..|+|||+|+|||+++...|+.. .-+|++++|+ ++||++|++++|+|+..-.+||.+-
T Consensus      1235 ~~~p~~~df~~el~~~~~n~~~~~p~~~~-~~~N~t~Lnlt~~Ei~~L~~~~~~L~~~~~el~~~I 1299 (1322)
T 6OHW_A         1235 TSIPNLPDFKEELDQWFKNQTSVAPDLSL-DYINVTFLDLLIKRMKQIEDKIEEIESKQKKIENEI 1299 (1322)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CCCCCCCChHHHHHHHHhcCCCCCCCCCc-cccccceecccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985555543 2299999999 6999999999999999888887654


No 9
>6NZK_A Spike surface glycoprotein; Coronavirus spike glycoprotein, sialic acid; HET: MJJ, MAN, NAG, BMA; 2.8A {Human coronavirus OC43}
Probab=100.00  E-value=7.3e-190  Score=1602.12  Aligned_cols=1144  Identities=29%  Similarity=0.505  Sum_probs=895.1  Template_Neff=3.700

Q sp|P0DTC2|SPIK    2 FVFLVLLP-----LVSSQCVNLTTRTQLP---PAYT-----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAI   68 (1273)
Q Consensus         2 fvflvllp-----lvssqcvnlttrtqlp---payt-----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhai   68 (1273)
                      |+|+.|+|     +....|.. ....-+.   |.++     -+-.+|+||||..++++..+-.|++|.+.-++.+-.-  
T Consensus        13 ~~~~~~~~~~~~~i~~~~C~~-~~~~~~~~~~~~~~~~~id~s~~~G~yYp~~rvysN~tll~~glfp~~gs~~~~y~--   89 (1322)
T 6NZK_A           13 YLLGMLVASVLAVIGDLKCTS-DNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMA--   89 (1322)
T ss_dssp             ------------CCSSBCCCC-TTEECCCCCSCCBCSSCCCCTTSTTCBCCTEEECCSEEEEEEEEECCTTCCCEECC--
T ss_pred             HHHHHHHHHHHHHhcCccccc-cCCCCCCCCCCCCCcceeecccCceeEEecCeEEeeeeeEecceecCCCCceEEee--
Confidence            56666655     33445765 2222222   3333     3456899999999999999999999999877665321  


Q sp|P0DTC2|SPIK   69 HVSGTNG---TKRFDNPVLPFNDGVYFASTEKSNIIRGW---------IFGTTLDSKTQSLLIVNNATN-----------  125 (1273)
Q Consensus        69 hvsgtng---tkrfdnpvlpfndgvyfasteksniirgw---------ifgttldsktqsllivnnatn-----------  125 (1273)
                       .+|++-   --.++++..||+||++....+..|. +||         +||+|.+...++++|.++-.+           
T Consensus        90 -~~~t~~~s~~~~y~~~~~~F~dGifvkv~~~~~~-t~~~~~~~yp~~~fGstf~N~s~tvVI~P~~~~~~~~~~~~~~~  167 (1322)
T 6NZK_A           90 -LKGSVLLSRLWFKPPFLSDFINGIFAKVKNTKVI-KDRVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGDNKLQG  167 (1322)
T ss_dssp             -CEESSCEEGGGGSTTTEEECSSEEEEEEECEEEE-ETTEEEEECCCEEEESSCSTTSCEEEEEEEEEC-------CCEE
T ss_pred             -eecccccccccccCCccccccCcEEEEEEeeccc-CCCceeeccCceEEeccccCCeeEEEEccCCCCcCccccccccc
Confidence             223322   2456777889999997766655544 444         699999999999999987664           


Q sp|P0DTC2|SPIK  126 -VVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIY  204 (1273)
Q Consensus       126 -vvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiy  204 (1273)
                       ..|.+|.|..|..|...+++.-+| +.  -+++. ....+|+|.|. +.|-.|...  ..|-    |.|++.||.|-+|
T Consensus       168 ~~~it~C~~~vC~~p~~~~~~~~gn-~~--~~~~~-~d~~~~~~~~~-~nfT~d~~~--~~~~----f~F~q~~G~fy~Y  236 (1322)
T 6NZK_A          168 LLEVSVCQYNMCEYPQTICHPNLGN-HR--KELWH-LDTGVVSCLYK-RNFTYDVNA--DYLY----FHFYQEGGTFYAY  236 (1322)
T ss_dssp             EEEEEEECCCEEEEEEEECCTTTCC-SS--CCEEE-CCSSCCCEEEE-EEEEECTTC--SEEE----EEEEEETTEEEEE
T ss_pred             ceEEeeeeeEecCCCeeEEecCCCC-Cc--eeeeE-eecCCceEEEe-eeecccccc--ceee----EEEEEeCCeEEEE
Confidence             347899999999999988875444 22  23444 66788998765 455444322  1111    9999999999887


Q sp|P0DTC2|SPIK  205 SKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGT  284 (1273)
Q Consensus       205 skhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengt  284 (1273)
                      ..+...+.      .|     +...+.|...+++-   .+-|+..++         ..++|||++|.+|+|||+|++||.
T Consensus       237 y~d~~~~~------~f-----~f~~~~~~~~~~yy---v~p~~~~~~---------~~~~~~v~~L~~~~~Ll~fd~~G~  293 (1322)
T 6NZK_A          237 FTDTGVVT------KF-----LFNVYLGMALSHYY---VMPLTCNSK---------LTLEYWVTPLTSRQYLLAFNQDGI  293 (1322)
T ss_dssp             EESSSSSB------EE-----EEEEECSSCCCEEE---ECCEECSSC---------CCCCEEEEECEEEEEEEEECTTSC
T ss_pred             EecCCCCc------ce-----eccccceeccceeE---eceeecCCc---------cceeEEEEeceeeeEEEEecCCCe
Confidence            44432221      00     01111122222222   222333332         668999999999999999999999


Q sp|P0DTC2|SPIK  285 ITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVAD  364 (1273)
Q Consensus       285 itdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvad  364 (1273)
                      ||+||||+-|+++|-||..+||.+++|+|++|+||+||...++|.+.....|+|.++++|.++.++|.|.|+.++||..|
T Consensus       294 It~AvDC~~~~~sEl~C~t~sf~~~tGVY~lS~y~aqp~~~V~~~~~~~~~C~~~~~~~~~~~P~p~~w~R~~f~nCnfn  373 (1322)
T 6NZK_A          294 IFNAVDCMSDFMSEIKCKTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPNCNIEAWLNDKSVPSPLNWERKTFSNCNFN  373 (1322)
T ss_dssp             EEEEEETTSSHHHHHHHHTTCSSCCSEEEECCCEECCCSEEEEECCSSCCBCCHHHHHTCSEEECSTTCEEEEEESCEEC
T ss_pred             EeEEEecccCcchhheeeecccCCCCceeecCCeEEEeeeEEEEeCCCCCCCCHHHHhcCCCCCCccceEEeEEecCCCC
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q sp|P0DTC2|SPIK  365 YSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSK  444 (1273)
Q Consensus       365 ysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldsk  444 (1273)
                      +++|++...+++|+||||+|.||.+.||..|++|.|.|..+..++++||.+|.|++||||+|++|+||+++|+-.+.+..
T Consensus       374 ~s~ll~~~~~~~f~C~~ispskl~~~C~ssvtiD~F~ip~~~~~~l~~g~~g~~~~~NYkl~~~~~~C~l~y~~~~~nvn  453 (1322)
T 6NZK_A          374 MSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVS  453 (1322)
T ss_dssp             HHHHHHHCEEEEEEEESSCGGGGGGCEEEEEEEEEEECCTTCGGGGSTTCCCHCCCCCCCCCSSSCEEEEEEEEEGGGCE
T ss_pred             HHHHhhhceeceeeecCCCHHHHcccccceeEEEEEeccCCcceeecCCCCcHHHhcCccCCCCCCceEEEEEccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999995554333


Q sp|P0DTC2|SPIK  445 V----GGNYNYLYRLFRKSNLKPFERDI---STEIYQ-----AGSTPCN----------G--------------------  482 (1273)
Q Consensus       445 v----ggnynylyrlfrksnlkpferdi---steiyq-----agstpcn----------g--------------------  482 (1273)
                      +    -++||.-|+.-..+.++|.++..   ...+|.     .+.+-|+          +                    
T Consensus       454 ~t~~Nps~wn~ry~f~~~~~~~~~~~~~~~~hdvvYs~~cf~~~~~yCPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  533 (1322)
T 6NZK_A          454 VSRFNPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAPKNFCPCKLNGSCVGSGPGKNNGIGTCPAGTNYLTCD  533 (1322)
T ss_dssp             EECCCCCHHHHHTTCCHHHHSCBTTTSSBCTTEEEEESSCEECCTTEEEEECC-----------CCBBCCCTTCEEECC-
T ss_pred             cccCCccchhhccCcccccccCCCCCCcCCCcceeeeeeeecCCCCcCCCcCCCcccCCCCCCCCCCCcCCCCccccccc
Confidence            2    34677777766667777765411   112222     2222121          0                    


Q sp|P0DTC2|SPIK  483 ----VEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL-----------------------------------LHAPAT  523 (1273)
Q Consensus       483 ----vegfncyfplqsygfqptngvgyqpyrvvvlsfel-----------------------------------lhapat  523 (1273)
                          ..+..|.-+...+--....|+|+++++++|++++.                                   ...+.|
T Consensus       534 ~~~~~~~~~~~~~~~~~q~~~~~gvg~~c~gl~Vi~~k~g~~~C~C~~~af~g~~~~~~~~~~~~~i~~~~~~~~~~s~t  613 (1322)
T 6NZK_A          534 NLCTPDPITFTGTYKCPQTKSLVGIGEHCSGLAVKSDYCGGNSCTCRPQAFLGWSADSCLQGDKCNIFANFILHDVNSGL  613 (1322)
T ss_dssp             ---CSCSSSCCCSSCCSSEECCCCTTCCCCCCEECGGGEEBTTTEECGGGEESEEEEECEETTEEEEEEEEEEEEETSSS
T ss_pred             cCCCCCCCccccccCCCCceeeeecccccceEEEEecccCCCCccCCCccccCCCcccccCCCccccccceeecCCCCCC
Confidence                01122211111111123569999999999999988                                   667889


Q sp|P0DTC2|SPIK  524 VCGP---KKSTNLVKNKCVNFNFNGLTGTGVLTESN-KKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVIT  599 (1273)
Q Consensus       524 vcgp---kkstnlvknkcvnfnfngltgtgvltesn-kkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvit  599 (1273)
                      ||++   +.+++++.++||++|..|.||+||+++++ ..++.++.+..|-+.-..+++++.++++..|+||..|.++++.
T Consensus       614 vC~~d~~~~~snI~Ln~CVdYNIYGitGqGVItn~n~~~~~~~~GL~ydssgdL~gfKn~ttg~~YsV~PC~~g~VVGi~  693 (1322)
T 6NZK_A          614 TCSTDLQKANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYITNRTFMIRSCYSGRVSAAF  693 (1322)
T ss_dssp             EEECSSCCCCCCCCBSSEEEEEETTEEEEEEEEEECCCCCCTTEEEEECTTSCEEEEECTTTCCEEEEECCCEECCEEEE
T ss_pred             cCCCcccccCceEEeCeeeeEEeCCccceEEEEecCCCceeccCcEEEcCCCCEEEEEcCCCCcEEEEEeCccCcEEEEE
Confidence            9998   56799999999999999999999999964 5566778888888888889999999999999999999999998


Q sp|P0DTC2|SPIK  600 PGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVN--NSYECDIPIGAGICASYQTQ  677 (1273)
Q Consensus       600 pgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvn--nsyecdipigagicasyqtq  677 (1273)
                      ...  ++..+.+|.++.|.+|....|..+++|        .+-|+|-.||++++.+..  ...+|++|.|.|+|+.|.+ 
T Consensus       694 tS~--n~t~a~lF~n~~C~~v~~~~~~~~~~~--------~~~f~t~~Gcv~~a~~~t~~~v~~c~~~~g~~~C~~~~~-  762 (1322)
T 6NZK_A          694 HAN--SSEPALLFRNIKCNYVFNNSLTRQLQP--------INYFDSYLGCVVNAYNSTAISVQTCDLTVGSGYCVDYSK-  762 (1322)
T ss_dssp             CTT--CSSCEEEEETCCHHHHHHTTTTTTCCC--------SCEEEETTEEEESSEEEEEEEESCCSEEEETTEEEEEC--
T ss_pred             eCC--CCCccceeccceeceeeecccceeecc--------ccceeccccceecceecCCceeccccccccCceeeecCC-
Confidence            765  445789999999999998766655555        233999999999999986  4889999999999999988 


Q sp|P0DTC2|SPIK  678 TNSPRRARSVAS--QSIIAYTMSL-----GAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECS  750 (1273)
Q Consensus       678 tnsprrarsvas--qsiiaytmsl-----gaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecs  750 (1273)
                         |+++++...  ..+..| +.+     ........+...|.||+||||+|++|-++++|.|.+|||.+|+||++.+|.
T Consensus       763 ---~~gs~~~~~~~~~l~~~-~p~~~~~v~~~~~~~~~~~~IsIP~NFTlsvt~EyIQt~~~kVsIDCa~YVC~~~~~C~  838 (1322)
T 6NZK_A          763 ---NGGSGGAITTGYRFTNF-EPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACK  838 (1322)
T ss_dssp             -----------CCSEEEEEE-CCCCCEEECCCSSCBTTBEEEEEEEEEEEEEEEEEEECCCCEEEECHHHHHSCSCHHHH
T ss_pred             ---CCCCCceeccCceeeec-cceeecccccCCCCCcceEEEEecCceeeEEEEEEeeecCCCeEEehhheecCCCHHHH
Confidence               444433222  222233 222     111223455568999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  751 NLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKT----PPIKDF--GGFNFSQILPDPS----KPSKRSFIED  820 (1273)
Q Consensus       751 nlllqygsfctqlnraltgiaveqdkntqevfaqvkqiykt----ppikdf--ggfnfsqilpdps----kpskrsfied  820 (1273)
                      +||.|||+||..+|+||.+++..+|....+++..+++-++.    +.+..|  |+||||.+||.+.    .+++||+|||
T Consensus       839 ~LL~QYgs~C~~I~~aL~~v~~~~d~~~~~~~~~~~~~~~~s~~l~~~~~~~~g~fN~s~ll~~~~s~~~~~~~RSaIED  918 (1322)
T 6NZK_A          839 SQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECSKASSRSAIED  918 (1322)
T ss_dssp             HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEGGGGTCCCCEETTEECTTTCCCCCC----CCSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhcCccccccccccccCCCCCccccccccCCCCCCCcCccccHHHH
Confidence            99999999999999999999999999999999999998876    444445  6899999999875    3578999999


Q sp|P0DTC2|SPIK  821 LLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900 (1273)
Q Consensus       821 llfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam  900 (1273)
                      |||+||..+|.|+.+.|.+|.+...+|||+|||.|||+.||||++++||++.||++|++|....|||+    |..||||+
T Consensus       919 LLFnKV~tsglG~~~~Yk~Ct~g~~i~DL~CAQyyNGImVLPpVvd~~~~amYTaSL~g~m~~gg~Ta----aaaIPFa~  994 (1322)
T 6NZK_A          919 LLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSENQFSGYTLAATSASLFPPWTA----AAGVPFYL  994 (1322)
T ss_dssp             HHHHTCSSSHHHHHHHHHTTTTTCCTTCHHHHHHHTTEEEECCSSCHHHHHHHHHHHHHTTTSSSCGG----GTTCCHHH
T ss_pred             HHcceeeeCCcchHHHhHhccCCccHHHhhccceeCcEEEeCCCCCHHHHHHHHHHHHHHhhccCchh----cccCcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997    55689999


Q sp|P0DTC2|SPIK  901 QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980 (1273)
Q Consensus       901 qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndi  980 (1273)
                      ||.||+||+|+||+||.||||+|||.||.||+.||+.++.|++||.|+|||||++++||++|++||+.|||||||.++||
T Consensus       995 ~vq~RlN~v~lt~~VL~~NQk~iA~sFN~Ai~~iq~~f~tt~~AL~KiQ~VVN~q~~aL~~L~~qL~~nFgAISssI~DI 1074 (1322)
T 6NZK_A          995 NVQYRINGLGVTMDVLSQNQKLIANAFNNALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEI 1074 (1322)
T ss_dssp             HHHHHHHTTTCCHHHHTTCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHGGGGCCTTSSCSCHHHH
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  981 LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGV 1060 (1273)
Q Consensus       981 lsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgv 1060 (1273)
                      ++|||++||++||||||+|||.+|++||+|||+|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+||.||+|+
T Consensus      1075 y~RLD~LEAdaQVDRLItGRL~aLNafVtQ~L~~~~eVr~sr~LA~qKINECVKSQS~R~gFCGnG~Hi~Si~q~AP~Gi 1154 (1322)
T 6NZK_A         1075 LSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGL 1154 (1322)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSCCCSCCSSSTTSSEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCeeEEEeeeccCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1061 VFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYD 1139 (1273)
Q Consensus      1061 vflhvtyvpaqeknfttapaichdg-kahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd 1139 (1273)
                      +|+|.+|+|.+.++.+++|.+|++| ++..|++|+|+.+...|++|.|++|+|..||.+|...-..|||...-+|+++..
T Consensus      1155 ~F~H~~~~Pt~~~~V~a~~GlC~~~~~~~~~~~g~f~~~n~~~~~T~r~~y~Pr~~t~~d~v~~~sC~v~y~n~~~~~l~ 1234 (1322)
T 6NZK_A         1155 YFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLN 1234 (1322)
T ss_dssp             EEEEEEEEEEEEEEEEEESCEECTTSCEEEESSEEEEEETTEEEEEESSSCCEEECCGGGEEEESSCCTTSEECTTCCCC
T ss_pred             EEEEeEecccceEEEEEeeeEEecCCeeEEecceEEEeeCCEEEEeccCcccCCCCCccceEEeccceeEEEEcCcccCC
Confidence            9999999999999999999999995 899999999999988999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1140 PLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNI-QKEIDRLNEVAKNLNESLIDLQELG 1204 (1273)
Q Consensus      1140 plqpeldsfkeeldkyfknhtspdvdlgdisginasvvni-qkeidrlnevaknlneslidlqelg 1204 (1273)
                      |..|++..|+|||+|+|||+++...|+.. .-+|++++|+ ++||++|++++|+|+..-.+||.+-
T Consensus      1235 ~~~p~~~df~~el~~~~~n~~~~~p~~~~-~~~N~t~Lnlt~~Ei~~L~~~~~~L~~~~~el~~~I 1299 (1322)
T 6NZK_A         1235 TSIPNLPDFKEELDQWFKNQTSVAPDLSL-DYINVTFLDLLIKRMKQIEDKIEEIESKQKKIENEI 1299 (1322)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CCCCCCCChHHHHHHHHhcCCCCCCCCCc-cccccceecccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985555543 2299999999 6999999999999999888887654


No 10
>6M15_A Spike glycoprotein; VIRAL PROTEIN; HET: BMA, NAG; 2.38A {Rhinolophus bat coronavirus HKU2}
Probab=100.00  E-value=6.1e-154  Score=1294.04  Aligned_cols=832  Identities=28%  Similarity=0.472  Sum_probs=633.8  Template_Neff=3.500

Q sp|P0DTC2|SPIK  273 RTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYA  352 (1273)
Q Consensus       273 rtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvya  352 (1273)
                      -++||.|+.||+|+|++||+-+|++|-+|..++|....|.|..+++++ |+-..+|.+++ ..|+|..++||..  +++.
T Consensus       216 s~~Ll~fDvNGtItdaIdC~~Sp~~eLaCsy~SFnfsdGVYpfSny~v-pkfiVYR~ssv-~nctFsN~snA~p--Si~~  291 (1118)
T 6M15_A          216 SSVLVLTDQSGAVTRYSYCADGFVNGLQCKLRLFDIPPGVYSNSEVEY-PVALYTVVHNM-SVCPQRPESYCGS--NYCP  291 (1118)
T ss_dssp             EEEEEEECTTSCEEEEEETTSSHHHHHHHHHTCSSCCSEEEEEEECCC-CEEEESCCSCC-EECCCCCCCCCCS--SCCC
T ss_pred             eeeeeeecCCCcEEEEEeccCCcccccceEeccccCCCceeccCCcee-ceEEEEEecCc-ceeecCHHhcCCC--Cccc
Confidence            468999999999999999999999999999999999999999999999 99888998888 8899999999988  9999


Q sp|P0DTC2|SPIK  353 WNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-YKLPDDFTG  431 (1273)
Q Consensus       353 wnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadyn-yklpddftg  431 (1273)
                      |.|+.++||..|+|.|.                                             .+-+..|| |.+|.    
T Consensus       292 wqR~tfsNCNFNFSfLs---------------------------------------------Sdfm~SYN~y~~P~----  322 (1118)
T 6M15_A          292 FKRVVFSNCVVNYTSWT---------------------------------------------SGLLRDYQHLVLPN----  322 (1118)
T ss_dssp             CCEEEECSEECCGGGGS---------------------------------------------CSCHHHHGGGBCTT----
T ss_pred             cEEEEeeceeeeccEec---------------------------------------------CcchheeeeccCCC----
Confidence            99999999999999988                                             12222333 33343    


Q sp|P0DTC2|SPIK  432 CVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI------YQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGY  505 (1273)
Q Consensus       432 cviawnsnnldskvggnynylyrlfrksnlkpferdistei------yqagstpcngvegfncyfplqsygfqptngvgy  505 (1273)
                      |    |- ++.+ .+-..|.++--.+.+-+-  .....+--      |+-|...|-|+..-.|-               .
T Consensus       323 c----nF-nPet-Ngl~FNsl~g~Ckqsv~~--f~g~~tcCy~~VIS~~~gp~~ckG~~~geCg---------------~  379 (1118)
T 6M15_A          323 G----KF-NPFT-ECNGLNRIVDDCVTGFVL--RVGRGTAVNRTVITPYLKPNECFGWSWNDYQ---------------D  379 (1118)
T ss_dssp             S----CB-CSCS-EEESBCSSCCSEEECEEE--EEEEEECBTTBCCCCCCCTTEEEEEEEEETT---------------T
T ss_pred             C----CC-CCcc-CCcCCccccCCCccceEE--EecCceeeEEEEECCCCCCCccceeeecccc---------------c
Confidence            1    10 0111 111111100000000000  00000000      01133334444433221               0


Q sp|P0DTC2|SPIK  506 QPYRVVVLSFEL-L-HAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLE  583 (1273)
Q Consensus       506 qpyrvvvlsfel-l-hapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtle  583 (1273)
                          -|-..+.| - -.++|+|.. ..++++.++||++|..|.+|+||++++|..+..+|.+..+-.| ..++++  +++
T Consensus       380 ----~Vyv~~~~~g~S~~aTvCPv-d~tnI~Ld~CVdYNIYG~tGqGVItnsn~~~~~~q~GLy~ts~-L~~vk~--tg~  451 (1118)
T 6M15_A          380 ----SIYDWWIADFVSTGAFVCEK-NPDAPRTGVCITYTIEKVTFQGVLYESNFTFAQYYNVLYFGSQ-LKYVRI--LGK  451 (1118)
T ss_dssp             ----TEEEEEEEECCCCSCEEESS-CCCCCCTTSEEEEEETTEEEEEEEEECCCCCCTTCSEEEETTE-EEEEEE--TTE
T ss_pred             ----eEEeEeecCCccCCcccCCC-CCCCCccCeeEeEEeCCceeeEEEEEcCccceehhceEEEeee-eEEEEe--CCc
Confidence                22333333 1 356899988 6689999999999999999999999999988888888777444 467777  999


Q sp|P0DTC2|SPIK  584 ILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN--SYE  661 (1273)
Q Consensus       584 ilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnn--sye  661 (1273)
                      +..|+||..+.++++..|   ++.++.|++.+||.++.+..+..   +.||-.++.  -|||-.||++++...++  ..+
T Consensus       452 ~Y~V~PC~~v~qQvVv~~---~~~vglLt~S~ncn~~~~~~~~~---~~r~~~~~~--~fdt~~Gcv~~~~n~~~~~~~~  523 (1118)
T 6M15_A          452 VYEVAPCFEASYDVLFRS---SSSFGLLYRSFDCNQLRISASRF---AERLLPSHN--GTATALGCLFNATYAPNDTMVN  523 (1118)
T ss_dssp             EEEEECCTTSEEEEEEEE---TTEEEEEETTCCCCHHHHTSSTT---TTTCCGGGC--SEEETTEEEESSEEEEEEEESS
T ss_pred             EEEEecCcccceeEEEeC---CCeEEEEEcccccceeeeecccc---ccccCCCCC--CcccceeeEEEeecCCCCCCcc
Confidence            999999999999999988   47899999999998887655544   334443333  39999999999987744  699


Q sp|P0DTC2|SPIK  662 CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMY  741 (1273)
Q Consensus       662 cdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmy  741 (1273)
                      |+.|+|.|||+.+ .-.-.+||.+-+      .+. ...  .+.....+.|.||+||||+|++|-++++|.|.+|||.+|
T Consensus       524 C~~p~g~giC~dg-~~~~~~r~~~l~------~~~-~~~--v~p~~~~~~IsIPtNFTlsvt~EYIQt~~~kVsVDCa~Y  593 (1118)
T 6M15_A          524 CTNPLGDGFCADL-LSNVVVRRMTFE------KHD-TTY--VAPVTNERFTELPLDHQLVLTEQFLQTTMPKFSISCETY  593 (1118)
T ss_dssp             CSSEEETTEEEEC-SSSCEEEEECCC------CBC-CSC--CCCCCSSEEEEEEEEEEEEEEEEEEECCCCEEEECHHHH
T ss_pred             CCCCceeeEecCC-cceeceeeeeee------ccc-ccc--ccCcccceeEEccCceEeEEEEEEEeccCCCeEEecchh
Confidence            9999999999999 333334432222      221 111  122334477899999999999999999999999999999


Q sp|P0DTC2|SPIK  742 ICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQI-LPDPS----KPSKRS  816 (1273)
Q Consensus       742 icgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqi-lpdps----kpskrs  816 (1273)
                      +||++.+|.+||.|||+||..+|+||.+.+..+|.+..+++..+|..... +....|+||||++ +|..+    ++++||
T Consensus       594 VCngn~~C~~LL~QYgs~C~~I~~aL~~~a~led~~~~~~~s~~~~~~~~-~~~~~~~FN~S~~~lp~~~~~~~~~~~RS  672 (1118)
T 6M15_A          594 ICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVSGLYSTIAAKTSS-ITPTTDRFNVSQFFLPKVQSNSERFESRS  672 (1118)
T ss_dssp             HSSSCHHHHTTGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHBBCCCS-SCCBCSSCCCTTTTSCCCCCSSSCCCCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccC-cCCCCCCccccccccCCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999888766433 3366888999998 67654    346899


Q sp|P0DTC2|SPIK  817 FIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA--GAAL  894 (1273)
Q Consensus       817 fiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfga--gaal  894 (1273)
                      +||||||+||..+|.|+.+.|.+|.+ -.+|||+|||.+||+.||||++++||++.||     +.++.||+||+  ++|.
T Consensus       673 ~IEDLLF~KV~t~glG~~~~Yk~Ct~-~~i~DL~CaQyyNGimVLP~v~d~~~~amYT-----asl~ggm~~Ggit~sAa  746 (1118)
T 6M15_A          673 VIEDLLFSKIETTGPGFYGDYYNCKK-NAIQDLTCAQYHNGILVIPPVMDAETLGMYG-----GIAAASLTLGIFGGQAG  746 (1118)
T ss_dssp             HHHHHHHHSSCCCCSSHHHHHHHHHH-HCCTTCCCCCEETTEEEECCSSCGGGCCTTS-----STTCBCSSTTTTCSSCC
T ss_pred             HHHHHhccceEecCCCchHhHHHhhc-chhhHHhcccccCcEEEcCCCCCHHHHHHHH-----HHHHHHHHhhhhcchhc
Confidence            99999999999999999999999999 6799999999999999999999999999999     44566899988  6789


Q sp|P0DTC2|SPIK  895 QIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAIS  974 (1273)
Q Consensus       895 qipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgais  974 (1273)
                      .|||||||.||+||+|+||+||.||||+|||.||.|++.||+.++.+++||.|+|||||++++||++|++||+.||||||
T Consensus       747 aiPFa~~vq~RlN~valt~~VL~~NQk~iA~sFN~A~~~iq~~f~tt~~AL~KIQ~VVN~q~~aL~~L~~QL~nnFgAIS  826 (1118)
T 6M15_A          747 ITTWSLAMAGRLNALGVVQNALVDDVNKLANGFNQLTASVGKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAIS  826 (1118)
T ss_dssp             CCBHHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHTGGGCCTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSSC
T ss_pred             hhhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  975 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ 1054 (1273)
Q Consensus       975 svlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpq 1054 (1273)
                      |.++||++|||++||++||||||+|||.+|++||+|||+|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+||
T Consensus       827 SSI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtq~l~~~~ev~~sr~LA~qKINECVKSQS~R~GFCGnGtHi~Si~q  906 (1118)
T 6M15_A          827 TNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQ  906 (1118)
T ss_dssp             SCHHHHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTTSSSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccCCCCCCeEeEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1055 SAPHGVVFLHVTYVPAQEKNFTTAPAICHD----GKAHFPREGVFVSNG-THWFVTQRNFYEPQIITTDNTFVSGNCDVV 1129 (1273)
Q Consensus      1055 saphgvvflhvtyvpaqeknfttapaichd----gkahfpregvfvsng-thwfvtqrnfyepqiittdntfvsgncdvv 1129 (1273)
                      .||+|++|+|.+|+|.+-++.+++|.+|++    +++..||+|+|+.+. +.|++|.|++|+|..||.+|.... .||+.
T Consensus       907 ~APnGi~F~H~~y~Pt~~~~V~a~~GlC~~~~~~~~~~~~~~g~f~~~n~~~w~iT~r~my~Pr~it~~d~v~~-sc~v~  985 (1118)
T 6M15_A          907 NAPSGIMFFHYSLIPNNTITVKTTPGLCESDELGSKCIVAKDGVLVSANLSYWQWSPRNLYKPENLTFANVIAV-SRGAN  985 (1118)
T ss_dssp             EETTEEEEEEEEEEEEEEEEEEEESCEESSSSTTCCEEEESSSEEEESSCSSCEEECTTSCCCEECCTTTEEEE-CCCTT
T ss_pred             cCCCeEEEEEEEeccCceeEEEEeeeeEccCCCCCcEEEecccEEEEcCCCEEEECccccccCCCCCccCeEEE-ecCce
Confidence            999999999999999999999999999999    457999999999864 999999999999999999998777 78999


Q sp|P0DTC2|SPIK 1130 IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQY 1209 (1273)
Q Consensus      1130 igivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqy 1209 (1273)
                      ...+|.++..|..|++-.|+|||+|+|||+++.-.||.+.+ +|++++|++.||++|+|+.|+||+++|||++|++||+|
T Consensus       986 y~~vn~t~~~p~ipd~~Df~eel~e~~kn~s~~~pdl~~~~-~N~T~LNLs~EI~~LqevIk~LN~s~IdLe~L~~~e~Y 1064 (1118)
T 6M15_A          986 YTTLNRTFDIPELNSTFPIDEEFREYFQNMSSELQALKNLT-ADMSKLNISAEIQLINEIAHNVSNMRVEVEKFQRYVNY 1064 (1118)
T ss_dssp             CEECSSCCCC----------------------------------------------------------------------
T ss_pred             EEEeccccCCCCCcCCCChHHHHHHHHhhcCccccccccce-ecCceechHHHHHHHHHHHHHHHhccccHHHhCeeeEE
Confidence            99999999999999999999999999999988777787766 99999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1210 IKWPWY 1215 (1273)
Q Consensus      1210 ikwpwy 1215 (1273)
                      |||.-.
T Consensus      1065 iKW~~~ 1070 (1118)
T 6M15_A         1065 VKLEVL 1070 (1118)
T ss_dssp             ------
T ss_pred             eeceee
Confidence            999854


No 11
>6M15_B Spike glycoprotein; VIRAL PROTEIN; HET: NAG, BMA; 2.38A {Rhinolophus bat coronavirus HKU2}
Probab=100.00  E-value=6.1e-154  Score=1294.04  Aligned_cols=832  Identities=28%  Similarity=0.472  Sum_probs=633.8  Template_Neff=3.500

Q sp|P0DTC2|SPIK  273 RTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYA  352 (1273)
Q Consensus       273 rtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvya  352 (1273)
                      -++||.|+.||+|+|++||+-+|++|-+|..++|....|.|..+++++ |+-..+|.+++ ..|+|..++||..  +++.
T Consensus       216 s~~Ll~fDvNGtItdaIdC~~Sp~~eLaCsy~SFnfsdGVYpfSny~v-pkfiVYR~ssv-~nctFsN~snA~p--Si~~  291 (1118)
T 6M15_B          216 SSVLVLTDQSGAVTRYSYCADGFVNGLQCKLRLFDIPPGVYSNSEVEY-PVALYTVVHNM-SVCPQRPESYCGS--NYCP  291 (1118)
T ss_dssp             EEEEEEECTTSCEEEEEETTSSHHHHHHHHHTCSSCCSEEEEEEECCC-CEEEESCCSCC-EECCCCCCCCCCS--SCCC
T ss_pred             eeeeeeecCCCcEEEEEeccCCcccccceEeccccCCCceeccCCcee-ceEEEEEecCc-ceeecCHHhcCCC--Cccc
Confidence            468999999999999999999999999999999999999999999999 99888998888 8899999999988  9999


Q sp|P0DTC2|SPIK  353 WNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN-YKLPDDFTG  431 (1273)
Q Consensus       353 wnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadyn-yklpddftg  431 (1273)
                      |.|+.++||..|+|.|.                                             .+-+..|| |.+|.    
T Consensus       292 wqR~tfsNCNFNFSfLs---------------------------------------------Sdfm~SYN~y~~P~----  322 (1118)
T 6M15_B          292 FKRVVFSNCVVNYTSWT---------------------------------------------SGLLRDYQHLVLPN----  322 (1118)
T ss_dssp             CCEEEECSEECCGGGGS---------------------------------------------CSCHHHHGGGBCTT----
T ss_pred             cEEEEeeceeeeccEec---------------------------------------------CcchheeeeccCCC----
Confidence            99999999999999988                                             12222333 33343    


Q sp|P0DTC2|SPIK  432 CVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI------YQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGY  505 (1273)
Q Consensus       432 cviawnsnnldskvggnynylyrlfrksnlkpferdistei------yqagstpcngvegfncyfplqsygfqptngvgy  505 (1273)
                      |    |- ++.+ .+-..|.++--.+.+-+-  .....+--      |+-|...|-|+..-.|-               .
T Consensus       323 c----nF-nPet-Ngl~FNsl~g~Ckqsv~~--f~g~~tcCy~~VIS~~~gp~~ckG~~~geCg---------------~  379 (1118)
T 6M15_B          323 G----KF-NPFT-ECNGLNRIVDDCVTGFVL--RVGRGTAVNRTVITPYLKPNECFGWSWNDYQ---------------D  379 (1118)
T ss_dssp             S----CB-CSCS-EEESBCSSCCSEEECEEE--EEEEEECBTTBCCCCCCCTTEEEEEEEEETT---------------T
T ss_pred             C----CC-CCcc-CCcCCccccCCCccceEE--EecCceeeEEEEECCCCCCCccceeeecccc---------------c
Confidence            1    10 0111 111111100000000000  00000000      01133334444433221               0


Q sp|P0DTC2|SPIK  506 QPYRVVVLSFEL-L-HAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLE  583 (1273)
Q Consensus       506 qpyrvvvlsfel-l-hapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtle  583 (1273)
                          -|-..+.| - -.++|+|.. ..++++.++||++|..|.+|+||++++|..+..+|.+..+-.| ..++++  +++
T Consensus       380 ----~Vyv~~~~~g~S~~aTvCPv-d~tnI~Ld~CVdYNIYG~tGqGVItnsn~~~~~~q~GLy~ts~-L~~vk~--tg~  451 (1118)
T 6M15_B          380 ----SIYDWWIADFVSTGAFVCEK-NPDAPRTGVCITYTIEKVTFQGVLYESNFTFAQYYNVLYFGSQ-LKYVRI--LGK  451 (1118)
T ss_dssp             ----TEEEEEEEECCCCSCEEESS-CCCCCCTTSEEEEEETTEEEEEEEEECCCCCCTTCSEEEETTE-EEEEEE--TTE
T ss_pred             ----eEEeEeecCCccCCcccCCC-CCCCCccCeeEeEEeCCceeeEEEEEcCccceehhceEEEeee-eEEEEe--CCc
Confidence                22333333 1 356899988 6689999999999999999999999999988888888777444 467777  999


Q sp|P0DTC2|SPIK  584 ILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN--SYE  661 (1273)
Q Consensus       584 ilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnn--sye  661 (1273)
                      +..|+||..+.++++..|   ++.++.|++.+||.++.+..+..   +.||-.++.  -|||-.||++++...++  ..+
T Consensus       452 ~Y~V~PC~~v~qQvVv~~---~~~vglLt~S~ncn~~~~~~~~~---~~r~~~~~~--~fdt~~Gcv~~~~n~~~~~~~~  523 (1118)
T 6M15_B          452 VYEVAPCFEASYDVLFRS---SSSFGLLYRSFDCNQLRISASRF---AERLLPSHN--GTATALGCLFNATYAPNDTMVN  523 (1118)
T ss_dssp             EEEEECCTTSEEEEEEEE---TTEEEEEETTCCCCHHHHTSSTT---TTTCCGGGC--SEEETTEEEESSEEEEEEEESS
T ss_pred             EEEEecCcccceeEEEeC---CCeEEEEEcccccceeeeecccc---ccccCCCCC--CcccceeeEEEeecCCCCCCcc
Confidence            999999999999999988   47899999999998887655544   334443333  39999999999987744  699


Q sp|P0DTC2|SPIK  662 CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMY  741 (1273)
Q Consensus       662 cdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmy  741 (1273)
                      |+.|+|.|||+.+ .-.-.+||.+-+      .+. ...  .+.....+.|.||+||||+|++|-++++|.|.+|||.+|
T Consensus       524 C~~p~g~giC~dg-~~~~~~r~~~l~------~~~-~~~--v~p~~~~~~IsIPtNFTlsvt~EYIQt~~~kVsVDCa~Y  593 (1118)
T 6M15_B          524 CTNPLGDGFCADL-LSNVVVRRMTFE------KHD-TTY--VAPVTNERFTELPLDHQLVLTEQFLQTTMPKFSISCETY  593 (1118)
T ss_dssp             CSSEEETTEEEEC-SSSCEEEEECCC------CBC-CSC--CCCCCSSEEEEEEEEEEEEEEEEEEECCCCEEEECHHHH
T ss_pred             CCCCceeeEecCC-cceeceeeeeee------ccc-ccc--ccCcccceeEEccCceEeEEEEEEEeccCCCeEEecchh
Confidence            9999999999999 333334432222      221 111  122334477899999999999999999999999999999


Q sp|P0DTC2|SPIK  742 ICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQI-LPDPS----KPSKRS  816 (1273)
Q Consensus       742 icgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqi-lpdps----kpskrs  816 (1273)
                      +||++.+|.+||.|||+||..+|+||.+.+..+|.+..+++..+|..... +....|+||||++ +|..+    ++++||
T Consensus       594 VCngn~~C~~LL~QYgs~C~~I~~aL~~~a~led~~~~~~~s~~~~~~~~-~~~~~~~FN~S~~~lp~~~~~~~~~~~RS  672 (1118)
T 6M15_B          594 ICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVSGLYSTIAAKTSS-ITPTTDRFNVSQFFLPKVQSNSERFESRS  672 (1118)
T ss_dssp             HSSSCHHHHTTGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHBBCCCS-SCCBCSSCCCTTTTSCCCCCSSSCCCCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccC-cCCCCCCccccccccCCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999888766433 3366888999998 67654    346899


Q sp|P0DTC2|SPIK  817 FIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA--GAAL  894 (1273)
Q Consensus       817 fiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfga--gaal  894 (1273)
                      +||||||+||..+|.|+.+.|.+|.+ -.+|||+|||.+||+.||||++++||++.||     +.++.||+||+  ++|.
T Consensus       673 ~IEDLLF~KV~t~glG~~~~Yk~Ct~-~~i~DL~CaQyyNGimVLP~v~d~~~~amYT-----asl~ggm~~Ggit~sAa  746 (1118)
T 6M15_B          673 VIEDLLFSKIETTGPGFYGDYYNCKK-NAIQDLTCAQYHNGILVIPPVMDAETLGMYG-----GIAAASLTLGIFGGQAG  746 (1118)
T ss_dssp             HHHHHHHHSSCCCCSSHHHHHHHHHH-HCCTTCCCCCEETTEEEECCSSCGGGCCTTS-----STTCBCSSTTTTCSSCC
T ss_pred             HHHHHhccceEecCCCchHhHHHhhc-chhhHHhcccccCcEEEcCCCCCHHHHHHHH-----HHHHHHHHhhhhcchhc
Confidence            99999999999999999999999999 6799999999999999999999999999999     44566899988  6789


Q sp|P0DTC2|SPIK  895 QIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAIS  974 (1273)
Q Consensus       895 qipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgais  974 (1273)
                      .|||||||.||+||+|+||+||.||||+|||.||.|++.||+.++.+++||.|+|||||++++||++|++||+.||||||
T Consensus       747 aiPFa~~vq~RlN~valt~~VL~~NQk~iA~sFN~A~~~iq~~f~tt~~AL~KIQ~VVN~q~~aL~~L~~QL~nnFgAIS  826 (1118)
T 6M15_B          747 ITTWSLAMAGRLNALGVVQNALVDDVNKLANGFNQLTASVGKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAIS  826 (1118)
T ss_dssp             CCBHHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHTGGGCCTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSSC
T ss_pred             hhhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  975 SVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ 1054 (1273)
Q Consensus       975 svlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpq 1054 (1273)
                      |.++||++|||++||++||||||+|||.+|++||+|||+|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+||
T Consensus       827 SSI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtq~l~~~~ev~~sr~LA~qKINECVKSQS~R~GFCGnGtHi~Si~q  906 (1118)
T 6M15_B          827 TNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQ  906 (1118)
T ss_dssp             SCHHHHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTTSSSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccCCCCCCeEeEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1055 SAPHGVVFLHVTYVPAQEKNFTTAPAICHD----GKAHFPREGVFVSNG-THWFVTQRNFYEPQIITTDNTFVSGNCDVV 1129 (1273)
Q Consensus      1055 saphgvvflhvtyvpaqeknfttapaichd----gkahfpregvfvsng-thwfvtqrnfyepqiittdntfvsgncdvv 1129 (1273)
                      .||+|++|+|.+|+|.+-++.+++|.+|++    +++..||+|+|+.+. +.|++|.|++|+|..||.+|.... .||+.
T Consensus       907 ~APnGi~F~H~~y~Pt~~~~V~a~~GlC~~~~~~~~~~~~~~g~f~~~n~~~w~iT~r~my~Pr~it~~d~v~~-sc~v~  985 (1118)
T 6M15_B          907 NAPSGIMFFHYSLIPNNTITVKTTPGLCESDELGSKCIVAKDGVLVSANLSYWQWSPRNLYKPENLTFANVIAV-SRGAN  985 (1118)
T ss_dssp             EETTEEEEEEEEEEEEEEEEEEEESCEESSSSTTCCEEEESSSEEEESSCSSCEEECTTSCCCEECCTTTEEEE-CCCTT
T ss_pred             cCCCeEEEEEEEeccCceeEEEEeeeeEccCCCCCcEEEecccEEEEcCCCEEEECccccccCCCCCccCeEEE-ecCce
Confidence            999999999999999999999999999999    457999999999864 999999999999999999998777 78999


Q sp|P0DTC2|SPIK 1130 IGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQY 1209 (1273)
Q Consensus      1130 igivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqy 1209 (1273)
                      ...+|.++..|..|++-.|+|||+|+|||+++.-.||.+.+ +|++++|++.||++|+|+.|+||+++|||++|++||+|
T Consensus       986 y~~vn~t~~~p~ipd~~Df~eel~e~~kn~s~~~pdl~~~~-~N~T~LNLs~EI~~LqevIk~LN~s~IdLe~L~~~e~Y 1064 (1118)
T 6M15_B          986 YTTLNRTFDIPELNSTFPIDEEFREYFQNMSSELQALKNLT-ADMSKLNISAEIQLINEIAHNVSNMRVEVEKFQRYVNY 1064 (1118)
T ss_dssp             CEECSSCCCC----------------------------------------------------------------------
T ss_pred             EEEeccccCCCCCcCCCChHHHHHHHHhhcCccccccccce-ecCceechHHHHHHHHHHHHHHHhccccHHHhCeeeEE
Confidence            99999999999999999999999999999988777787766 99999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1210 IKWPWY 1215 (1273)
Q Consensus      1210 ikwpwy 1215 (1273)
                      |||.-.
T Consensus      1065 iKW~~~ 1070 (1118)
T 6M15_B         1065 VKLEVL 1070 (1118)
T ss_dssp             ------
T ss_pred             eeceee
Confidence            999854


No 12
>6JX7_A Feline Infectious Peritonitis Virus Spike; CoV spike protein, VIRAL PROTEIN; HET: NAG, MAN, FUC, BMA; 3.31A {Feline infectious peritonitis virus}
Probab=100.00  E-value=2e-132  Score=1149.25  Aligned_cols=664  Identities=33%  Similarity=0.532  Sum_probs=532.7  Template_Neff=4.600

Q sp|P0DTC2|SPIK  525 CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTN-  603 (1273)
Q Consensus       525 cgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtn-  603 (1273)
                      -|-...++++.++||++|.-|.+|+|++++++..+... .+-.|...-.++.++..++++..|+||....++|+..|+. 
T Consensus       674 ~g~~d~~~i~l~~Cv~YnIYG~tG~GvI~~~~~~~~~G-l~~~s~sG~l~~Fk~~~~~~~Y~V~PC~~~~Q~vV~~~~iV  752 (1468)
T 6JX7_A          674 LGFQDISNIVKDECTDYNIYGFQGTGIIRSTTSRLVAG-LYYTSASGDLLGFKISTTGEIFTVVPCDLTAQAAVINDEIV  752 (1468)
T ss_dssp             CSCSSCCCCCBSSEEEEEETTEEEEEEEEECCCCCCSC-SEEECTTSCEEEEECSSSSCEEEEECSSCCEEEEESSSSEE
T ss_pred             ceeeccceeEeccceeEEeCCccceEEEEecCeeeeCc-EEEEcCCCCEEEEEeCCCCCEEEEEeCCcCceEEEECCeEE
Confidence            34456789999999999999999999999999888655 6667777778999999999999999999999999999875 


Q sp|P0DTC2|SPIK  604 ---TSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNS  680 (1273)
Q Consensus       604 ---tsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtqtns  680 (1273)
                         ||...+.+++.+||+++..+.+   .++.      ..+.++|-.||.+++.+...+.+|+.++|.|.|+-+.+-.  
T Consensus       753 G~ltS~n~~~~~~~~nct~v~~s~~---s~~~------~~~~~~TP~fcy~~~~~~~~~~~c~~~l~yg~~~i~~dG~--  821 (1468)
T 6JX7_A          753 GAITATNQTDLFEFVNHTWSRSARG---SSPS------TVNTYTMPQFYYITKWNNGTSSNCTSVITYSSFAICNTGE--  821 (1468)
T ss_dssp             EEEESSSCCCSSSCSCC--------------C------CCCEEECSSCEEECSCCSSSCCCCCCCBCCTTEEECTTSC--
T ss_pred             EEEEccCcccccccceeeeeeeecc---CCCC------cccceecceeEEEeeccCCccccccceeeeceEEEcCCCc--
Confidence               7788889999999999884433   1111      3455999999999999888899999999999888776621  


Q sp|P0DTC2|SPIK  681 PRRARSVASQSIIAYTMSLGAE-NS--VAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG  757 (1273)
Q Consensus       681 prrarsvasqsiiaytmslgae-ns--vaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqyg  757 (1273)
                         .+-+     -...+++... ..  ..-....|.||+||||+|++|-+.++|.|.+|||.+|+||++.+|.+||.|||
T Consensus       822 ---i~~v-----~~~~~~~~~~~~~~~~~~~t~~v~IP~nFt~~v~~EyiQ~~~~kv~idC~~YVC~~~~~C~~ll~qYg  893 (1468)
T 6JX7_A          822 ---IKYV-----NVTHVEIVDDSVGVIKPVSTGNITIPKNFTVAVQAEYVQIQVKPVAVDCAKYVCNGNRHCLNLLTQYT  893 (1468)
T ss_dssp             ---EEEC-----CCEECSSSSCSSSSCCCCCSSEEECCCCEEEEEEEEEECCCCCCEEECHHHHHSSSCHHHHTTGGGGH
T ss_pred             ---EEEE-----eceeeeeeeCccccccceeEEEEEecCCeeEEEEEEEEeccCCceEEechhhhcCCCHHHHHHHHHHh
Confidence               1111     0000111000 00  11123478999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  758 SFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-IYKTPPIKDFG-------------GFNFSQILPDPSKPSKRSFIEDLLF  823 (1273)
Q Consensus       758 sfctqlnraltgiaveqdkntqevfaqvkq-iyktppikdfg-------------gfnfsqilpdpskpskrsfiedllf  823 (1273)
                      +||..+++||.+.+ .+|......+..+.. -++++-+.+|.             ++|++.+||.+.  ++||+||||||
T Consensus       894 s~C~~I~~al~~~~-~ld~~~~~~~~~~~~~~~~~~~~~~fn~~~~~~~~~g~~~~~~~s~~l~~~~--~~RS~IEDLLF  970 (1468)
T 6JX7_A          894 SACQTIENSLNLGA-RLESLMLNDMITVSDRSLEFATVDKFNTTALGGEKLGGLYFDGLSSLLPPRV--GMRSAVEDLLF  970 (1468)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHTTTCEECHHHHTTCSTTTTTSCCSSSCCSSCTTHHHHHHHSCSSS--SSCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHH-HHHHHhHhhcceeccccccccCcccccCcccCcccccccccCCcccCCCCCC--CCCcHHHHHhc
Confidence            99999999999988 666443334444332 44555565553             267787787654  79999999999


Q sp|P0DTC2|SPIK  824 NKVTLADAGFIK-QYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQM  902 (1273)
Q Consensus       824 nkvtladagfik-qygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqm  902 (1273)
                      +||..+|.|+++ .|.+|.+...+|||+|||.+||+.||||++++||++.||++|++|....|||.    |..||||+||
T Consensus       971 ~KV~t~glg~vd~~Y~~C~~g~~i~DL~CaQ~yNGi~VLP~v~~~~~~a~YT~sl~g~m~~gg~t~----aaaiPFa~~v 1046 (1468)
T 6JX7_A          971 NKVVTSGLGTVDDDYKKCSAGTDVADLVCAQYYNGIMVLPGVVDYNKMAMYTASLIGGMALGSITS----AVAVPFSMQV 1046 (1468)
T ss_dssp             TTTTTTTCCCCCCCSTTTTTCSSSCCHHHHHHHTTEEECCCSSCHHHHHHHHHHHHHHHHCCCTTC----CCCCCHHHHH
T ss_pred             ccEEecCCCcCCHHHHHccCCccHHHHhCccccCeEEEeCCCCCHHHHHHHHHHHHHHHHhcchhh----eecccHHHHH
Confidence            999999999999 69999999999999999999999999999999999999999999999999996    6679999999


Q sp|P0DTC2|SPIK  903 AYRFNGIGVTQNVLYENQKLIANQFNSAIGKI--------------QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS  968 (1273)
Q Consensus       903 ayrfngigvtqnvlyenqklianqfnsaigki--------------qdslsstasalgklqdvvnqnaqalntlvkqlss  968 (1273)
                      .+|+|++|+||+||.||||+|||.||.|||.|              |+.++++++||.|+|||||++++||++|++||+.
T Consensus      1047 q~RlN~v~lt~~vL~~NQk~iA~sFN~A~~~it~af~~v~~ai~~t~~gf~t~~~Al~kiQ~VVN~q~~aL~~l~~qL~~ 1126 (1468)
T 6JX7_A         1047 QARLNYVALQTDVLQENQKILANAFNNAIGNITLALGKVSNAITTVSDGFNSMASALTKIQSVVNQQGEALSHLISQLQK 1126 (1468)
T ss_dssp             HHHHHTTSCCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSCSCCCCSHHHHHHHHHHHHHHHTTTHHHHHHHHHGGGSC
T ss_pred             HHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999              6668999999999999999999999999999999


Q sp|P0DTC2|SPIK  969 NFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH 1048 (1273)
Q Consensus       969 nfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyh 1048 (1273)
                      |||||||.++||.+|||++||++|+||||+|||.+|++||+|+|+|++|+|+|+.||..|+.|||..||+|.+|||.|.|
T Consensus      1127 nFgAISssi~dIy~rLd~leAdaQvDRLItGRL~aLna~vtq~l~~~~~v~~sr~LA~qKinECVksQS~R~gFCGnG~H 1206 (1468)
T 6JX7_A         1127 NFQAISSSIAEIYNRLEKVEADAQVDRLITGRLAALNAYVAQTLTQYAEVKASRQLAMEKVNECVKSQSDRYGFCGNGTH 1206 (1468)
T ss_dssp             CTTSSCSCHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTCCCCTTSSSSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1049 LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPRE--GVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN 1125 (1273)
Q Consensus      1049 lmsfpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpre--gvfvsngthwfvtqrnfyepqiittdntfvsgn 1125 (1273)
                      ++|+||.||.|++|+|.+|+|.+-++.+++|.+|+++ ++..||+  ++|+.+...|++|.|++|||..||.+|...-..
T Consensus      1207 v~S~~q~APnGi~F~H~~~~Pt~~~~v~a~~GlC~~~~~~~~~~~~~~~~~~~n~~~~~T~r~~y~Pr~~t~~d~v~~~s 1286 (1468)
T 6JX7_A         1207 LFSLVNSAPDGLLFFHTVLLPTEWEEVTAWSGICVNDTYAYLLKDFDHSIFSYNGTYMVTPRNMFQPRKPQMSDFVQITS 1286 (1468)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECCCCEEECBSCEEETTTEEEEESSSSEEEEESSSCEEEEESSSCCCBCCCGGGEEEESC
T ss_pred             eEeeeecCCCeEEEEEEEeccCceEEEEEEEEEeecCCeeEEeecCceEEEeeCCEEEEeccccccCCCCCccceEEeec
Confidence            9999999999999999999999999999999999995 7889998  999998889999999999999999999999999


Q sp|P0DTC2|SPIK 1126 CDVVIGIVNNTVYDPLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRL--------------N 1187 (1273)
Q Consensus      1126 cdvvigivnntvydplqpel----dsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrl--------------n 1187 (1273)
                      |||...-++.++..+..|++    +.|+|||++++|||++|+.++.. ..+|+++.||+.||++|              +
T Consensus      1287 C~v~y~n~~~~~~~~~~p~~~d~n~~~~~~~~~~~~n~t~~~~~~~~-~~~n~t~Lnl~~Ei~~l~~~~~~l~~~~~~~~ 1365 (1468)
T 6JX7_A         1287 CEVTFLNTTHTTFQEIVIDYIDINKTIADMLEQYHSNYTTPELDLQL-EIFNQTKLNLTAEIDQLEQRADNLTNIAHELQ 1365 (1468)
T ss_dssp             CCTTSEEECHHHHHHHSTTCCCHHHHHHHHHHHHTC--------------------------------------------
T ss_pred             CeeEEEEcccccccccccCccccCHhHHHHHHHhcCCCCCcccccCc-cccccceecHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999    99999999999999999997765 88999999999999997              9


Q sp|P0DTC2|SPIK 1188 EVAKNLNESLIDLQELGKYEQYIKWPWYI 1216 (1273)
Q Consensus      1188 evaknlneslidlqelgkyeqyikwpwyi 1216 (1273)
                      |+.|+||+++|||++|++||+||||||.-
T Consensus      1366 ~~i~~lN~s~idLe~L~~~e~YiKWPW~~ 1394 (1468)
T 6JX7_A         1366 QYIDNLNKTIVDLEWLNRIETYVKWPGSG 1394 (1468)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHhcCccHHHHceeEeEecCcccc
Confidence            99999999999999999999999999963


No 13
>5SZS_A Spike glycoprotein; coronavirus, viral fusion protein, vaccine; HET: MAN, NAG, BMA; 3.4A {Human coronavirus NL63}
Probab=100.00  E-value=7.1e-131  Score=1128.95  Aligned_cols=662  Identities=31%  Similarity=0.515  Sum_probs=529.3  Template_Neff=4.500

Q sp|P0DTC2|SPIK  505 YQPYRVVVLSFE----LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ  580 (1273)
Q Consensus       505 yqpyrvvvlsfe----llhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpq  580 (1273)
                      ++.+..|-+++.    ...+|..+.|-...+++..++||++|.-|.+|+|++++++..+...+.+ .+.+.-..++++..
T Consensus       575 ~~~~~~VYVt~s~GsrItgv~~p~~g~~d~~~i~l~~CvdYnIYG~tG~GvI~n~n~~~~~Gl~~-tS~sg~l~~fk~~~  653 (1325)
T 5SZS_A          575 YTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYDYVGTGIIRSSNQSLAGGITY-VSNSGNLLGFKNVS  653 (1325)
T ss_dssp             EEEEEEEEECCEEEEEEEECSSCCCSCSSCCBCCCSSCEEEEETTEEEEEEEEEECCCCCSCSEE-ECTTSCEEEEECTT
T ss_pred             EEEEEEEEEEecCCCeeEcccccccceeccceEEeCeeeeeEeCCccceeEEEeeceeeeCCEEE-EcCCCCEEEEEcCC
Confidence            666677777765    5556666888888999999999999999999999999999999888888 78888888999999


Q sp|P0DTC2|SPIK  581 TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG-CLIGAEHVNN-  658 (1273)
Q Consensus       581 tleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtrag-cligaehvnn-  658 (1273)
                      ++++..|+||..+.++|+..|+.   ..+.+  ..|++.-+                 ..|.|+|-.| |..++++.-+ 
T Consensus       654 ~g~~Y~V~PC~~~~Q~VV~~g~~---vGalt--s~n~~~~~-----------------fnn~~~t~~~~~~s~~~~n~t~  711 (1325)
T 5SZS_A          654 TGNIFIVTPCNQPDQVAVYQQSI---IGAMT--AVNESRYG-----------------LQNLLQLPNFYYVSNGGNNCTT  711 (1325)
T ss_dssp             SSCEEEEECSSCCEEEEEETTEE---EEEEE--SSSSCCSS-----------------CCEEEEETTEEEEESCCSCCSC
T ss_pred             CCCEEEEEeCCCCCeEEEECCce---eEEEE--ceeceecC-----------------CCcceecCCcEEEecCCcccCC
Confidence            99999999999999999998762   22222  22222111                 3467778888 7777644433 


Q sp|P0DTC2|SPIK  659 -SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVD  737 (1273)
Q Consensus       659 -syecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvd  737 (1273)
                       ..+|   .|.|||+.+......|++.   ....+        ..    -....|.||+|||++|++|-++.+|.|.+||
T Consensus       712 ~v~ty---~~~giC~dg~~~~~~~~~~---~~~~~--------~~----~~t~~i~IP~nft~~v~~EyiQ~~~~kv~iD  773 (1325)
T 5SZS_A          712 AVMTY---SNFGICADGSLIPVRPRNS---SDNGI--------SA----IITANLSIPSNWTTSVQVEYLQITSTPIVVD  773 (1325)
T ss_dssp             EEEEE---TTEEEETTSCEEECCCCBC---CCCCC--------CC----SSSEEEEEEEEEEEEEEEEEEECCCCCEEEC
T ss_pred             cchhc---ccceEeeCCCccccccccC---CCCCc--------ee----ceeeeEEccCceEEEEEEEEeeccCCCeEEe
Confidence             3455   8999999998775555321   11111        00    1112799999999999999999999999999


Q sp|P0DTC2|SPIK  738 CTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVK---QIYKTPPIKDFGGFNFSQILPDPSKP--  812 (1273)
Q Consensus       738 ctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvk---qiyktppikdfggfnfsqilpdpskp--  812 (1273)
                      |.+|+||++.+|.+||.|||+||..+++||.+.+..++.   |++..++   +.+..+.+..|++|||+.+||.+..+  
T Consensus       774 C~~YVC~~~~~C~~ll~qYgs~C~~I~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~n~s~~l~~~~~~~~  850 (1325)
T 5SZS_A          774 CATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETN---DVSSMLTFDSNAFSLANVTSFGDYNLSSVLPQRNIRSS  850 (1325)
T ss_dssp             TTTTTSTTCTTHHHHGGGGHHHHHHHHHHHHHHHHHHHH---HHHHHCCBCHHHHHHTCGGGTGGGCCTTTSCCSCCSSS
T ss_pred             chhhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH---HHHhhhccCCcccccccccccCCCcchhccCCCCCCCc
Confidence            999999999999999999999999999999999988754   4444444   34455678999999999999998754  


Q sp|P0DTC2|SPIK  813 --SKRSFIEDLLFNKVTLADAGFIK-QYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG  889 (1273)
Q Consensus       813 --skrsfiedllfnkvtladagfik-qygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfg  889 (1273)
                        +.||+||||||+||..+|.|+++ .|..|.+...+|||+|||.+||+.||||++++||+|.||++|++|....|||. 
T Consensus       851 ~~~~RS~IEDLLF~KV~t~glg~vd~~Y~~C~~g~~i~DL~CaQ~yNGi~VLP~v~~~~~~a~YT~sl~g~m~~gg~ta-  929 (1325)
T 5SZS_A          851 RIAGRSALEDLLFSKVVTSGLGTVDVDYKSCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLTS-  929 (1325)
T ss_dssp             CSCCCCHHHHHHHHHHC-------CCCGGGGGSCSSCCCHHHHHHTTTEEECCCSSCHHHHHHHHHHHHHTTTCCSBST-
T ss_pred             ccCcccHHHHHHCCceeecCCCccchhhHHccCCccHHHHhcccccCeEEEeCCCCCHHHHHHHHHHHHHHHHhhchHH-
Confidence              89999999999999999999997 99999999999999999999999999999999999999999999999999997 


Q sp|P0DTC2|SPIK  890 AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       890 agaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqds--------------lsstasalgklqdvvnqn  955 (1273)
                         |..||||+||.+|+||+|+||+||.||||+|||.||.|||.||..              ++++|+||.|+|||||++
T Consensus       930 ---aaaiPFa~~vq~RlN~v~lt~~VL~~NQk~iA~sFN~A~~~i~~~f~~vn~ai~qts~~~~tv~~Al~kiQ~VVN~q 1006 (1325)
T 5SZS_A          930 ---AAAIPFSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQQ 1006 (1325)
T ss_dssp             ---TCCCCHHHHHHHHHHTTSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHC--------CTHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhChHHHHHHHHhhHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               556899999999999999999999999999999999999999988              445669999999999999


Q sp|P0DTC2|SPIK  956 AQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG 1035 (1273)
Q Consensus       956 aqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg 1035 (1273)
                      ++||++|++||+.|||||||.++||.+|||++||++|+||||+|||.+|++||+|+|.|++|+|+|+.||..|+.|||..
T Consensus      1007 ~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAdaQvDRLItGRL~aLna~vtq~l~~~~~v~~sr~LA~qKinECVks 1086 (1325)
T 5SZS_A         1007 GSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAALNAFVSQVLNKYTEVRGSRRLAQQKINECVKS 1086 (1325)
T ss_dssp             HHHHHHHHHGGGCCCSSSCSCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1036 QSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVS--NGTHWFVTQRNFYEP 1112 (1273)
Q Consensus      1036 qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvfvs--ngthwfvtqrnfyep 1112 (1273)
                      ||+|.+|||.|.|++|+||.||+|++|+|.+|+|.+-++.+++|.+|+++ ++..||++.|+-  +...|++|.|++|||
T Consensus      1087 QS~R~gFCGnG~Hi~S~~q~APnGi~F~H~~~~Pt~~~~v~a~~GlC~~~~~~~~~~~~~~v~~~~n~~~~~T~r~~y~P 1166 (1325)
T 5SZS_A         1087 QSNRYGFCGNGTHIFSIVNSAPDGLLFLHTVLLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLYSDNGVFRVTSRVMFQP 1166 (1325)
T ss_dssp             CCCCTTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEESCEEETTTEEEEESSTTEEEEEETTEEEEEESSSCCC
T ss_pred             cCcCcCCCCCCeeeEEeeecCCCeEEEEEEeecccceeEEEEEEEEeecCCeeEEecCCCeEEEecCCEEEEeccccccC
Confidence            99999999999999999999999999999999999999999999999995 789999996655  777999999999999


Q sp|P0DTC2|SPIK 1113 QIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPD-VDLGDISGINASVVNIQKEIDR------ 1185 (1273)
Q Consensus      1113 qiittdntfvsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspd-vdlgdisginasvvniqkeidr------ 1185 (1273)
                      ..||.++...-..|||...-++.++..+..|+.-.|++||+|+||++++.. .|+ ++..+|+.+.|+..||++      
T Consensus      1167 r~~t~~d~v~~~sc~v~y~n~~~~~~~~~~p~~~d~~~el~~~~~~~~~~~~p~~-~~~~~n~t~lnl~~ei~~L~~~~~ 1245 (1325)
T 5SZS_A         1167 RLPVLSDFVQIYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVKPNF-DLTPFNLTYLNLSSELKQLEAKTA 1245 (1325)
T ss_dssp             BCCCGGGEEECSCCCSSSEEECTTGGGGTSTTCCCHHHHHHHC-------------------------------------
T ss_pred             cCCCccceEEeeccceEEEEccceecCCCCCCCCChHHHHHHHHHcCCCCCCCCC-CcccccceecchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999987655 455 378899999999999999      


Q sp|P0DTC2|SPIK 1186 --------LNEVAKNLNESLIDLQELGKYEQYIKWPWY 1215 (1273)
Q Consensus      1186 --------lnevaknlneslidlqelgkyeqyikwpwy 1215 (1273)
                              |+++.|+||+++|||++|++||+||||---
T Consensus      1246 ~l~~~~~~l~~~i~~lN~s~idLe~L~~~e~YiKW~~~ 1283 (1325)
T 5SZS_A         1246 SLFQTTVELQGLIDQINSTYVDLKLLNRFENLIKRMKQ 1283 (1325)
T ss_dssp             --------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHhcHHHHHHHHHHH
Confidence                    999999999999999999999999999643


No 14
>6IXB_B Spike glycoprotein; Alphacoronavirus, spike glycoprotein, STRUCTURAL PROTEIN; HET: MAN, NAG, BMA;{Human coronavirus 229E}
Probab=100.00  E-value=8.3e-129  Score=1101.71  Aligned_cols=647  Identities=34%  Similarity=0.594  Sum_probs=512.2  Template_Neff=4.700

Q sp|P0DTC2|SPIK  518 LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSV  597 (1273)
Q Consensus       518 lhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsv  597 (1273)
                      ..+|..+.|-...++++.++||++|.-|.+|+|++++++..+...+.+ .|...-.++.++..++++..|+||....++|
T Consensus       426 ~gv~~p~~~~~d~~~i~l~~Cv~YnIYG~tG~GvI~~~n~~~~~gl~~-~s~sG~l~~Fk~~~~g~~Y~V~PC~~~~q~V  504 (1116)
T 6IXB_B          426 TGVPQPVEGVSSFMNVTLDKCTKYNIYDVSGVGVIRVSNDTFLNGITY-TSTSGNLLGFKDVTKGTIYSITPCNPPDQLV  504 (1116)
T ss_dssp             EECSSSCCCSCCCCCCCCSSCEEEEETTEEEEEEEEEECCCCCSCSEE-ECSSSCEEEEECTTTSCEEEEEESSCCEEEE
T ss_pred             EeecccccccccceeEEeCeeeeeEecCccceEEEEeeCceeeCcEEE-EeCCCCEEEEEcCCCCcEEEEeeCCCCCeEE
Confidence            345555788888999999999999999999999999999999877777 7888888999999999999999999999999


Q sp|P0DTC2|SPIK  598 ITPGTNTSNQVAVLYQDVNCTEVPV-AIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIP----IGAGICA  672 (1273)
Q Consensus       598 itpgtntsnqvavlyqdvnctevpv-aihadqltptwrvystgsnvfqtragcligaehvnnsyecdip----igagica  672 (1273)
                      +..|   +...+.++.... .+... .+    .+|.+         +++.    +|      ...|.-|    .|.|||+
T Consensus       505 V~~~---~~vgalts~n~~-~~~~~~~~----~~~~~---------~~~~----~~------~~n~~~~~~~~~~~giC~  557 (1116)
T 6IXB_B          505 VYQQ---AVVGAMLSENFT-SYGFSNVV----ELPKF---------FYAS----NG------TYNCTDAVLTYSSFGVCA  557 (1116)
T ss_dssp             ECSS---SEEEEECSSCCC-CSSSSCCC----CCSSS---------CCBC----CS------CCCCCCEEEEETTEEEET
T ss_pred             EeCC---ceEEEEEccccc-cccccceE----Eecee---------eecc----CC------ccccccceeeeceeeEee
Confidence            9988   345566676655 22211 11    12322         1211    23      3333334    4899999


Q sp|P0DTC2|SPIK  673 SYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752 (1273)
Q Consensus       673 syqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnl  752 (1273)
                      .+....-.||   .+...++            +.-....|.||+|||++|++|-+..+|.|.+|||.+|+||++.+|.+|
T Consensus       558 ~g~~~~~~~~---~~~~~~~------------~~~~t~~v~IP~nft~~v~~Eyiq~~~~kv~idC~~YVC~~~~~C~~l  622 (1116)
T 6IXB_B          558 DGSIIAVQPR---NVSYDSV------------SAIVTANLSIPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVEL  622 (1116)
T ss_dssp             TSCEECCCCC---BCCCCCC------------CCSCCEEEEEECCCCCCCEEEEEECCCCCEEECHCCCCCSSCHHHHHH
T ss_pred             CCCeeeecce---eccCCCC------------ccccceeEEccCCeeeeeEEEEeeccCCCeEEechhhccCCCHHHHHH
Confidence            8876533332   2211111            111122599999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSK----PSKRSFIEDLLFNKVTL  828 (1273)
Q Consensus       753 llqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpsk----pskrsfiedllfnkvtl  828 (1273)
                      |.|||+||..+++||.+.+..+|....+++...++-++.+.+..|++||||.+||.+..    ++.||+||||||+||..
T Consensus       623 l~qYgs~C~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~s~~l~~~~~~~~~~~~RS~iEDlLF~KV~t  702 (1116)
T 6IXB_B          623 LKQYTSACKTIEDALRNSAMLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPRSGSRVAGRSAIEDILFSKLVT  702 (1116)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHTTCGGGGGGGCCTTTSCCCCSSCCC----CHHHHHHHHTCCC
T ss_pred             HHHhhhHHHHHHHHHHHHHhhhcHHHHHHHhcCccccccccccccCCccccccccCCCCCCCccccccHHHHHHccceee
Confidence            99999999999999999999999999999999999999999999999999999998753    35799999999999999


Q sp|P0DTC2|SPIK  829 ADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFN  907 (1273)
Q Consensus       829 adagfikq-ygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfn  907 (1273)
                      +|.|++++ |.+|.+....|||+|||.+||+.||||.+++||++.||++|++|....|||.    |..||||+||.+|+|
T Consensus       703 ~glg~vd~dY~~C~~g~~i~DL~CaQ~ynGi~VLP~v~~~~~~a~YT~sl~g~m~~gg~t~----aaaiPFa~~vq~RlN  778 (1116)
T 6IXB_B          703 SGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGIALGGLTS----AASIPFSLAIQSRLN  778 (1116)
T ss_dssp             ------CCCGGGTSSSSSCCCHHHHHHHTTEEECCCTTCHHHHHHHHHHHHHHHSCCSCSS----SSCCCGGGHHHHHHH
T ss_pred             cCCCcccHHHHHhcCCccHHHHhcccccCeEEEeCCCCCHHHHHHHHHHHHHHHHhhchhH----hhhChHHHHHHHHhh
Confidence            99999988 9999999999999999999999999999999999999999999999999997    556899999999999


Q sp|P0DTC2|SPIK  908 GIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAI  973 (1273)
Q Consensus       908 gigvtqnvlyenqklianqfnsaigkiqds--------------lsstasalgklqdvvnqnaqalntlvkqlssnfgai  973 (1273)
                      |+|+||+||.||||+||+.||.|||.||+.              ++++|+||.|+|||||++++||++|++||+.|||||
T Consensus       779 ~~~l~~~vL~~NQ~~iA~sFN~A~~~i~~~f~~~n~ai~qts~~~~t~~~Al~kiQ~VVN~~~~aL~~l~~qL~~nFgAI  858 (1116)
T 6IXB_B          779 YVALQTDVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAI  858 (1116)
T ss_dssp             HHSCCCCSCCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSS
T ss_pred             hhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987              455669999999999999999999999999999999


Q sp|P0DTC2|SPIK  974 SSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFP 1053 (1273)
Q Consensus       974 ssvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfp 1053 (1273)
                      ||.++||.+|||++||++|+||||+|||.+|.+||+|+|.|++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+|
T Consensus       859 Sssi~dIy~rLd~leAdaQvDRLItGRL~aLna~vtq~l~~~~~v~~sr~lA~qKinECVksQS~R~gFCGnG~Hv~S~~  938 (1116)
T 6IXB_B          859 SSSIQAIYDRLDIIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQSKRYGFCGNGTHIFSLV  938 (1116)
T ss_dssp             CSCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTSCCSCTTTSSSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCeeEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1054 QSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGV--FVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVI 1130 (1273)
Q Consensus      1054 qsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregv--fvsngthwfvtqrnfyepqiittdntfvsgncdvvi 1130 (1273)
                      |.||.|++|+|.+|+|.+-++.+++|.+|+++ ++..||++.  |+.++.+|++|.|++|||..||..|...-..|||..
T Consensus       939 q~AP~Gi~F~H~~~~P~~~~~v~a~~GlC~~~~~~~~~~~~~~~~~~~~~~~~~T~r~~y~Pr~~t~~d~v~~~~c~v~y 1018 (1116)
T 6IXB_B          939 NAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGRNGYVLRQPNLALYKEGNYYRITSRIMFEPRIPTIADFVQIENCNVTF 1018 (1116)
T ss_dssp             EEETTEEEEEEEEECCSSEEEEEECSCCCCSSSCCCCCSSTTBCCBCSSSSCBCCBSSCCCCCCCCGGGCCCCCCCCTTS
T ss_pred             ecCCCeEEEEEEeeccceeEEEEEEEEEeecCCceEEecCCceEeEeeCCEEEEeccccccCCCCCccceEEeecCceeE
Confidence            99999999999999999999999999999995 789999887  888888999999999999999999999999999999


Q sp|P0DTC2|SPIK 1131 GIVNNTVYDPLQPELDSFKEELDKY-FKN--HTSPDVDLGDISGINASVVNIQKEIDR--------------LNEVAKNL 1193 (1273)
Q Consensus      1131 givnntvydplqpeldsfkeeldky-fkn--htspdvdlgdisginasvvniqkeidr--------------lnevaknl 1193 (1273)
                      .-++.++..+..|+.-.|++||+|+ +|+  |+-||.+   +..+|+.+.|+..||++              |+|+.|+|
T Consensus      1019 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~p~~~---~~~~n~t~lnl~~ei~~L~~~~~~l~~~~~~l~~~i~~l 1095 (1116)
T 6IXB_B         1019 VNISRSELQTIVPEYIDVNKTLQELSYKLPNYTVPDLV---VEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNI 1095 (1116)
T ss_dssp             CCCCTTTHHHHSCCC-----------------------------------------------------------------
T ss_pred             EEcchhhcCCCCCCCCChHHHHHHHHhhCCCCCCCCCc---HHhccceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 664  4556554   77899999999999999              99999999


Q sp|P0DTC2|SPIK 1194 NESLIDLQELGKYEQYIKWPW 1214 (1273)
Q Consensus      1194 neslidlqelgkyeqyikwpw 1214 (1273)
                      |+++|||++|++||+||||||
T Consensus      1096 N~s~idLe~L~~~e~YiKWPW 1116 (1116)
T 6IXB_B         1096 NSTLVDLKWLNRVETYIKWPW 1116 (1116)
T ss_dssp             ---------------------
T ss_pred             HhcCccHHHhCeEEEEecCCC
Confidence            999999999999999999999


No 15
>6CV0_A Spike protein; infectious bronchitis coronavirus, spike, pre-fusion; HET: NAG;{Infectious bronchitis virus}
Probab=100.00  E-value=2.9e-125  Score=1068.92  Aligned_cols=651  Identities=31%  Similarity=0.547  Sum_probs=514.4  Template_Neff=4.200

Q sp|P0DTC2|SPIK  524 VCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNK------KFLPFQQFGRDIADTTDAV--RDPQTLEILDITPCSFGGV  595 (1273)
Q Consensus       524 vcgpkkstnlvknkcvnfnfngltgtgvltesnk------kflpfqqfgrdiadttdav--rdpqtleilditpcsfggv  595 (1273)
                      +.|....++++.++||++|.-|.+|+|++++.+.      -....+.+-.|.....|..  ++..++++..|+||....+
T Consensus       399 v~g~~d~snI~ld~CvdYNIYG~tG~GvItnvt~s~~~~~yl~~~Gl~ildtSg~idlf~~Kn~~~g~~Y~V~PC~~V~~  478 (1105)
T 6CV0_A          399 VITRHNYNNITLNTCVDYNIYGRTGQGFITNVTDSAVSYNYLADAGLAILDTSGSIDIFVVQGEYGLTYYKVNPCEDVNQ  478 (1105)
T ss_dssp             SCCSCCSCCCCCSSCEEEEETTEEEEEEEEECTTTTTTTTCSCSSCCCEECGGGCEEEEEECSSSSCEEEEEEECTTSSE
T ss_pred             cccccccceeEeCeeeeEEecCceeeEEEEecCCccccceeeccCCeEEEeCCCCceEEEEEcCCCCcEEEEEeCccCce
Confidence            6777888999999999999999999999999655      3334444444444445544  4478999999999999999


Q sp|P0DTC2|SPIK  596 SVITPGTNTSNQVAVL-YQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN--SYECDIPIGAGICA  672 (1273)
Q Consensus       596 svitpgtntsnqvavl-yqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnn--syecdipigagica  672 (1273)
                      +++..|.   +-|++| +....|.++..-..                .+++-.|| +++...+.  ..+|+++.|.++|.
T Consensus       479 Q~VV~~~---~iVG~LTs~n~t~s~~~~n~~----------------~i~~~~g~-~~~~~s~~~~~~~c~~~~y~~~ci  538 (1105)
T 6CV0_A          479 QFVVSGG---KLVGILTSRNETGSQLLENQF----------------YIKITNGT-RRFRRSITENVANCPYVSYGKFCI  538 (1105)
T ss_dssp             EEEEETT---EEEEEEESSCSSCSEECSSSE----------------ECCCCCSS-SCCCCCCCCCBSCCCSCBCSSEEE
T ss_pred             eEEEECC---EEEEEEEEeCCCcccceeceE----------------EEEeeCCc-ceeeecccCccccCcceeecceEE
Confidence            9998887   788888 88888877543111                26777888 77665543  68899999999998


Q sp|P0DTC2|SPIK  673 SYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL  752 (1273)
Q Consensus       673 syqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnl  752 (1273)
                      -+...    ++.  +..+.+..|.+-      +.-+...|.||+|||++|++|-+..+|.|.+|||.+|+||++.+|.+|
T Consensus       539 ~~~g~----~~~--~~~~~l~~~~~p------~~~~~~~v~IP~nFtl~v~~EyiQt~~~kV~IDC~~YVC~~~~~C~~l  606 (1105)
T 6CV0_A          539 KPDGS----IAT--IVPKQLEQFVAP------LLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLDCRDL  606 (1105)
T ss_dssp             CSSSC----EEE--BCCCCCCCCCCC------CCCSSCCEEEESSCCCCEEEEEEECCCCEEEECHHHHHSCSCSSSHHH
T ss_pred             cCCCC----eee--eccceeeecccc------cceeeeEEEccCceeEeEEEEEEeecCCceEEEchhhccCCCHHHHHH
Confidence            77651    111  111222223222      122566799999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  753 LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVTLA  829 (1273)
Q Consensus       753 llqygsfctqlnraltgiaveqdkntqevfaqvkqi-yktppikdf--ggfnfsqilpdpskpskrsfiedllfnkvtla  829 (1273)
                      |.|||+||..+++||.+.+..+|.+..+++...|.- +++|-+..|  |+||||.+||.|++|++||+||||||+||..+
T Consensus       607 l~qYgs~C~~I~~al~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fN~s~ll~~~~~~~~RS~IEDLLF~KV~t~  686 (1105)
T 6CV0_A          607 FQQYGPVCDNILSVVNSIGQKEDMELLNFYSSTKPAGFNTPFLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVESV  686 (1105)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCCSCSCCSSCCCTTTSCCSSCSSSCCSHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCCccccccccccCCCCcceeeecCCCCCcCcccHHHHHhcCceeec
Confidence            999999999999999999999999999999999766 677777645  78999999999999999999999999999999


Q sp|P0DTC2|SPIK  830 DAGFIKQYGDCLGDI--AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFN  907 (1273)
Q Consensus       830 dagfikqygdclgdi--aardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfn  907 (1273)
                      |.|+-+.|..|.+..  .+|||+|||.+||+.||||++++||++.||++|++|....|||.    |..|||||||.+|+|
T Consensus       687 glg~d~~Y~~Ct~g~~~~i~DL~CAQyyNGimVLP~v~d~~~~amYTasL~g~m~~gg~ta----a~aiPFa~~vq~RlN  762 (1105)
T 6CV0_A          687 GLPTDDAYKNCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITA----AGAIPFATQLQARIN  762 (1105)
T ss_dssp             ------CCCCTTSCCCCSSGGGHHHHHTTTEEEECCSSCTTSSTTHHHHHHHHHHHSSSCS----CSSCSSHHHHHHHHT
T ss_pred             CCCCcHHHHhccCCCCccHHHHhchhhcCcEEeeCCCCCHHHHHHHHHHHHHHHHhcchhH----hhhCcHHHHHHHHhc
Confidence            999999999999996  79999999999999999999999999999999999999999994    667999999999999


Q sp|P0DTC2|SPIK  908 GIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV  987 (1273)
Q Consensus       908 gigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkv  987 (1273)
                      ++|+||+||.||||+||+.||.|||.||+.+.++++||.|+|||||++++||++|++||+.|||||||.++||.+|||++
T Consensus       763 ~v~l~~~vL~~NQk~iA~sFN~A~~~i~~~f~~~~~Al~kiQ~VVN~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~l  842 (1105)
T 6CV0_A          763 HLGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLALQQIQHVVNKQNAILTETMASLNKNFGAISSLIQEIYQQLDAI  842 (1105)
T ss_dssp             TTTTCSCCCSSSSHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTTTTTSSSCCSSSCSCSTTTTTTSCHH
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  988 EAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTY 1067 (1273)
Q Consensus       988 eaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvty 1067 (1273)
                      ||++|+||||||||.+|++||+|.+.+.+|.||++.||..|+.|||..||+|.+|||.|.|++|+||.||+|++|+|.+|
T Consensus       843 eAdaQvDRLItGRL~aLna~vt~~~~~~~~v~~sr~LA~qKiNECVksQS~R~gFCGnG~Hv~S~~q~AP~Gi~F~H~~~  922 (1105)
T 6CV0_A          843 QANAQVDRLITGRLSSLSVLASAKQAEHIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFSY  922 (1105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTCCCCTTSSSSSSCCCEEEEECSSEEEEEEECC
T ss_pred             HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCCCCeEEEeeeeccCCeEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1068 VPAQEKNFTTAPAICHDG-----KAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 (1273)
Q Consensus      1068 vpaqeknfttapaichdg-----kahfpr--egvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp 1140 (1273)
                      +|.+-++.+++|.+|.++     .+..|+  .|+|+.+...|++|.|++|||..||.+|...-..|||...-+|+++..|
T Consensus       923 ~P~~~~~v~a~~G~C~~~~~~~~~~~~~~~~~g~~~~~n~~~~~T~r~~y~Pr~~t~~d~v~i~sC~v~y~~~~~~~l~~ 1002 (1105)
T 6CV0_A          923 TPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAGDIVTLTSCQANYVSVNKTVITT 1002 (1105)
T ss_dssp             CCCCEEEECBCCCBCCCCSSSCCCEECCCTTSCCEEEETTEEEECCSSSCCCBCCCTTSCCEESCCCSSSCCCSSCCCCC
T ss_pred             ccCceeEEEEEEEEEecCcccccEEEEecCCCcEEEEECCEEEEeccccccCCCCCcccEEEeecCcceEEeCCcccccC
Confidence            999999999999999997     588888  8999999899999999999999999999999999999999999999998


Q sp|P0DTC2|SPIK 1141 -LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELG-KYEQYIKW 1212 (1273)
Q Consensus      1141 -lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelg-kyeqyikw 1212 (1273)
                       ..|+.-.|+|||+|+|+++++.-.|+. +-.+|.++.|++.||++|+|+.|+||+| +||+||. |.|.|..-
T Consensus      1003 ~~~pd~~Dfn~el~~~~~~~~~~~p~~~-~~n~n~t~LnLt~Ei~~l~~~i~~lN~s-~dLe~L~~~~~~~~~~ 1074 (1105)
T 6CV0_A         1003 FVDNDDFDFNDELSKWWNDTKHELPDFD-KFNYTVPILDIDSEIDRIQGVIQGLNDS-VDIKQIEDKIEEILSK 1074 (1105)
T ss_dssp             CC------------------------------------------------------------------------
T ss_pred             CCCcCCCChHHHHHHHHhcCCCCCCCcc-ccccccceechHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence             579999999999999999976445563 3478889999999999999999999999 6999998 77877654


No 16
>6VV5_C Spike glycoprotein; glycoprotein, surface, receptor-binding, membrane fusion; HET: MAN, PAM, BMA, NAG;{Porcine epidemic diarrhea virus}
Probab=100.00  E-value=1.7e-124  Score=1078.65  Aligned_cols=641  Identities=32%  Similarity=0.536  Sum_probs=513.8  Template_Neff=4.600

Q sp|P0DTC2|SPIK  521 PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600 (1273)
Q Consensus       521 patvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp  600 (1273)
                      |..+.|-....+++.++||++|.-|.+|+|++++++..++..+. -.+.+.-.++.|+..++++..|+||....++|+..
T Consensus       614 ~~pv~g~~d~s~i~l~~Cv~YnIYG~tG~GvI~~t~~~~~~g~~-y~s~~G~l~~Fk~~~~~~~Y~V~PC~~~~Q~vV~~  692 (1356)
T 6VV5_C          614 PKPFEGVTDVSFMTLDVCTKYTIYGFKGEGIITLTNSSFLAGVY-YTSDSGQLLAFKNVTSGAVYSVTPCSFSEQAAYVD  692 (1356)
T ss_dssp             SSCCSSCSCCCBCCCSSEEEEEETTEEEEEEEEECSCCCSSCSE-EECTTSCEEEEECTTTCCEEEEECSSCEEEEEEET
T ss_pred             cCCcccccccceeeeCeeeeeEeCCceeeEEEEEcCceecCceE-EEcCCCCEEEEEcCCCCCEEEEEecccCceEEEEC
Confidence            44466777788999999999999999999999999988876666 57777788899999999999999999999999987


Q sp|P0DTC2|SPIK  601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQT  676 (1273)
Q Consensus       601 gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipi----gagicasyqt  676 (1273)
                      |+    -|+++-. .|++.                    -+-+++-.||   +.|.+...+|+.|+    |.|||+.+..
T Consensus       693 g~----~Vg~lts-~n~~~--------------------~~~~~~~~~~---~~~~~~~~~c~~p~ltYg~~~ic~~g~~  744 (1356)
T 6VV5_C          693 DD----IVGVISS-LSSST--------------------FNSTRELPGF---FYHSNDGSNCTEPVLVYSNIGVCKSGSI  744 (1356)
T ss_dssp             TE----EEEEEES-CSCCS--------------------SSEEEEETTE---EEEESCCSCCSSEEEEETTEEEETTCCE
T ss_pred             CE----EEEEEEe-ecCCC--------------------CCceeecCce---eEecCCCccccceeEEeccceeecCCce
Confidence            76    4555332 23321                    1224555577   56667789999999    9999998776


Q sp|P0DTC2|SPIK  677 QTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756 (1273)
Q Consensus       677 qtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqy  756 (1273)
                      -...+ +..             ....  +.-....|.||+|||++|++|-+..+|.|.+|||.+|+||++.+|.+||.||
T Consensus       745 ~~~~~-~~~-------------~~~~--~~~~~~~v~IP~nft~~v~~Eyiq~~~~kv~idC~~YVC~~~~~C~~ll~qY  808 (1356)
T 6VV5_C          745 GYVPS-QSG-------------QVKI--APTVTGNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQY  808 (1356)
T ss_dssp             EECCC-CCC-------------CCCC--CCCSSEEEEEEESCEEEEEEEEEECCCCCEEECHHHHHSSSCHHHHHHHGGG
T ss_pred             eeecC-ccC-------------CCCC--CcccceEEEecCCeEEEEEEEEEeecCCCeEEechhhccCCCHHHHHHHHHh
Confidence            43222 110             0000  1122237899999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  757 GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPS-------KPSKRSFIEDLLFNKVT  827 (1273)
Q Consensus       757 gsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdf--ggfnfsqilpdps-------kpskrsfiedllfnkvt  827 (1273)
                      |+||..+++||.+.+..+|-.......-..+.++.+-+..|  |+|||+.+||.+.       ++++||+||||||+||.
T Consensus       809 gs~C~~I~~al~~~~~~e~~e~~~~~~~~~~~~~~~~~s~~~~~~~n~s~~l~~~~~~~~~~~~~~~RS~IEDLLF~KV~  888 (1356)
T 6VV5_C          809 TAACKTIESALQLSARLESVEVNSMLTISDEALQLATISSFNGDGYNFTNVLGVSVYDPASGRVVQKRSFIEDLLFNKVV  888 (1356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTCSTTTSCCSSCCCTTTSCEEC--------CEECCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHhHhhCHHHHhhceeecccCCCcceeeecccccCCCCCCCccCCcCHHHHHhccceE
Confidence            99999999999999999855444444444556666666666  7899999999874       33789999999999999


Q sp|P0DTC2|SPIK  828 LADAGFI-KQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF  906 (1273)
Q Consensus       828 ladagfi-kqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrf  906 (1273)
                      .+|.|++ +.|.+|.+...+|||+|||.+||+.||||++++||++.||++|++|....|||.    |..||||+||.+|+
T Consensus       889 t~glg~vD~~Y~~C~~g~~i~DL~CaQ~yNGi~VLP~v~~~~~~a~YT~sl~g~m~~gg~t~----aaaiPFa~~vq~Rl  964 (1356)
T 6VV5_C          889 TNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVDAEKLHMYSASLIGGMVLGGFTS----AAALPFSYAVQARL  964 (1356)
T ss_dssp             -------CCCCTTTTSCSSCCCHHHHHHHTTEEECCCSSCHHHHHHHHHHHHHGGGCCSSSC----SSCCCHHHHHHHHH
T ss_pred             ecCCCCcchhHHHhcCCccHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHHHHHhcchhh----hhhChHHHHHHHHh
Confidence            9999999 999999999999999999999999999999999999999999999999999997    44799999999999


Q sp|P0DTC2|SPIK  907 NGIGVTQNVLYENQKLIANQFNSAIGKIQDSL--------------SSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA  972 (1273)
Q Consensus       907 ngigvtqnvlyenqklianqfnsaigkiqdsl--------------sstasalgklqdvvnqnaqalntlvkqlssnfga  972 (1273)
                      |++|+||+||.||||+||+.||.|||.||+.+              +++++||.|+|||||++++||++|++||+.||||
T Consensus       965 N~~~lt~~vL~~NQk~iA~sFN~A~~~i~~~f~~v~~ai~qts~~~~t~~~Al~kiQ~VVN~q~~aL~~l~~qL~~nFgA 1044 (1356)
T 6VV5_C          965 NYLALQTDVLQRNQQLLAESFNSAIGNITSAFESVKEAISQTSKGLNTVAHALTKVQEVVNSQGAALTQLTVQLQHNFQA 1044 (1356)
T ss_dssp             HHHSCCCCCSSHHHHHHHHHHHHHHHHHHHHTTTGGGSCCTTTTSTTSHHHHHHHHHHHHHTTTTTHHHHHHGGGCCCSS
T ss_pred             hhhHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999886              8899999999999999999999999999999999


Q sp|P0DTC2|SPIK  973 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG-KGYHLMS 1051 (1273)
Q Consensus       973 issvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcg-kgyhlms 1051 (1273)
                      |||.++||.+|||++||++|+||||+|||.+|.+||+|+|.|++|+|+|+.||..|+.|||..||+|.+||| .|.|++|
T Consensus      1045 ISssi~dIy~rLd~leAdaQvDRLItGRL~aLna~vsq~l~~~~~v~~sr~LA~qKinECVksQS~R~gFCGnnG~Hi~S 1124 (1356)
T 6VV5_C         1045 ISSSIDDIYSRLDILSADAQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYGFCGGDGEHIFS 1124 (1356)
T ss_dssp             SCSCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTSSSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 7999999


Q sp|P0DTC2|SPIK 1052 FPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVS--N----G--THWFVTQRNFYEPQIITTDNTFV 1122 (1273)
Q Consensus      1052 fpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvfvs--n----g--thwfvtqrnfyepqiittdntfv 1122 (1273)
                      +||.||.|++|+|.+|+|.+-++.+++|.+|.++ ++..||++.|+-  +    +  ..|++|.|++|||..||..+...
T Consensus      1125 ~~q~APnGi~F~H~~~~P~~~~~v~a~~G~C~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~T~r~~y~Pr~~t~~d~v~ 1204 (1356)
T 6VV5_C         1125 LVQAAPQGLLFLHTVLVPSDFVDVIAIAGLCVNDEIALTLREPGLVLFTHELQNHTATEYFVSSRRMFEPRKPTVSDFVQ 1204 (1356)
T ss_dssp             EEEEETTEEEEEEEEEECSEEEEEEECCCEEETTTEEEEESCTTEEEESCC-------CCEEEETTSCCCBCCCGGGEEE
T ss_pred             eccccCceEEEEEEeecccceeEEEEEEEEEeCCCceEEecCCceEEEeecccCCCCCeEEEeccccccCCCCCccceEE
Confidence            9999999999999999999999999999999995 789999988766  3    1  58999999999999999999999


Q sp|P0DTC2|SPIK 1123 SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHT---SPDVDLGDISGINASVVNIQKEIDRL------------- 1186 (1273)
Q Consensus      1123 sgncdvvigivnntvydplqpeldsfkeeldkyfknht---spdvdlgdisginasvvniqkeidrl------------- 1186 (1273)
                      -..|||...-++.++..+..|++..|++||+|+||+++   -||.++   ..+|+.+.|++.||++|             
T Consensus      1205 ~~sC~v~y~n~~~~~~~~~~p~~~df~~el~~~~~~~~~~~~p~~~~---~~~n~t~Lnl~~ei~~l~~~~~~l~~~~~~ 1281 (1356)
T 6VV5_C         1205 IESCVVTYVNLTRDQLPDVIPDYIDVNKTLDEILASLPNRTGPSLPL---DVFNATYLNLTGEIADLEQRSESLRNTTEE 1281 (1356)
T ss_dssp             ESCCCTTSEEECTTTGGGTSTTCCCHHHHHHC------------------------------------------------
T ss_pred             eecCeeEEEEcccccCCCCCCCCCChHHHHHHHHHcCCCCCCCCCCh---hcceeeeechHHHHHHHHHHHHHHhchHHH
Confidence            99999999999999999999999999999999999884   455544   47999999999999997             


Q sp|P0DTC2|SPIK 1187 -NEVAKNLNESLIDLQELGKYEQYIKWP 1213 (1273)
Q Consensus      1187 -nevaknlneslidlqelgkyeqyikwp 1213 (1273)
                       +|+.|+||+++|||++|++||.+-+|+
T Consensus      1282 l~~~i~~lN~s~idLe~Ln~~etla~~~ 1309 (1356)
T 6VV5_C         1282 LQSLIYNINNTLVDLEWLNRVETGSGYI 1309 (1356)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHhccCHHHHcceeecccCC
Confidence             899999999999999999999987765


No 17
>6M3W_B Spike glycoprotein,Spike glycoprotein; spike, post-fusion, SARS-CoV, coronavirus, glycoprotein; HET: NAG;{Human SARS coronavirus}
Probab=100.00  E-value=1.8e-124  Score=1000.40  Aligned_cols=491  Identities=90%  Similarity=1.349  Sum_probs=338.6  Template_Neff=3.600

Q sp|P0DTC2|SPIK  706 AYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQV  785 (1273)
Q Consensus       706 aysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqv  785 (1273)
                      |++...|.||+|||++|++|-+.++|.|.+|||.+|+||++.+|.+||.|||+||..+++||.+.+..+|....+++...
T Consensus         1 ~~~~~~i~IP~nFtl~v~~EyiQ~~~~kV~IDC~~YVC~~~~rC~~LL~QYgs~C~~I~~aL~~~~~led~~~~~~~s~~   80 (491)
T 6M3W_B            1 AYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQV   80 (491)
T ss_dssp             CCCCEEEEEEEEEEEEECCCEEECCCCCCCCCHHHHTCSSCHHHHHHHTTSTTHHHHHHHHHHHHC--------------
T ss_pred             CCCcceeeccCCeEEEEEEeeeeecCCceEEechhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  786 KQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLL  865 (1273)
Q Consensus       786 kqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlppll  865 (1273)
                      ++-++.|-+..|+|||||.++|.++++++||+||||||+||..+|.|+.+.|..|.+....|||+|||.|||+.||||..
T Consensus        81 ~~~~~~~~~~~~~~~N~s~~lp~~~~~~~RS~IEDLLF~KV~t~glG~~~dYk~Ct~g~~i~DL~CaQyyNGimVLP~v~  160 (491)
T 6M3W_B           81 KQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLL  160 (491)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHhccCcccccCCccccccCCCCCCCCCcCHHHHHhcCceeecCCchhHhHHHccCCccHHHhhcccccCCEEeeCCCC
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  866 TDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945 (1273)
Q Consensus       866 tdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasal  945 (1273)
                      ++||++.||++|++|....|||+|+|+|..||||+||.||+||+|+||+||.||||+|||.||.|++.||+.++.+++||
T Consensus       161 d~~~~a~YTasL~g~ma~gg~T~g~~saaaIPFa~~vq~RlN~valtt~VL~~NQk~iA~sFN~A~~~iq~g~~t~~~AL  240 (491)
T 6M3W_B          161 TDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTAL  240 (491)
T ss_dssp             -----------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccccccCcchhccchHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  946 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA 1025 (1273)
Q Consensus       946 gklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanla 1025 (1273)
                      .|+|||||++++||++|++||+.|||||||.++||.+|||++||++|+||||+|||.+|.+||+|+|.|++|+|+|+.||
T Consensus       241 ~KiQ~VVN~q~~aL~~L~~qL~nnFgAISssI~dIy~RLD~leAdaQVDRLItGRL~aLnafVtq~l~~~~ev~~sr~LA  320 (491)
T 6M3W_B          241 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA  320 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1026 ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVT 1105 (1273)
Q Consensus      1026 atkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvt 1105 (1273)
                      ..|+.|||..||+|.+|||.|.|++|+||.||.|++|+|.+|+|.+-++.++.|.+|.++++..|++|+|+.|+..|++|
T Consensus       321 ~qKiNECVKSQS~R~gFCGnGtHi~Si~q~APnGi~F~H~~~~Pt~~~~V~a~~GlC~~~~~~~~~~g~f~~~~~~~~iT  400 (491)
T 6M3W_B          321 ATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFIT  400 (491)
T ss_dssp             HHHCCCCCSSCCCCBTSSSSSEEEEEEEEECSSEEEEEEEEEEEEEEEEEEEBSCCCSSSCCCEETTCCEECSSSCCEEC
T ss_pred             HHHHHHHHhccCcCcCcCCCCeeEEeccccCCCeEEEEEEEeCccceeEEEEeceEeecCceEeeeceeEEEcCcEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999998999999999899999999


Q sp|P0DTC2|SPIK 1106 QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDR 1185 (1273)
Q Consensus      1106 qrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidr 1185 (1273)
                      .|++|||..||..|...-..|||...-+|+++.+|++|++..|+|||++|+||+|+|+.++++++.+|+++.|++.||++
T Consensus       401 ~r~my~Pr~~t~~d~V~itsC~V~y~Nvn~~~~~~~~Pdy~df~del~~~~~N~T~p~~~l~~ld~fN~T~LNLt~EI~~  480 (491)
T 6M3W_B          401 QRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDR  480 (491)
T ss_dssp             CSSSCCCEECCSSSEECCSSCCCBCCCCCCSCCCCCCCCCCCHHHHHHHSCCCCCCCCCCCSHHHHCCCCCCCCCHHHHH
T ss_pred             ccccccCccCCCCceEEeecceeEEEEecccccCCCCCCCCCHHHHHHHHccCCCCCCCCCCCcccccccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1186 LNEVAKNLNES 1196 (1273)
Q Consensus      1186 lnevaknlnes 1196 (1273)
                      |++++++||+|
T Consensus       481 Lq~~i~~Ln~s  491 (491)
T 6M3W_B          481 LNEVAKNLNES  491 (491)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcC
Confidence            99999999986


No 18
>6U7K_C Spike glycoprotein; PEDV, Spike, Coronavirus, Fusion Protein; HET: MAN, BMA, NAG; 3.14A {Porcine epidemic diarrhea virus (strain CV777)}
Probab=100.00  E-value=1.1e-122  Score=1065.47  Aligned_cols=641  Identities=33%  Similarity=0.542  Sum_probs=505.8  Template_Neff=4.600

Q sp|P0DTC2|SPIK  521 PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600 (1273)
Q Consensus       521 patvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp  600 (1273)
                      |..+.|-....|++.++||++|..|.+|+|++++++..+...+ +..+.+...++.|+..++++..|+||..+.+.|+..
T Consensus       629 ~~pv~g~~d~sni~l~~CvdYnIYG~tG~GvI~~t~~~~~~g~-~y~s~~G~l~~Fk~~~~~~~Y~V~PC~~~~Q~vv~~  707 (1399)
T 6U7K_C          629 PKPLEGITDVSFMTLDVCTKYTIYGFKGEGIITLTNSSILAGV-YYTSDSGQLLAFKNVTSGAVYSVTPCSFSEQAAYVN  707 (1399)
T ss_dssp             SSCCCCSSCCCBCCCSSEEEEEETTEEEEEEEEEESCCCSSCS-EEECSSSSEEEEECTTTCCEEEEECSSCEEEEEEET
T ss_pred             cCCCccccccceeeeCeeEeeEeCCceeeEEEEEcCceeeCce-EEEcCCCCEEEEECCCCCCEEEEEeceeccEEEEEC
Confidence            4446777888999999999999999999999999998887777 889999999999999999999999999887744443


Q sp|P0DTC2|SPIK  601 GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQT  676 (1273)
Q Consensus       601 gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipi----gagicasyqt  676 (1273)
                      |+    -|.++ ...|++.                   ..| +++-.||   +.|.+...+|+.|+    |.|||+.+..
T Consensus       708 ~~----~vg~l-ts~n~~~-------------------~~~-~~~~~~~---~~~s~~~~~c~~p~ltYg~~~ic~~g~~  759 (1399)
T 6U7K_C          708 DD----IVGVI-SSLSNST-------------------FNN-TRELPGF---FYHSNDGSNCTEPVLVYSNIGVCKSGSI  759 (1399)
T ss_dssp             TE----EEEEE-ESCSCCS-------------------SSE-EEECSSC---EEEESCCSCCSCEEEEETTEEEETTSCE
T ss_pred             CE----EEEEe-EeeeCCC-------------------CCC-eeecCce---eEecCCCcccccceEEecCceeeecCcc
Confidence            22    23322 2223321                   223 6778888   77888899999999    9999998876


Q sp|P0DTC2|SPIK  677 QTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756 (1273)
Q Consensus       677 qtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqy  756 (1273)
                      -.-+|+ .+..      .|.  .       -....|.||+|||++|++|-+.++|.|.+|||.+|+||++.+|.++|.||
T Consensus       760 ~~~~~~-~~~~------~~~--~-------~~~~~v~IP~nft~~v~~Eyiq~~~~kV~VdCnvYVC~~N~rC~~lL~QY  823 (1399)
T 6U7K_C          760 GYVPSQ-YGQV------KIA--P-------TVTGNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQY  823 (1399)
T ss_dssp             EECCCC-BCCC------CCC--C-------CSSSEEEEECSEEEEEEEEEEECCCCCEEECHHHHHHTTCHHHHHHHTTS
T ss_pred             ccccCc-cccc------ccc--c-------ccceeEEecCCeEEEEEEEEEeecCCCeEEEceEEEeCCCHHHHHHHHHH
Confidence            433331 1111      110  0       11227899999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  757 GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPS----K---PSKRSFIEDLLFNKVT  827 (1273)
Q Consensus       757 gsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdf--ggfnfsqilpdps----k---pskrsfiedllfnkvt  827 (1273)
                      |+||..+|.||.+.+-.++-...+....-.+.++++-+..|  ++|||+.++|.+.    +   ++.||+||||||+||.
T Consensus       824 gs~C~nIn~aL~~s~~le~~E~~~~~t~si~~l~~~~~s~~~~~d~N~s~ll~~~~~~p~~d~~~~~RSvIEDLLF~KV~  903 (1399)
T 6U7K_C          824 TAACKTIESALQLSARLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPASGRVVQKRSVIEDLLFNKVV  903 (1399)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHTTSCCCCTTCCCHHHHCC------------CCCHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhhhccCHHHHhhhceeccCCCcceeeeeeccccCCCCCCCcCCcccHHHHHheeceE
Confidence            99999999999998877644333334444555555555444  7899999887542    2   4789999999999999


Q sp|P0DTC2|SPIK  828 LADAGFI-KQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF  906 (1273)
Q Consensus       828 ladagfi-kqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrf  906 (1273)
                      .+|.|++ +.|..|.+...+|||+|||.+||+.||||++++||++.||++|++|....|||.    |..||||+||.+|+
T Consensus       904 t~glg~vD~~Y~~C~~g~~i~DL~CaQ~yNGi~VLP~v~~~~~~a~YT~sl~g~m~~gg~ta----aaaiPFa~~vq~Rl  979 (1399)
T 6U7K_C          904 TNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVDAEKLHMYSASLIGGMALGGITA----AAALPFSYAVQARL  979 (1399)
T ss_dssp             TTCCSSSCCCGGGGSSCSSCCCHHHHHHHTTEEECCCSSCHHHHHHHHHHHHGGGGCCCSSC----SSCCCHHHHHHHHH
T ss_pred             ecCCCCcchhhHHhcCCccHHHHhcccccCcEEEeCCCCCHHHHHhHHHHHHHHHHhcchhH----hhhChHHHHHHHHh
Confidence            9999999 999999999999999999999999999999999999999999999999999997    66799999999999


Q sp|P0DTC2|SPIK  907 NGIGVTQNVLYENQKLIANQFNSAIGKIQDSLS--------------STASALGKLQDVVNQNAQALNTLVKQLSSNFGA  972 (1273)
Q Consensus       907 ngigvtqnvlyenqklianqfnsaigkiqdsls--------------stasalgklqdvvnqnaqalntlvkqlssnfga  972 (1273)
                      |++|+||+||.||||+||+.||.||+.||+.++              ++++||.|+|||||++++||++|++||+.||||
T Consensus       980 N~~~lt~~vL~~NQk~iA~sFN~A~~~iq~~f~~v~~ai~qts~~~~t~~~Al~kiQ~VVN~~~~aL~~l~~qL~~nFgA 1059 (1399)
T 6U7K_C          980 NYLALQTDVLQRNQQLLAESFNSAIGNITSAFESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQA 1059 (1399)
T ss_dssp             HTTSCCCCCSSTHHHHHHHHHHHHHHHHHTTTTCCGGGCCGGGGSTTSHHHHHHHHHHHHHHTTHHHHHHHHTTSCCTTS
T ss_pred             hhhHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999866              899999999999999999999999999999999


Q sp|P0DTC2|SPIK  973 ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG-KGYHLMS 1051 (1273)
Q Consensus       973 issvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcg-kgyhlms 1051 (1273)
                      |||.++||++|||++||++|+||||+|||.+|.+||+|+|+|++|+|+|+.||..|+.|||..||+|.+||| .|.|++|
T Consensus      1060 ISssi~dIy~rLd~leAdaQvDRLItGRL~aLna~vtq~l~~~~~v~~sr~LA~qKinECVksQS~R~gFCGnnG~Hv~S 1139 (1399)
T 6U7K_C         1060 ISSSIDDIYSRLDILSADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNECVKSQSQRYGFCGGDGEHIFS 1139 (1399)
T ss_dssp             SCSCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTTTSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCceEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 7999999


Q sp|P0DTC2|SPIK 1052 FPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG--------THWFVTQRNFYEPQIITTDNTFV 1122 (1273)
Q Consensus      1052 fpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvfvsng--------thwfvtqrnfyepqiittdntfv 1122 (1273)
                      +||.||.|++|+|.+|+|.+-++.+++|.+|+++ ++..||++.|+-..        ..|++|.|++|||..||.++...
T Consensus      1140 ~~q~APnGi~F~H~~~~P~~~~~v~a~~G~C~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~T~r~~y~Pr~~t~~d~v~ 1219 (1399)
T 6U7K_C         1140 LVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTLREPGLVLFTHELQTYTATEYFVSSRRMFEPRKPTVSDFVQ 1219 (1399)
T ss_dssp             EEEEETTEEEEEEEEEEESCEEEEEECCCEEETTTEEEEESCTTEEEEESCTTSSSCSCCEEEESSSCCCBCCCTTTEEE
T ss_pred             eccccCceEEEEEEEeccCceEEEEEEEEEEecCCeeEEecCCceEEEeeCCcccccceEEEeccccccCCCCCccceEE
Confidence            9999999999999999999999999999999995 78999999766532        48999999999999999999999


Q sp|P0DTC2|SPIK 1123 SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHT---SPDVDLGDISGINASVVNIQKEIDRLNE----------- 1188 (1273)
Q Consensus      1123 sgncdvvigivnntvydplqpeldsfkeeldkyfknht---spdvdlgdisginasvvniqkeidrlne----------- 1188 (1273)
                      -..|||...-++.++..+..|++-.|++||+|+||+++   .||.++   ..+|+.+.|++.||++|++           
T Consensus      1220 ~~~c~v~y~~~~~~~~~~~~p~~~d~~~~l~~~~~~~~~~~~p~~~~---~~~n~t~lnl~~ei~~l~~~~~~l~~~~~~ 1296 (1399)
T 6U7K_C         1220 IESCVVTYVNLTSDQLPDVIPDYIDVNKTLDEILASLPNRTGPSLPL---DVFNATYLNLTGEIADLEQRSESLRNTTEE 1296 (1399)
T ss_dssp             ESSCCTTSEEECTTTHHHHSTTC---------------------------------------------------------
T ss_pred             eecCeeEEEEcCcccCCCCCCCCCChHHHHHHHHHcCCCCCCCCCCh---hcceeeeechHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999884   455543   4789999999999999877           


Q sp|P0DTC2|SPIK 1189 ---VAKNLNESLIDLQELGKYEQYIKWP 1213 (1273)
Q Consensus      1189 ---vaknlneslidlqelgkyeqyikwp 1213 (1273)
                         +.|+||+++|||++|++||.|+||-
T Consensus      1297 ~~~~i~~lN~s~idLe~L~~~et~~~~~ 1324 (1399)
T 6U7K_C         1297 LRSLINNINNTLVDLEWLNRVETGSGYI 1324 (1399)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHhccCHHHHcceeecCccC
Confidence               9999999999999999999999993


No 19
>6BFU_C Spike protein; coronavirus spike glycoprotein, porcine deltacoronavirus; HET: MAN, BMA, NAG; 3.5A {Porcine deltacoronavirus}
Probab=100.00  E-value=3.5e-119  Score=1017.49  Aligned_cols=746  Identities=30%  Similarity=0.489  Sum_probs=605.1  Template_Neff=4.700

Q sp|P0DTC2|SPIK  267 VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQ-PTESIVRFPNITNLCPFGEVFNAT  345 (1273)
Q Consensus       267 vgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq-ptesivrfpnitnlcpfgevfnat  345 (1273)
                      +.|...-..|+ |-.||+|.|.+.|--.|+..-||.-.+|....|.|..++..+. ..+.+|..|+..+....-  .|.+
T Consensus       240 va~a~~tdVL~-~f~ngtIq~viyCD~sp~~~LaCqy~tfnfsDGFYp~t~~~~v~~~ktfV~lP~~~nhT~v~--ln~t  316 (1024)
T 6BFU_C          240 FALANLTDTLI-TLTNTTISQITYCDKSVVDSIACQRSSHEVEDGFYSDPKSAVRARQRTIVTLPKLPELEVVQ--LNIS  316 (1024)
T ss_dssp             EEEEEEEEEEE-EEETTEEEEEEETTTCHHHHHHHHTTSSSCCSEEEECGGGCBCCSEEEEECSCCCCCEEEEE--EEEE
T ss_pred             EEEeeccchhe-eeeCCcccEEEECCCChhcccchhccccccCCCccCCCccccccCCceEEEcCCCCceeEEE--EEEE
Confidence            34444444555 8899999999999977999999999999999999999988764 556899999987765421  1111


Q sp|P0DTC2|SPIK  346 RFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL  425 (1273)
Q Consensus       346 rfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynykl  425 (1273)
                      -+...-+   ...                +++..|+     -+..|..+    ++                      +.+
T Consensus       317 f~n~s~a---g~v----------------~~i~~~~-----~s~yCV~n----s~----------------------ft~  346 (1024)
T 6BFU_C          317 AHMDFGE---ARL----------------DSVTING-----NTSYCVTK----PY----------------------FRL  346 (1024)
T ss_dssp             EEEETTE---EEE----------------EEEEETT-----BSEEECCS----SE----------------------EEE
T ss_pred             EeecCCC---Ccc----------------eeEEEec-----cceeEecC----Ce----------------------EEE
Confidence            1110000   000                0011111     11122211    00                      111


Q sp|P0DTC2|SPIK  426 PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERD----------ISTEIYQAGSTPCNGVEGFNCYFPLQSY  495 (1273)
Q Consensus       426 pddftgcviawnsnnldskvggnynylyrlfrksnlkpferd----------isteiyqagstpcngvegfncyfplqsy  495 (1273)
                      ..+|..              |+.|.+    .+ ..--||..+          ++-.+.+.|           |-++....
T Consensus       347 ~~~f~~--------------g~sy~~----~~-~~sCpFr~e~INNyL~FnSlCvSl~~gg-----------Ck~~v~~~  396 (1024)
T 6BFU_C          347 ETNFMC--------------TGCTMN----LR-TDTCSFDLSAVNNGMSFSQFCLSTESGA-----------CEMKIIVT  396 (1024)
T ss_dssp             EEECCE--------------ESSEEE----EE-ESSSSSCHHHHTTTCEEEEEEEESSCCS-----------EEEEEEEE
T ss_pred             EEEEee--------------ccCccc----cc-CCCCCCChhhccCCCccCeEEEEeCCCc-----------eeeEEEEE
Confidence            111110              001111    00 011122211          111111222           54444432


Q sp|P0DTC2|SPIK  496 GFQPTNGVGYQPYRVVVLSFE---LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADT  572 (1273)
Q Consensus       496 gfqptngvgyqpyrvvvlsfe---llhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadt  572 (1273)
                      .     ...|++++.|.++++   ......++|. +..++++.++||++|.-|.+|+|+++++|..+...+.+ .|...-
T Consensus       397 ~-----~~sy~~~~~VyVt~s~Gsri~g~~~~~~-~d~s~i~l~~CvdYnIYG~tG~GvI~~~n~~~~~Gl~~-~s~sG~  469 (1024)
T 6BFU_C          397 Y-----VWNYLLRQRLYVTAVEGQTHTGTTSVHA-TDTSSVITDVCTDYTIYGVSGTGIIKPSDLLLHNGIAF-TSPTGE  469 (1024)
T ss_dssp             S-----SSEEECSCCEEEEEEEEEEEEECSSSSC-CCTTCCCCSSEEEEEETTEEEEEEEEECSCCCCSCSEE-ECTTSC
T ss_pred             E-----EeeeeceeEEEEEecCCCeeeccCCccC-CCCCceeeceeeeEEecCeeeeEEEecCCEEeeCcEEE-EcCCCC
Confidence            1     123678888888877   3334445664 56699999999999999999999999999999989988 899999


Q sp|P0DTC2|SPIK  573 TDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIG  652 (1273)
Q Consensus       573 tdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragclig  652 (1273)
                      .++.+++.++++..|+||....++|+..|.-    |+ ++...|                    +++++.|++..||..+
T Consensus       470 L~~Fk~~~~g~~Y~V~PC~~v~Q~vV~~g~i----VG-~lts~n--------------------~t~s~~f~~~~~~~~~  524 (1024)
T 6BFU_C          470 LYAFKNITTGKTLQVLPCETPSQLIVINNTV----VG-AITSSN--------------------STENNRFTTTIVTPTF  524 (1024)
T ss_dssp             EEEEEETTTTEEEEEECSSCCEEEEEETTEE----EE-EEESCG--------------------GGCCTTCSEEEEETTE
T ss_pred             eeEEEeCCCCCEEEEeeCCCCcEEEEECCEE----EE-EEEccC--------------------CCCCccccceeEecee
Confidence            9999999999999999999877765544433    22 122222                    3478889999999999


Q sp|P0DTC2|SPIK  653 AEHVNN-SYECDIPIGA----GICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEIL  727 (1273)
Q Consensus       653 aehvnn-syecdipiga----gicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteil  727 (1273)
                      +.+.++ ..+|+.|+|.    |||+.+..-...|+..          +     ..-.+...++.|.||+|||++|++|-+
T Consensus       525 ~~~s~~~~~~C~~p~~syg~~giC~dg~~~~~~~~~~----------~-----~p~~~~~vt~~i~IP~nft~~v~~Eyi  589 (1024)
T 6BFU_C          525 FYSTNATTFNCTKPVLSYGPISVCSDGAIVGTSTLQN----------T-----RPSIVSLYDGEVEIPSAFSLSVQTEYL  589 (1024)
T ss_dssp             EEEECCSCCCCSCEEEEETTEEEETTSCEEECCCEEC----------C-----CSCSSCCCCSSEEEEEEEEEEEEEEEE
T ss_pred             eeecCCCccccccceeeccceeEccCCccccceeeec----------c-----CCceeeccCeEEEccCceEeeEEEeEE
Confidence            999875 7999999999    9999886633322110          0     111123344589999999999999999


Q sp|P0DTC2|SPIK  728 PVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFG-GFNFSQIL  806 (1273)
Q Consensus       728 pvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfg-gfnfsqil  806 (1273)
                      ..+|.|.+|||.+|+||++.+|.+||.|||+||..+++||.+.+..+|.+..+++...++-++.+-|..|+ +||||.+|
T Consensus       590 q~~~~kv~idC~~YVC~~~~~C~~ll~qYg~~C~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~s~~l  669 (1024)
T 6BFU_C          590 QVQAEQVIVDCPQYVCNGNSRCLQLLAQYTSACSNIEAALHSSAQLDSREIINMFQTSTQSLQLANITNFKGDYNFSSIL  669 (1024)
T ss_dssp             ECCCCEEEECHHHHHHTTBHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHTCGGGGCSSSCCTTTS
T ss_pred             eeecCceEEecchhhcCCCHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHhhCcccccccccccCCCCccchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888884 69999999


Q sp|P0DTC2|SPIK  807 PDPSKPSKRSFIEDLLFNKVTLADAGFI-KQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885 (1273)
Q Consensus       807 pdpskpskrsfiedllfnkvtladagfi-kqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsg  885 (1273)
                      |.+.  +.||+||||||+||..+|.|++ +.|.+|.+....|||+|||.+||+.||||.+++||++.||++|++|....|
T Consensus       670 ~~~~--~~RS~iEDlLF~KV~t~glg~vD~~Y~~C~~g~~i~DL~CaQ~ynGi~VLP~v~~~~~~a~YT~sl~g~m~~gg  747 (1024)
T 6BFU_C          670 TTRI--GGRSAIEDLLFNKVVTSGLGTVDQDYKSCSRDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGG  747 (1024)
T ss_dssp             CSST--TCCCHHHHHCCCCCCC------CCCGGGGGSTTGGGSHHHHHHTTTEEEECCSSCHHHHHHHHHHHHHGGGCCS
T ss_pred             CCCC--CCccHHHHHHcceeeecCCCccchHHHhccCCccHHHHhhccccCeEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            8774  7999999999999999999999 899999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  886 WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSS--------------TASALGKLQDV  951 (1273)
Q Consensus       886 wtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslss--------------tasalgklqdv  951 (1273)
                      ||.    |..||||+||.+|+|++|+||+||.||||+|||.||.|||.||+.+++              +++||.|+|||
T Consensus       748 ~ta----aaaiPFa~~vq~RlN~~~lt~~vL~~NQ~~iA~sFN~A~~~i~~~f~~v~~ai~qts~~~~t~~~Al~kiQ~V  823 (1024)
T 6BFU_C          748 LTA----AAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVAIAIKKIQTV  823 (1024)
T ss_dssp             SSS----SCCCCHHHHHHHHHHHHTTSSSCCSTTHHHHHHHHHHHHHHHHHHHHTTCCSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHH----hHhChHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            997    556899999999999999999999999999999999999999988555              99999999999


Q sp|P0DTC2|SPIK  952 VNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSE 1031 (1273)
Q Consensus       952 vnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmse 1031 (1273)
                      ||++++||++|++||+.|||||||.++||.+|||++||++|+||||+|||.+|.+||+|+|.|++|+|+|+.||..|+.|
T Consensus       824 VN~~~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAdaQvDRLItGRL~aLna~vtq~l~~~~~v~~sr~lA~qKinE  903 (1024)
T 6BFU_C          824 VNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINE  903 (1024)
T ss_dssp             HHTTTHHHHHHHHGGGCCCSSSCSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1032 CVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVF-VSNGTHWFVTQRNF 1109 (1273)
Q Consensus      1032 cvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdg-kahfpregvf-vsngthwfvtqrnf 1109 (1273)
                      ||..||+|.+|||.|.|++|+||.||.|++|+|.+|+|.+-++.+++|.+|+++ ++..|+.|.+ +.+...|++|.|++
T Consensus       904 CVksQS~R~gFCGnG~Hv~S~~q~AP~Gi~F~H~~~~P~~~~~v~a~~G~C~~~~~~~~~~~g~~~~~~n~~~~~T~r~~  983 (1024)
T 6BFU_C          904 CVKSQSPRYGFCGNGTHIFSLTQTAPNGIFFMHAVLVPNKFTRVNASAGICVDNTRGYSLQPQLILYQFNNSWRVTPRNM  983 (1024)
T ss_dssp             CCCSCCCCTTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEECCBCEEEETTTEEEEECTTEEEEEETTEEEEEESSS
T ss_pred             HHhccCCCcCCCCCCeeEEEeeecCCCeEEEEEEEecccceeEEEEEEEEeecCCceEEeCCceEEEeeCCEEEEecccc
Confidence            999999999999999999999999999999999999999999999999999995 7888888866 78778999999999


Q sp|P0DTC2|SPIK 1110 YEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSF 1148 (1273)
Q Consensus      1110 yepqiittdntfvsgncdvvigivnntvydplqpeldsf 1148 (1273)
                      |||..||..|...-..|||...-+|+++..+..|++-.|
T Consensus       984 y~Pr~~t~~d~v~~~sC~v~y~n~~~~~~~~~~p~~~D~ 1022 (1024)
T 6BFU_C          984 YEPRLPRQADFIQLTDCSVTFYNTTAANLPNIIPDIIDV 1022 (1024)
T ss_dssp             CCCBCCCGGGEEEESSCCTTSEEECTTTGGGTSTTCCCT
T ss_pred             ccCCCCCcccEEEcccceeEEEECCcccCCCCCCCCCCC
Confidence            999999999999999999999999999999988886544


No 20
>6B3O_B Spike glycoprotein; Coronavirus, membrane fusion, MHV, SARS; 4.1A {Murine coronavirus}
Probab=100.00  E-value=7.3e-117  Score=954.95  Aligned_cols=497  Identities=42%  Similarity=0.726  Sum_probs=333.3  Template_Neff=3.300

Q sp|P0DTC2|SPIK  703 NSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF  782 (1273)
Q Consensus       703 nsvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevf  782 (1273)
                      .....++..|.||+|||++|++|-+.++|.|.+|||.+|+||++.+|.+||.|||+||..+++||.|.+..+|....+++
T Consensus        45 ~~~~~~~~~isIP~nFtlsv~~EyiQt~~~kVsIDC~~YVCngn~rC~~LL~QYgs~C~~I~~aL~~v~~~~d~~~~~~~  124 (605)
T 6B3O_B           45 VQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYGSFCVNVNAILNEVNNLLDNMQLQVA  124 (605)
T ss_dssp             -CBCSCCCCEEEEEEEEEEEEEEEEECSCCCCCCCHHHHHTCSCHHHHHHHTTSCSHHHHHHHHHHHC------------
T ss_pred             CcccCcceEEEecCceEeEEEEEEeeccCCCeEEehhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  783 AQVKQIYKTP-----PI-KDFGGFNFSQILPD-----------PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIA  845 (1273)
Q Consensus       783 aqvkqiyktp-----pi-kdfggfnfsqilpd-----------pskpskrsfiedllfnkvtladagfikqygdclgdia  845 (1273)
                      ...++.+..+     .| ...|+||||.++|.           |++|+.||+|||||||||..+|.|+.+.|..|.+...
T Consensus       125 ~~~~~~~~~s~~~~~~i~~~~g~fN~s~ll~~~~~~~~~~~~~~~~~~~RSaIEDLLFnKVvt~glGt~~dYk~Ct~g~~  204 (605)
T 6B3O_B          125 SALMQGVTISSRLPDGISGPIDDINFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQE  204 (605)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhccCcccccCCCCCCCCCCCccchhhcccccCCcccCCCCCCcCCCccHHHHHHCCceEecCCchhHHHHhccCCcc
Confidence            9998888764     22 33456999999986           7778899999999999999999999999999999999


Q sp|P0DTC2|SPIK  846 ARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN  925 (1273)
Q Consensus       846 ardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklian  925 (1273)
                      .|||+|||.|||+.||||..++||++.||++|.+|....|||.    |..||||+||.||+||+|+||+||.||||+|||
T Consensus       205 iaDL~CAQyyNGImVLPpVvda~~~amYTaSL~G~ma~gG~Ta----AaaIPFa~~vQaRlNyvaltt~VLq~NQk~iAn  280 (605)
T 6B3O_B          205 VRDLLCVQSFNGIKVLPPVLSESQISGYTTGATAAAMFPPWSA----AAGVPFSLSVQYRINGLGVTMNVLSENQKMIAS  280 (605)
T ss_dssp             ----------------------------------------------------------------------------CHHH
T ss_pred             hHHHhCccccCcEEeeCCCCCHHHHHHHHHHHHHHhhcccchh----cccCchHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997    556899999999999999999999999999999


Q sp|P0DTC2|SPIK  926 QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ 1005 (1273)
Q Consensus       926 qfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslq 1005 (1273)
                      .||.|+|.||+.++++++||.|+|||||++++||++|++||+.|||||||.++||.+|||++||++|+||||||||.+|.
T Consensus       281 sFN~AignIq~gf~tta~AL~KIQdVVN~q~~aL~~Lt~QL~nNFgAISSSI~dIy~RLD~leAdaQVDRLItGRL~aLN  360 (605)
T 6B3O_B          281 AFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKAQIDRLINGRLTALN  360 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1006 TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG 1085 (1273)
Q Consensus      1006 tyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdg 1085 (1273)
                      +||+|+|.+++|+|+|+.||..|+.|||..||+|.+|||.|.|++|+||.||.|++|+|.+|+|.+-++.++.|.+|.++
T Consensus       361 afVtQ~L~~~~eVr~sr~LA~qKINECVKSQS~RygFCGnGtHifSi~q~APnGi~FlH~~y~Pt~~~~V~A~~GlCv~~  440 (605)
T 6B3O_B          361 AYISKQLSDSTLIKVSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISG  440 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCCCBSCSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEECCBSCEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcCCCCeEEEEeeeccCCeEEEEEEEecccceEEEEEEeeEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999995


Q sp|P0DTC2|SPIK 1086 -KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDV 1164 (1273)
Q Consensus      1086 -kahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdv 1164 (1273)
                       ++..|+.|+|+.+..+|++|.|++|+|..+|..|...-..|||...-++.++..|..|+.-.|++||+++|+|+++.-.
T Consensus       441 ~~~~~~~~g~f~~~n~~~~iT~r~my~Pr~~t~~dfV~itSC~V~Y~Nvt~t~lp~viPdyiDfn~eLee~~~n~t~t~P  520 (605)
T 6B3O_B          441 DRGLAPKAGYFVQDDGEWKFTGSSYYYPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWFKNQTSIAP  520 (605)
T ss_dssp             SCEEEESSEEEEEETTEEEEEESSSCCCEECCTTSEEEESCSCCEEEECCCCCCCCCCCCCSCHHHHHTTTCCCCCCCCC
T ss_pred             CceEEecCeEEEeeCCeEEEeccccccCCCCCccceEEeeccccEEEecccccCCCCCCCCCChHHHHHHHHhcCCCCCC
Confidence             7999999999999889999999999999999999999999999999999999999999999999999999999987444


Q sp|P0DTC2|SPIK 1165 DLG-DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1203 (1273)
Q Consensus      1165 dlg-disginasvvniqkeidrlnevaknlneslidlqel 1203 (1273)
                      |+. |+.-+|+++.|+..||++|+++.|+||+++|||..-
T Consensus       521 dl~~~ld~fN~T~LNLt~EI~~Lq~~i~~LN~s~IDL~~~  560 (605)
T 6B3O_B          521 DLSLDFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLIKR  560 (605)
T ss_dssp             CCCCCGGGCCCCCCCCHHHHHHHHHHHHHTTTC-------
T ss_pred             CcCCCHHHccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443 688999999999999999999999999999999754


No 21
>6PZ8_A S protein, G2 heavy chain; MERS-CoV, coronavirus, DPP4, receptor-binding, membrane; HET: MAN, NAG, BMA; 4.19A {Middle East respiratory syndrome-related coronavirus}
Probab=100.00  E-value=8.5e-112  Score=897.44  Aligned_cols=445  Identities=43%  Similarity=0.743  Sum_probs=424.4  Template_Neff=3.100

Q sp|P0DTC2|SPIK  694 AYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVE  773 (1273)
Q Consensus       694 aytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiave  773 (1273)
                      .|++.+-. ..+.+++..|.||+||||+|++|.++++|.|.+|||.+|+||++.+|.+||.|||+||..+|++|.|.+.+
T Consensus        12 ~~~~p~~~-~~~~~~~~~i~IP~nFtl~v~~EyiQt~~~kV~IDC~~YVC~~~~~C~~LL~QYgs~C~~I~~aL~~~~~~   90 (472)
T 6PZ8_A           12 AFNHPIQV-DQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLR   90 (472)
T ss_dssp             CCCCCEEC-CCCCTTEEEEEECCEEEEEEEEEEEECCCCCEEECHHHHHSSSCHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcee-ccccCCCeeEEeccceEEEEEEEEEEecCCceEEechhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56666554 67788899999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  774 QDKNTQEVFAQVKQIYKTPPIKDF-GGFNFSQILPDPS---KPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDI--AAR  847 (1273)
Q Consensus       774 qdkntqevfaqvkqiyktppikdf-ggfnfsqilpdps---kpskrsfiedllfnkvtladagfikqygdclgdi--aar  847 (1273)
                      +|....+++...++-+..|-+..| |+|||+.++|.+.   ++++||+||||||+||..+|.|+.+.|..|....  ..|
T Consensus        91 ~d~~~~~~~s~~~~~~~~~~~~~~~g~fN~s~ll~~~~~~~~~~~RS~IEDLLF~KV~t~glG~~~~Yk~Ct~~~g~~i~  170 (472)
T 6PZ8_A           91 QDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASAR  170 (472)
T ss_dssp             HHHHHHHHHHHHCCSEECCCCTTTTTTSCCTTSCCC--------CCCHHHHHHHHHSCCCCCCSSSCGGGGSSSSCTTCC
T ss_pred             ccHHHHHHHHhccccccCCCcCCCCCCcccceeccCcCCCCCCcceeHHHHHHcCceeecCCcchHhHHHHHhcCCccHH
Confidence            999999999999999988887777 5799999999775   4458999999999999999999999999999544  899


Q sp|P0DTC2|SPIK  848 DLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF  927 (1273)
Q Consensus       848 dlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqf  927 (1273)
                      ||+|||.|||+.||||.+++||++.||++|.+|....|||+|..+|..||||+||.||+||+|+||+||.||||+|||.|
T Consensus       171 DL~CaQyyNGi~VLPpv~d~~~~a~YTasL~g~ma~gg~T~GitsaaaIPFa~~vq~RlN~v~lt~~VL~~NQk~iA~sF  250 (472)
T 6PZ8_A          171 DLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKF  250 (472)
T ss_dssp             CTTTTHHHHTEEECCCSSHHHHHHHHHHHHHTTCSCSCSSCCSSCBCCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcccccCcEEEeCCCCCHHhHHHHHHHHHHHHHhcchhccchhhccCchHHHHHHHhhhhcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  928 NSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY 1007 (1273)
Q Consensus       928 nsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqty 1007 (1273)
                      |.|||.||+.++++++||.|+|||||++++||++|++||+.|||||||.++||++|||++||++|+||||+|||.+|.+|
T Consensus       251 N~Aig~iq~gf~tt~~AL~KiQ~VVN~q~~aL~~L~~qL~nnFgAISssI~dIy~RLD~leAdaQVDRLItGRL~aLnaf  330 (472)
T 6PZ8_A          251 NQALGAMQTGFTTTNEAFHKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAF  330 (472)
T ss_dssp             HHHHHTHHHHSSTTCHHHHHHHHHHHHHHHHHHHHHHGGGCCSSSSCSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK 1008 VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHD--- 1084 (1273)
Q Consensus      1008 vtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichd--- 1084 (1273)
                      |+|+|.|++|+|+++.||..|+.|||..||+|.+|||.|.|++|+||.||+|++|+|.+|+|.+..+.++.|.+|++   
T Consensus       331 Vsq~l~~~~~v~~sr~LA~qKiNECVKSQS~R~gFCGnGtHi~Si~q~APnGi~F~H~~y~Pt~~~~V~a~~GlC~~~~~  410 (472)
T 6PZ8_A          331 VAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANP  410 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCSSCCCCSSSSSSSSCEEEEEEEETTEEEEEEEEEEEECCEEEEEESCEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCeeEEEEeeccCCeEEEEEEEEccCceeEEEEEeEEeecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999995   


Q sp|P0DTC2|SPIK 1085 GKAHFPREGVFVSNG-----THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP 1140 (1273)
Q Consensus      1085 gkahfpregvfvsng-----thwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp 1140 (1273)
                      +++..|+.|+|+.+.     ++|++|.|++|+|..||.+|+.. -.|||....+|+++++|
T Consensus       411 ~~~~~p~~g~fv~~n~t~~~~~w~~T~r~~Y~P~~iT~~n~v~-~sc~vny~nv~~~~~~p  470 (472)
T 6PZ8_A          411 TNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKY-VAPQVTYQNISTNLPPP  470 (472)
T ss_dssp             EEEEEESSEEEEECCCTTCCSSEEEEESSSCCCEECCGGGEEE-CCCCTTSEEESSCCCTT
T ss_pred             CceEeecCceEEEeCCccccceEEEeccccccCcCCCccceEE-ecCcceEEEccccCCCC
Confidence            578999999999866     46999999999999999999888 78899999999999998


No 22
>6PZ8_F S protein, G2 heavy chain; MERS-CoV, coronavirus, DPP4, receptor-binding, membrane; HET: BMA, MAN, NAG; 4.19A {Middle East respiratory syndrome-related coronavirus}
Probab=100.00  E-value=3.1e-74  Score=636.33  Aligned_cols=621  Identities=20%  Similarity=0.314  Sum_probs=345.6  Template_Neff=4.300

Q sp|P0DTC2|SPIK   14 QCVNL-TTRTQLPPAYT----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG--T-------KRF   79 (1273)
Q Consensus        14 qcvnl-ttrtqlppayt----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng--t-------krf   79 (1273)
                      .|... -...-+++.++    -+-.+|+||||..++++..+-.|+||.+.-++.+-.-   ++|++.  +       -.+
T Consensus        12 ~C~~~~~~~~~~~~~~s~~idvs~~~G~yYp~~rvysN~tll~~glfp~~gs~~~~y~---~~~~~~~~~~~~~~~~~~y   88 (726)
T 6PZ8_F           12 ACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYV---YSAGHATGTTPQKLFVANY   88 (726)
T ss_dssp             BCCCEEECGGGGCCCCCCCCCGGGTTTCBCCSSCEECSEEEEEEEEECCTTCCCEEEC---CEECCBCSSSBCSEEECSC
T ss_pred             ceEEecccccccCCCCCcceecccCceeEeeCCeeEeeeeeeecccccCCCCcceEEE---EeecCCCCCCCccceeecC
Confidence            36655 23334445555    3446899999999999999999999999988876532   333332  2       356


Q sp|P0DTC2|SPIK   80 DNPVLPFNDGVYFASTEKSNIIR-----------------GWIFGTTLDSKT---Q------SLLIVNNATNVVI-----  128 (1273)
Q Consensus        80 dnpvlpfndgvyfasteksniir-----------------gwifgttldskt---q------sllivnnatnvvi-----  128 (1273)
                      +.+..||+||+++...+..|.-.                 .++||+|.+...   +      +++|+++-.+.++     
T Consensus        89 ~~~~~~F~dGifvkv~~~~n~t~~~~~~~~~~~~~~~~ypa~~fGstf~n~s~~~~~~~~~~tlvI~P~~~g~~~~~~~c  168 (726)
T 6PZ8_F           89 SQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYC  168 (726)
T ss_dssp             TTCCEECTTCEEEEECTTTTCEEECSSSTTCEEEEECCCCCEEEESCEECCTTSCSCEECSEEEEEEEETTTTEEEEEEE
T ss_pred             CCChHHccCeEEEEEeeeeccCCCeeeCCCcccchhhcccceEEeccccCCCCccceeeeceEEEEecCCCCccceeeee
Confidence            77889999999998887666532                 256999998766   6      8999999887654     


Q sp|P0DTC2|SPIK  129 --KVCEFQFCNDPFLGVYYHKNN---KSWME---------SEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVF  194 (1273)
Q Consensus       129 --kvcefqfcndpflgvyyhknn---kswme---------sefrvyssannctfeyvsqpflmdlegkqgnfknlrefvf  194 (1273)
                        ...+..-|..|..-+++.-+.   .+|-.         -+++.|....||+|.|. +.|-+|...  ..|-    |.|
T Consensus       169 ~~~prt~t~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~nft~d~~~--~wf~----~~F  241 (726)
T 6PZ8_F          169 ILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYT-YNITEDEIL--EWFG----ITQ  241 (726)
T ss_dssp             EEEECCSBTSTTSTTCCCCCEEECHHHHEETTEECTTHHHHHHHHHEEEEEEEEEEE-EECCCCCCC--EEEE----EEE
T ss_pred             ecccCccccCCCCCeEeeecccCCCCccCCCCcccccccccchhhheecCCcEEEEe-eecCcchhh--heEE----EEE
Confidence              323344555666655542221   23422         36788899999999875 344333211  1111    999


Q sp|P0DTC2|SPIK  195 KNID-GYFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYL  270 (1273)
Q Consensus       195 knid-gyfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgyl  270 (1273)
                      +..| |.|-+|..++..+.   ..-+| |...+.+..               .+-|+..++   .+.+. .-++|||++|
T Consensus       242 ~~~~~G~f~~Y~~d~~~~~~f~f~~~~-~~~~~~yy~---------------vip~~~~~~---~~~~~-~~~~~yV~~L  301 (726)
T 6PZ8_F          242 TAQGVHLFSSRYVDLYGGNMFQFATLP-VYDTIKYYS---------------IIPHSIRSI---QSDRK-AWAAFYVYKL  301 (726)
T ss_dssp             ETTEEEEEESTTTCTTTCCBEEEEEEC-CCSCCCEEE---------------ECCEEECCC---GGGCC-EECCEEEEEC
T ss_pred             eeCCceeEEEEEEecCCCcceeccccc-ceeccceee---------------eeeeeecCC---cccce-eEEEEEEEEc
Confidence            9999 99999877655442   22233 444444443               333444444   45566 7889999999


Q sp|P0DTC2|SPIK  271 QPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASV  350 (1273)
Q Consensus       271 qprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasv  350 (1273)
                      .+|+|||+|+.||.|++||||+-|+++|-||..+||.+++|+|++|+||+||....+|.++. ..|+|.++++ .++.++
T Consensus       302 ~~~~yLl~Fd~nG~It~AvDCa~d~~sEL~Cst~Sf~p~tGVY~lS~y~aqP~g~V~~~~~~-~~C~~~~~~~-~~~Psp  379 (726)
T 6PZ8_F          302 QPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEG-VECDFSPLLS-GTPPQV  379 (726)
T ss_dssp             EEEEEEEEECTTSCEEEEEETTSSHHHHHHHHTSSSSSSCSCEEEEEECCCCEEEEEECCC-------------------
T ss_pred             ccceEEEecCCCCeEEEEEeccCCccccceeEeeeecCCCCeeecCcEEEEeeeEEEEecCC-CCCCChHHhc-CCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999 9999999999 889999


Q sp|P0DTC2|SPIK  351 YAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFT  430 (1273)
Q Consensus       351 yawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddft  430 (1273)
                      +.|.|+.++||..|+++|++....+.|+||||+|.||.+.||..|++|.|.|..+..++++||++|-|++||||+|++|+
T Consensus       380 ~~w~R~~fsNCnfN~s~Lls~~~~~~f~C~gIspskLa~mCfsSvtiD~Faip~s~~~~L~~g~~g~i~~yNYkld~~~~  459 (726)
T 6PZ8_F          380 YNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNP  459 (726)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeEEEEecccccHHHHHhccceeeeeecCCCHHHHhhhccceeeEEEEEcchhhccccCCCCCccchhccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  431 GCVIAWNSNNLDSK--VGGNYNYLYRLFRKSNLKPFERDISTEIYQAG--STPCN--GVEGFNCYFPLQS----------  494 (1273)
Q Consensus       431 gcviawnsnnldsk--vggnynylyrlfrksnlkpferdisteiyqag--stpcn--gvegfncyfplqs----------  494 (1273)
                      ||+++|+-.+++..  --.+|+|+-|-.+...     ++. +++-|--  .+-|+  ... -+|+.+...          
T Consensus       460 ~C~l~~~~~~~~~n~t~~~~~~~i~~~~~~~~-----~~~-~~~~~~~~~~~~cpc~~~~-~~~~~~~~~~~~~~~~~~~  532 (726)
T 6PZ8_F          460 TCLILATVPHNLTTITKPLKYSYINKCSRLLS-----DDR-TEVPQLVNANQYSPCVSIV-PSTVWEDGDYYRKQLSPLE  532 (726)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEEEEcCcccccCCCcccceeeeeeccCCC-----CCC-cchhhhccccccCCCcccC-CccccCCCCcccccccccc
Confidence            99999985442222  2567777776666443     222 2221100  11111  000 112221111          


Q sp|P0DTC2|SPIK  495 -YGFQP----TNGVGYQPYRVVVLSFELLHAPATVCGPK-----KSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQ  564 (1273)
Q Consensus       495 -ygfqp----tngvgyqpyrvvvlsfellhapatvcgpk-----kstnlvknkcvnfnfngltgtgvltesnkkflpfqq  564 (1273)
                       -+..+    ..++++|.+.+++++++..-.+.|||..+     ..++++.++||++|..|.+|+||++++|..+...+.
T Consensus       533 ~~~~~~~~~~~~~~~~~c~~lvvIt~~~gs~~~TvcP~~~~~~~~~s~i~l~~Cv~YnIYG~tG~GvI~~~n~~~~~gl~  612 (726)
T 6PZ8_F          533 GGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQR  612 (726)
T ss_dssp             -------------------------------------------CCSCSCCCSSSEEEEETTEEEEECEEECCCCSCTTSC
T ss_pred             CCccccccccceecccceeEEEEEEeecCCCccccccccccccCCceeeeeCeeeeEEeCCceeeEEEEecCeeeeCCEE
Confidence             12222    34889999999999999999999999442     247999999999999999999999999999999999


Q sp|P0DTC2|SPIK  565 FGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV--YSTGSNV  642 (1273)
Q Consensus       565 fgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrv--ystgsnv  642 (1273)
                      +..+.+.-.-++++ .++++..|+||..+.++++..|+  ++.++.||..++|+.+....+..+.+|.||+  +++..+.
T Consensus       613 ~~~s~sg~l~~fk~-~~g~~Y~V~PC~~v~~qvvv~~~--s~~~vgl~ts~nc~~v~~~~~~~~~s~~~~~~~~~~~~~~  689 (726)
T 6PZ8_F          613 FVYDAYQNLVGYYS-DDGNYYCLRACVSVPVSVIYDKE--TKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGP  689 (726)
T ss_dssp             EEECTTSCEEEEEC-TTSCEEEECCCCCEEEEEEEETT--TTEEEEECGGGCGGGCCSSCSSCSSSCCHHHHHHHTTSCC
T ss_pred             EEecCCCCEEEEEe-CCCCEEEEecCcccceeEEEeCC--CCCEEEEEecccCccccccceeeccCCchhcccccCCCCC
Confidence            97788888999999 99999999999999999999997  7889999999999999999999999999998  8888899


Q sp|P0DTC2|SPIK  643 FQTRAGCLIGAEHVNN-SYECDIPIGAGICASYQT  676 (1273)
Q Consensus       643 fqtragcligaehvnn-syecdipigagicasyqt  676 (1273)
                      |||-+||++||++.+. ..|||+|+|+|+||.|.+
T Consensus       690 fdT~~GCV~na~n~t~~V~~C~LplG~slC~~~~~  724 (726)
T 6PZ8_F          690 LQTPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDT  724 (726)
T ss_dssp             EECSSCEEETCCEEEEEESCCSSEEETTEEEECCC
T ss_pred             CCCchheeeeeecCCCceeeCCCCCCcceecCCCC
Confidence            9999999999999998 999999999999999976


No 23
>7BZ5_A Spike protein S1, Heavy chain; covid-19 antibody, VIRAL PROTEIN, VIRAL; HET: NAG; 1.84A {Severe acute respiratory syndrome coronavirus 2}
Probab=100.00  E-value=3.5e-52  Score=416.50  Aligned_cols=225  Identities=99%  Similarity=1.598  Sum_probs=190.3  Template_Neff=4.100

Q sp|P0DTC2|SPIK  319 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYAD  398 (1273)
Q Consensus       319 rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyad  398 (1273)
                      |+||...++|++++++.|+|.++|+|.++.++|+|.|+.++||..|+++|++..++++|+||||||+||.++||.+|++|
T Consensus         1 raqP~g~V~r~~~~~~~C~~~~~l~~~~~Psp~nW~R~~fsNCnfn~s~Lls~~~~~sf~C~gIspskL~~mCfsSvtiD   80 (229)
T 7BZ5_A            1 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYAD   80 (229)
T ss_dssp             ---------------CBCCHHHHHTCSSCCBGGGCEEEEECSEECCCHHHHSCSCCSEEEEESSCSTTCTTCEESEEEEE
T ss_pred             CcccceEEEECCCCCCCCChHHHhcCCCCCCchheEEeEEecCCCcHHHHhhcceeceeeEeCCCHHHHcccccCeeEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  399 SFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST  478 (1273)
Q Consensus       399 sfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagst  478 (1273)
                      .|.|+++++++++||++|.|++||||||+||+||+|+|+..+++..+.++|||++|.+++++++|||||++.++|+++.+
T Consensus        81 ~Faip~s~~~~L~~G~sG~i~~yNYKlp~~f~gC~l~~~~~~~~~~vt~~~~y~~rr~~~~~~~~f~~~~~~~~y~~~~~  160 (229)
T 7BZ5_A           81 SFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST  160 (229)
T ss_dssp             EEEEEGGGGGGSSTTCCSHHHHHTCCCCTTCCEEEEEEECHHHHCCTTCBCCCEEECCCSSCCCTTCCCCCCCCEECSSS
T ss_pred             EEEecccceeecCCCCCcHHHhcccCCCCCCCCeEEEEEeCCcccccccchHHHHHhccccCCCccccCCccceeccCCC
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999999999


Q sp|P0DTC2|SPIK  479 PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNF  543 (1273)
Q Consensus       479 pcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnf  543 (1273)
                      .|++..+.+|+.|+..|++|++.|+|+|+|+|+|++++...+++|||++|.+|++++++||||..
T Consensus       161 ~c~~~~~~~c~~p~~~~~~~~~~g~g~~c~g~~Vis~k~~~~s~TVC~~~~~T~~v~g~~~~~~~  225 (229)
T 7BZ5_A          161 PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFHH  225 (229)
T ss_dssp             CCTTCCBTTEECSEEECCBCTTBCGGGSEEEEEEEEEECC-CCCCEECCC---------------
T ss_pred             CCCCCCcccceeccCCCCCcccccccccceEEEEEEEEccCCCCccCCCCCCHHHhcCeeecCCC
Confidence            99955599999999999988899999999999999999999999999999999999999999964


No 24
>6YZ5_E Spike glycoprotein, Nanobody H11-D4; nanobody, complex, SARS-Cov-2, VIRAL PROTEIN; HET: NAG, EDO, ACT; 1.8A {Severe acute respiratory syndrome coronavirus 2}
Probab=100.00  E-value=3.5e-51  Score=405.64  Aligned_cols=205  Identities=99%  Similarity=1.601  Sum_probs=193.3  Template_Neff=3.900

Q sp|P0DTC2|SPIK  330 PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ  409 (1273)
Q Consensus       330 pnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrq  409 (1273)
                      ||+++.|+|.++|+|.++.|+|+|.|+.++||+.|+|+|+++.++++|+||||||+||.++||.+|++|.|.|+++++++
T Consensus         1 ~~~~~~C~~~~~l~~~~~Psp~nWeR~~fsNCnfNlS~Lls~~~~~sF~C~gIspskLa~mCfsSVtiD~Faip~s~~~d   80 (210)
T 6YZ5_E            1 PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ   80 (210)
T ss_dssp             ----CBCCHHHHHTCSSCCBGGGCEEEEECSEECCTHHHHTCSSCSEEEEESCCHHHHTTCEESEEEEEEEEEEGGGGGG
T ss_pred             CCCcCCCCHHHHhcCCCCCCchheEEeEEecCCCcHHHHhhcceeceeeeeCCCHHHHcccccCeeEEEEEEecccceee
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  410 IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY  489 (1273)
Q Consensus       410 iapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy  489 (1273)
                      ++||++|.|++||||||+||+||+|+|+..+++..+.++|||++|.+++++++||||+++.++|+++.+.|++..+.||+
T Consensus        81 Lq~G~sG~i~~yNYKlp~~f~gC~l~~~~~~~~vnvts~yny~~rr~~~~~~~~f~~~~~~~~y~~~~~~c~~~~~~~c~  160 (210)
T 6YZ5_E           81 IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY  160 (210)
T ss_dssp             SSTTCCSHHHHHTCCCCTTCCEEEEEEECHHHHCCTTCBCCCEEECCCSSCCCTTCCCCCCCCEECSSSCCTTCCBTTEE
T ss_pred             cCCCCCcHHHhcccCCCCCCCCeEEEEEeCCccccccccHHHHHHhcccCCCCccccccccchhccCCCCCCCCccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999955599999


Q sp|P0DTC2|SPIK  490 FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLV  534 (1273)
Q Consensus       490 fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlv  534 (1273)
                      .|+..|++|.+.|+|+|+|+|+|++++.+++|+||||||+|||.-
T Consensus       161 ~p~~~~~~~~~~g~g~~c~gv~Vis~k~~~~~~t~~~~~~~~~~~  205 (210)
T 6YZ5_E          161 FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNKH  205 (210)
T ss_dssp             CSEEECCBCTTSCGGGSEEEEEEEEEECCSSCCCEECCCCT----
T ss_pred             ecccCCCCCCcccCCccceEEEEEEEEcCCCceEEeCcccccCCC
Confidence            999998988899999999999999999999999999999999853


No 25
>6YLA_E SARS-CoV-2 RBD, Heavy Chain, Light; SARS-CoV-2 Spike protein, RBD, CR3022; HET: DMS, MLI, 1PE, NAG; 2.42A {Severe acute respiratory syndrome coronavirus 2}
Probab=100.00  E-value=3.8e-51  Score=406.04  Aligned_cols=207  Identities=98%  Similarity=1.577  Sum_probs=201.0  Template_Neff=3.900

Q sp|P0DTC2|SPIK  328 RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEV  407 (1273)
Q Consensus       328 rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdev  407 (1273)
                      .||++++.|+|.++|||.++.|+|+|.|+.++||+.|+|+|+++.++++|+||||||+||.++||.+|++|.|.|+++++
T Consensus         2 ~~~~~~~~C~~~~~l~~~~~Psp~nWeR~~fsNCnfNlS~Lls~~~~~sF~C~gIspskLa~mCfsSVtiD~Faip~s~~   81 (213)
T 6YLA_E            2 TGPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEV   81 (213)
T ss_pred             CCCCCcCCCCHHHHhcCCCCCCchheEEeEEecCCCcHHHHhhcceeceeeeeCCCHHHHcccccCeeEEEEEEecccce
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  408 RQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFN  487 (1273)
Q Consensus       408 rqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfn  487 (1273)
                      ++++||++|.|++||||||+||+||+|+|+..+++..+.++|||++|.+++++++||||+++.++|+++.+.|++..+.|
T Consensus        82 ~dLq~G~sG~i~~yNYKlp~~f~gC~l~~~~~~~~vnvts~yny~~rr~~~~~~~~f~~~~~~~~y~~~~~~c~~~~~~~  161 (213)
T 6YLA_E           82 RQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFN  161 (213)
T ss_pred             eecCCCCCcHHHhcccCCCCCCCCeEEEEEeCCccccccccHHHHHHhcccCCCCccccccccchhccCCCCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999555999


Q sp|P0DTC2|SPIK  488 CYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLV  534 (1273)
Q Consensus       488 cyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlv  534 (1273)
                      ||.|+..|++|.+.|+|+|+|+|+|++++.+++|+||||||+|||.-
T Consensus       162 c~~p~~~~~~~~~~g~g~~c~gv~Vis~k~~~~~~t~~~~~~~~~~~  208 (213)
T 6YLA_E          162 CYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNKH  208 (213)
T ss_pred             ceecccCCCCCCcccCCccceEEEEEEEEcCCCceEEeCcccccCCC
Confidence            99999998988899999999999999999999999999999999853


No 26
>6ZFO_A SARS-CoV-2 RBD, Nanobody, EY6A heavy; EY6a, RBD, Spike glycoprotein, SARS-CoV-2; HET: NAG;{Severe acute respiratory syndrome coronavirus 2}
Probab=100.00  E-value=2.3e-47  Score=375.21  Aligned_cols=194  Identities=100%  Similarity=1.634  Sum_probs=189.3  Template_Neff=4.100

Q sp|P0DTC2|SPIK  333 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP  412 (1273)
Q Consensus       333 tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiap  412 (1273)
                      |+.|+|.++|||.++.++|+|.||.++||+.|+|+|+++.++++|+||||+|+||.++||.+|++|.|.|+++++++++|
T Consensus         1 ~~~C~~~~~l~~~~~Psp~nWeR~~fsNCnfn~S~Lls~~~~~sf~C~gIspskL~~mCfsSvtiD~Faip~s~~~~L~~   80 (194)
T 6ZFO_A            1 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP   80 (194)
T ss_dssp             CCBCCCHHHHSCSSCCCSTTCEEEEECSEECCTHHHHHCCCCSEEEEESSCSGGGTTCCBSEEEEEEEEEEHHHHTTSST
T ss_pred             CCCCCHHHhhccCCCCCchheEEeEEecCCCcHHHHhhcceeceeeeeCCCHHHHcccccCeeEEEEEEecccceeecCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  413 GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL  492 (1273)
Q Consensus       413 gqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfpl  492 (1273)
                      |++|.|++||||||+||+||+|+|+..+++..+.++|||++|.+++++++||||+++.++|+++.+.|++..+.||+.|+
T Consensus        81 G~sG~i~~yNYKlp~~f~gC~l~~~~~~~~~nvt~~y~y~~~~~~~~~~~~f~~~~~~~~y~~~~~~c~~~~~~~c~~p~  160 (194)
T 6ZFO_A           81 GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL  160 (194)
T ss_dssp             TCCSHHHHHTCCCCTTCCEEEEEEECTTTSCCTTCBCCCEEECCCSSCCCTTCCCCCCCCEECSSSCCSSCCBTTEECSE
T ss_pred             CCCcHHHhcccCCCCCCCCeEEEEEeCCccccccccHHHHHHhcccCCCCccccccccchhccCCCCCCCCccccceecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999955599999999


Q sp|P0DTC2|SPIK  493 QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG  526 (1273)
Q Consensus       493 qsygfqptngvgyqpyrvvvlsfellhapatvcg  526 (1273)
                      ..|++|++.|+|+|+|+|+|++++.+|+|+||||
T Consensus       161 ~~~~~~~~~g~g~~c~g~~Vis~k~~~~~~t~~~  194 (194)
T 6ZFO_A          161 QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG  194 (194)
T ss_dssp             EECCBCTTSCTTTSEEEEEEEEEECCSSCCCEEC
T ss_pred             cCCCCCCcccCCccceEEEEEEEEcCCCcceecC
Confidence            9989888999999999999999999999999998


No 27
>2GHV_C Spike glycoprotein; SARS, S protein, VIRAL PROTEIN; 2.2A {SARS coronavirus} SCOP: d.318.1.1
Probab=100.00  E-value=3.9e-37  Score=305.00  Aligned_cols=197  Identities=71%  Similarity=1.226  Sum_probs=171.8  Template_Neff=4.000

Q sp|P0DTC2|SPIK  330 PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ  409 (1273)
Q Consensus       330 pnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrq  409 (1273)
                      |+++..|+|.++|+|.++.++|+|.|+.++||..|+|+|++..++++|+||||||+||.++||..|++|.|.|..+++++
T Consensus         4 ~~~~~~C~~~~~l~~~~~Psp~nWeR~~fsNCnfnls~Lls~~~~~sf~C~gIspskLa~mCfsSvtiD~Faip~s~~~~   83 (203)
T 2GHV_C            4 PNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQ   83 (203)
T ss_dssp             ---CCBCCCHHHHSCSSCCBGGGCEEEEECSSBCCGGGSCSCCBCSEEEEESCBGGGGGGGGCSSEEEEEEEEEGGGGGG
T ss_pred             CCccCCCCHHHHhcCCCCCCcceeEEeEEecCCCCHHHHhhccccceeeeeCCCHHHHcccccCeeEEEEEEeccchhhh
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  410 IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY  489 (1273)
Q Consensus       410 iapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy  489 (1273)
                      ++||++|-|++||||||+||+||+++|+-.+++..+.+|||+.++-.|...++|+++|++.-.+-.+..||....-.+|+
T Consensus        84 Lq~G~sG~i~~yNYKlp~~f~gC~l~~~~~~~~vn~t~~~nps~~~~r~~~~~~~~~~~c~c~~~~~~~~c~~~~~~~p~  163 (203)
T 2GHV_C           84 IAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYW  163 (203)
T ss_dssp             SSTTCCSHHHHHTCCCCTTCCEEEEEEECHHHHCBTTCBCCCEEECCCSSCCCTTCCCCCCCCBCTTSCCCCTTSTTCBC
T ss_pred             cCCCCCcHHHhcccCCCCCCcceEEEEEeCccccccCCccCcccchhcccccccCCCccCCCCCCCCCCCCCCCCccccc
Confidence            99999999999999999999999999999888888888788777665555689999999986664444566543333334


Q sp|P0DTC2|SPIK  490 FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP  527 (1273)
Q Consensus       490 fplqsygfqptngvgyqpyrvvvlsfellhapatvcgp  527 (1273)
                      .|-. +++..+.|+|+|+|+|+|++++.+.+|+||||-
T Consensus       164 ~~~~-~~~~~~~g~g~~c~g~~Vis~k~~~~~~t~~~~  200 (203)
T 2GHV_C          164 PLND-YGFYTTTGIGYQPYRVVVLSFELLNAPATVSGL  200 (203)
T ss_dssp             CEEE-CCBBSSSCGGGSEEEEEEEEECSGGSTCBTTCC
T ss_pred             CCCc-CCceecccCCccceEEEEEEEEcCCCceEEeee
Confidence            4322 556677899999999999999999999999994


No 28
>1WYY_A E2 Glycoprotein; membrane fusion, severe acute respiratory; 2.2A {SARS coronavirus} SCOP: h.3.3.1
Probab=100.00  E-value=2.3e-36  Score=288.46  Aligned_cols=99  Identities=89%  Similarity=1.142  Sum_probs=83.9  Template_Neff=2.300

Q sp|P0DTC2|SPIK  903 AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS  982 (1273)
Q Consensus       903 ayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndils  982 (1273)
                      +||+|++|++++||.||||+||+.||.|++.|+..++++++||.|+|||||++++||+.|+.||+.|||||||.++||.+
T Consensus         3 ~~RlNyvalqt~VLq~NQk~iA~sFN~Ai~~i~~gf~tts~AL~KIQdVVN~q~~aL~~Lt~QL~nNFgAISSSI~dIy~   82 (149)
T 1WYY_A            3 AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS   82 (149)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  983 RLDKVEAEVQIDRLITGRL 1001 (1273)
Q Consensus       983 rldkveaevqidrlitgrl 1001 (1273)
                      |||++||.+|+|||||||+
T Consensus        83 RLD~leAdaQVDRLItGR~  101 (149)
T 1WYY_A           83 RLDKVEAEVQIDRLITGGR  101 (149)
T ss_dssp             HHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999985


No 29
>1WYY_B E2 Glycoprotein; membrane fusion, severe acute respiratory; 2.2A {SARS coronavirus} SCOP: h.3.3.1
Probab=100.00  E-value=2.3e-36  Score=288.46  Aligned_cols=99  Identities=89%  Similarity=1.142  Sum_probs=81.9  Template_Neff=2.300

Q sp|P0DTC2|SPIK  903 AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS  982 (1273)
Q Consensus       903 ayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndils  982 (1273)
                      +||+|++|++++||.||||+||+.||.|++.|+..++++++||.|+|||||++++||+.|+.||+.|||||||.++||.+
T Consensus         3 ~~RlNyvalqt~VLq~NQk~iA~sFN~Ai~~i~~gf~tts~AL~KIQdVVN~q~~aL~~Lt~QL~nNFgAISSSI~dIy~   82 (149)
T 1WYY_B            3 AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILS   82 (149)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  983 RLDKVEAEVQIDRLITGRL 1001 (1273)
Q Consensus       983 rldkveaevqidrlitgrl 1001 (1273)
                      |||++||.+|+|||||||+
T Consensus        83 RLD~leAdaQVDRLItGR~  101 (149)
T 1WYY_B           83 RLDKVEAEVQIDRLITGGR  101 (149)
T ss_dssp             HHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999985


No 30
>5X4S_A Spike glycoprotein; SARS-CoV, spike, N-terminal domain, VIRAL; HET: NAG; 2.2A {Human SARS coronavirus}
Probab=100.00  E-value=1.1e-34  Score=297.96  Aligned_cols=261  Identities=56%  Similarity=1.068  Sum_probs=238.0  Template_Neff=4.200

Q sp|P0DTC2|SPIK   30 NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTT  109 (1273)
Q Consensus        30 nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgtt  109 (1273)
                      -|-.+|+||||..+||+..+-.|+||.++-++++-+|.       .--.+++++.||+||+++...+++|.-++|+||+|
T Consensus        21 ~s~~~G~yYPd~~~ysN~t~L~qglfp~~gs~~~~~~~-------~~~~y~~~~~~F~dGifv~v~~~~n~t~a~~fGst   93 (285)
T 5X4S_A           21 TSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHT-------INHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGST   93 (285)
T ss_pred             cccCceeEecCCeeeecceeeeecccCCCCCCccccCC-------cceecCCCccccCCeEEEEeeeecCCCCceeeeec
Confidence            34568999999999999999999999999999998555       23568899999999999999999999889999999


Q sp|P0DTC2|SPIK  110 LDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNL  189 (1273)
Q Consensus       110 ldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl  189 (1273)
                      .+.++++++|+++-+...|.+|.|+.|..|.+.++..-.|    --++..|..+.||+|+|.|+.|-+|...+-.+....
T Consensus        94 f~N~s~tviI~p~~~~~~it~C~~~vC~~p~~~~~~~~g~----~~~~~~f~~~~nc~~~~~~~nfT~d~~~~~~~~~~r  169 (285)
T 5X4S_A           94 MNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGT----QTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHL  169 (285)
T ss_pred             ccCCcEEEEEcCCCCcceEEEeEEEeCCCCeeEEcCCCCc----ccccceeeecCCCeEEEcccccccccCcceeeeeeE
Confidence            9999999999999999999999999999999998874333    567888999999999999999999988888888889


Q sp|P0DTC2|SPIK  190 REFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGY  269 (1273)
Q Consensus       190 refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgy  269 (1273)
                      ++|+|++.||+|-+|....+.+..+.+|.|+..|.|..-+|..|+||.|...+   |.|-++   .+.|..+.++|||++
T Consensus       170 ~~f~F~~~dG~f~~Y~~~~~~~~f~~~p~~~~~l~yy~vip~s~~~~~~~~~~---~~~~~~---~~~~~~~~~a~yV~~  243 (285)
T 5X4S_A          170 REFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAIL---TAFSPA---QDTWGTSAAAYFVGY  243 (285)
T ss_pred             EEEEEEeeCCeEEEEEecCCCcccccCCCccccceeeEeeeeecccccccCCC---CCCCCC---CcccceeeEEEEEEe
Confidence            99999999999999999888887999999999999999999999999997766   777776   678889999999999


Q sp|P0DTC2|SPIK  270 LQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT  307 (1273)
Q Consensus       270 lqprtfllkynengtitdavdcaldplsetkctlksft  307 (1273)
                      |.||+|||+|++||+|++||||+-||++|-||..||-.
T Consensus       244 L~~~t~Ll~fd~nG~It~AvDCa~~~~sELkCs~~~~~  281 (285)
T 5X4S_A          244 LKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSHH  281 (285)
T ss_pred             cceeeEEEeecCCCeEeeEEEcccCcchhceeeecCCC
Confidence            99999999999999999999999999999999998753


No 31
>5KWB_A Spike glycoprotein; Coronavirus spike protein, S1-CTD, receptor; HET: NAG, SUC; 1.91A {Human coronavirus HKU1 (isolate N1)}
Probab=99.95  E-value=1.2e-33  Score=297.87  Aligned_cols=271  Identities=23%  Similarity=0.387  Sum_probs=226.6  Template_Neff=3.700

Q sp|P0DTC2|SPIK  316 SNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV  395 (1273)
Q Consensus       316 snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnv  395 (1273)
                      |+|||||...++|.+.....|+|.++++|.+..+++.|.||.++||..|+|+|++......|+|||++|.||.+.||..|
T Consensus         1 S~y~vqP~g~V~r~~~~~~~C~~~~~l~~~~~Psp~nWeR~~fsNCnfNls~Lls~v~~~sf~C~~i~pskl~~mCfsSv   80 (371)
T 5KWB_A            1 SGFTVKPVATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSI   80 (371)
T ss_dssp             ----CCCCCSEEECCTTCCBCCHHHHHTCSEEECGGGCEEEEECSEEECHHHHHHHTEEEEEEEESSCGGGTTTCEESEE
T ss_pred             CCceeeeeeEEEEeCCCCCCCCHHHHHhCCCCCCccccEEeEEecCCCCHHHHHhhceeceeeeeCCCHHHhcccccCee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  396 YADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGG----NYNYLYRLFRKSNLKPFERDISTE  471 (1273)
Q Consensus       396 yadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvgg----nynylyrlfrksnlkpferdiste  471 (1273)
                      +.|.|.|..+..+++++|.+|-|++||||+|++|++|+++|+-..++..+.+    +||   |.++..+   |+......
T Consensus        81 tiD~Faip~s~~~dLq~g~sG~i~~~NYKid~~~~sC~l~y~~~~~nvt~t~~nps~~n---~ry~~~~---f~~~~hdv  154 (371)
T 5KWB_A           81 VLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWN---RRYGFNN---FNLSSHSV  154 (371)
T ss_dssp             EEEEEECCGGGGGGGSTTCCSHHHHHTCCCCSSSCEEEEEEEEEGGGCEEECCCCCHHH---HHTTCCC---CCCCTTEE
T ss_pred             EEEEEecCcccchhccCCCCcHhHhccccCCCCCCceEEEEEcccceeeecCCCcccch---hhccccC---cCccccce
Confidence            9999999999999999999999999999999999999999997665555443    454   2223222   55555555


Q sp|P0DTC2|SPIK  472 IYQ-----AGSTPCN---------------------------------------------GVEGFNCYFPLQSYGFQPTN  501 (1273)
Q Consensus       472 iyq-----agstpcn---------------------------------------------gvegfncyfplqsygfqptn  501 (1273)
                      +|.     ++.+-|.                                             +..++.|+-+...+.....-
T Consensus       155 vYs~~cf~~~~~yCPC~~p~~~~~c~~~~~~~~~~~~~t~~r~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  234 (371)
T 5KWB_A          155 VYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCESTTVLDHTDWCRCSCLPDPITAYDPRSCSQKKSLV  234 (371)
T ss_dssp             EEESCCEECCTTCCCSBCHHHHTTCCBSCCCBCBCCTTCCCCCEEEEEETTEEEEEEESSCSCTTTCSCGGGCSSEECCC
T ss_pred             eeeeeeeecCCCccCCCCccccccccCCCCCCCCCCCCccccccccccccccccccccccCCCCCcccCCCCccCceeee
Confidence            554     2222221                                             11234455454444445567


Q sp|P0DTC2|SPIK  502 GVGYQPYRVVVLSFEL-----------------------------------------LHAPATVCGP---KKSTNLVKNK  537 (1273)
Q Consensus       502 gvgyqpyrvvvlsfel-----------------------------------------lhapatvcgp---kkstnlvknk  537 (1273)
                      |+|++.+.+.|++.+.                                         .-.++|+|..   +..++++.++
T Consensus       235 gvg~~c~gl~v~~~kcg~~~~~~~~~C~C~~~af~gws~dsc~~~~~c~~f~n~~~~~~~T~t~cP~~~~~~~s~I~l~~  314 (371)
T 5KWB_A          235 GVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDV  314 (371)
T ss_dssp             CTTCCCCCCCBCGGGBSBTTCCTTSBCCBCGGGBCSEEEEECEETTEEEEEEEEEEESTTCSSEEECSSCCCCCCCCCSS
T ss_pred             ccccccceEEEeeeeccCCCCCCCcccccCCCccccccccccccCCceeeccceeccCCCCCCcCCCcccCCCceEEeCe
Confidence            9999999999999998                                         5668999998   6779999999


Q sp|P0DTC2|SPIK  538 CVNFNFNGLTGTGVLTE-SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF  592 (1273)
Q Consensus       538 cvnfnfngltgtgvlte-snkkflpfqqfgrdiadttdavrdpqtleilditpcsf  592 (1273)
                      ||++|..|.+|+|++++ +++.++..|.+..+.+.-..+++++.++++..|+||..
T Consensus       315 CVdYnIYG~tGqGvItnvT~~~~l~~~gL~yS~sgdl~~fk~~~tg~~Y~V~PC~~  370 (371)
T 5KWB_A          315 CVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYA  370 (371)
T ss_dssp             EEEEEETTEEEEEEEEEECGGGCCCSSSEEECTTSCEEEEECTTTCCEEEEECC--
T ss_pred             eeeEEeCCCeeeEEEEeccCceeecCCcEEEcCCCCEEEEEcCCCCcEEEEeeccc
Confidence            99999999999999999 99889999999999999999999999999999999975


No 32
>6LXT_F Spike protein S2; 2019-nCoV, HR1 and HR2 domain; HET: PG4; 2.9A {Severe acute respiratory syndrome coronavirus 2}
Probab=99.90  E-value=2.8e-28  Score=230.50  Aligned_cols=112  Identities=72%  Similarity=0.855  Sum_probs=97.2  Template_Neff=2.500

Q sp|P0DTC2|SPIK  910 GVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA  989 (1273)
Q Consensus       910 gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkvea  989 (1273)
                      |+|++||.||||+||+.||.|++.|++.++++++||.|+|||||++++||+.|++||+.|||||||.++||.+|||++||
T Consensus         1 gltt~VLq~NQk~iAnsFN~AignI~~gf~tts~AL~KIQdVVN~q~~aL~~Lt~QL~~NFgAISSSI~DIy~RLD~leA   80 (132)
T 6LXT_F            1 GVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVES   80 (132)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  990 EVQID-RLITGRLQSLQTYVTQQLIRAAEIRAS 1021 (1273)
Q Consensus       990 evqid-rlitgrlqslqtyvtqqliraaeiras 1021 (1273)
                      ..|+| |||||||.+|..||+|.+.+.++...-
T Consensus        81 daQvD~RLItGRLaaLna~v~q~~~~~~~~~~~  113 (132)
T 6LXT_F           81 GGRGGPDVDLGDISGINASVVNIQKEIDRLNEV  113 (132)
T ss_dssp             ---------CCCCTTCCCCCCCCHHHHHHHHHH
T ss_pred             cccCCcchhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 799999999999999999998887543


No 33
>6LXT_C 2019-nCoV S2 subunit; 2019-nCoV, HR1 and HR2 domain; HET: PG4; 2.9A {COVID-19 virus}
Probab=99.90  E-value=2.8e-28  Score=230.50  Aligned_cols=112  Identities=72%  Similarity=0.855  Sum_probs=100.9  Template_Neff=2.500

Q sp|P0DTC2|SPIK  910 GVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA  989 (1273)
Q Consensus       910 gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkvea  989 (1273)
                      |+|++||.||||+||+.||.|++.|++.++++++||.|+|||||++++||+.|++||+.|||||||.++||.+|||++||
T Consensus         1 gltt~VLq~NQk~iAnsFN~AignI~~gf~tts~AL~KIQdVVN~q~~aL~~Lt~QL~~NFgAISSSI~DIy~RLD~leA   80 (132)
T 6LXT_C            1 GVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVES   80 (132)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  990 EVQID-RLITGRLQSLQTYVTQQLIRAAEIRAS 1021 (1273)
Q Consensus       990 evqid-rlitgrlqslqtyvtqqliraaeiras 1021 (1273)
                      ..|+| |||||||.+|..||+|.+.+.++...-
T Consensus        81 daQvD~RLItGRLaaLna~v~q~~~~~~~~~~~  113 (132)
T 6LXT_C           81 GGRGGPDVDLGDISGINASVVNIQKEIDRLNEV  113 (132)
T ss_dssp             ------CCCCCCCTTCCCCCCCCHHHHHHHHHH
T ss_pred             cccCCcchhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 799999999999999999998887543


No 34
>6C6Z_A Spike protein, CDC2-C2 heavy chain; immune system, antibody, fusion glycoprotein; HET: NAG; 2.1A {Middle East respiratory syndrome-related coronavirus}
Probab=99.85  E-value=6.9e-26  Score=228.84  Aligned_cols=148  Identities=22%  Similarity=0.358  Sum_probs=108.8  Template_Neff=3.300

Q sp|P0DTC2|SPIK  319 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYAD  398 (1273)
Q Consensus       319 rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyad  398 (1273)
                      |+||...++|+++. ..|+|.++++ .++.++|.|.|+.++||..|+++|++...+++|+||||+|.||.++||..|++|
T Consensus         1 rAqP~g~V~r~~~~-~~C~~~~~l~-~~~Psp~nWeR~~fsNCnfNlS~Lls~v~v~sF~C~gIsPskLa~mCfsSVtiD   78 (231)
T 6C6Z_A            1 EAKPSGSVVEQAEG-VECDFSPLLS-GTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILD   78 (231)
T ss_dssp             ---------------CBCCCHHHHS-BCCCBGGGCEEEEECSSBCCHHHHHTTSEEEEEEEC-----------CCEEEEE
T ss_pred             CccceeEEEEecCC-CCCCchHHhc-CCCCCcceeEEEEEecCCccHHHHHhcceeeeeeecCCCHHHHhhhccceeeEE
Confidence            68999999999999 9999999999 999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  399 SFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEI  472 (1273)
Q Consensus       399 sfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdistei  472 (1273)
                      .|.|..++.++++||++|-|++||||+|+||+||+++|+-.+++..+.++.+|-|+..|.    +|..|-++|.
T Consensus        79 ~FaIp~s~~~~Lq~G~sG~i~~yNYKlp~~f~gC~l~y~~~~~~vnvt~p~~y~yia~r~----~~~~~~~~~~  148 (231)
T 6C6Z_A           79 YFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCS----RFLSDDRTEV  148 (231)
T ss_dssp             EEECCGGGGGGSSSSCCSHCCCCCCCCCSSSCEEEEEEECCTTCTTBCCCSEEEEEEEEE----EECTTSSCEE
T ss_pred             EEecChhhhhhccCCCCCchhhccccCCCCCCceEEEEEcCccccccCCCccceeeeeee----ccCCCCceEE
Confidence            999999999999999999999999999999999999999777666555566666655544    3334445554


No 35
>5XGR_H Spike protein S1; MERS-CoV, BatCoV HKU5, CTD, evolution; HET: NAG; 2.1A {Bat coronavirus HKU5}
Probab=99.85  E-value=9.7e-26  Score=224.72  Aligned_cols=181  Identities=21%  Similarity=0.336  Sum_probs=148.3  Template_Neff=4.000

Q sp|P0DTC2|SPIK  335 LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ  414 (1273)
Q Consensus       335 lcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgq  414 (1273)
                      .|+|.++++ .++.++|.|.|+.++||..|+++|++..++++|+||||+|.||.+.||..|++|.|.|..+..++++||+
T Consensus         2 ~C~~~~~l~-~~~Psp~nWeR~~fsNCnfNls~Lls~v~v~sF~C~~IspskLa~mCfsSvtiD~Faip~s~~~dLq~G~   80 (204)
T 5XGR_H            2 ECDFTPMLT-GTPPPIYNFKRLVFTNCNYNLTKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGS   80 (204)
T ss_dssp             BCCCGGGGS-BCCCCGGGCEEEEECSEEECHHHHHTTSEEEEEEEESCCHHHHSSCCBSEEEEEEEECCGGGGGGGSTTC
T ss_pred             CCCChhHhc-CCCCCccceeEEEEecCCCCHHHHHhhceeeeeEeeCCCHHHhcccccceeEEEEEEecCccchhcCCCC
Confidence            599999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  415 TGKIADYNYKLPDDFTGCVIAWNSNNLDSK--VGGNYNYLYRLFRKSN-----LKPFERDISTEIYQAGSTPCNGVEGFN  487 (1273)
Q Consensus       415 tgkiadynyklpddftgcviawnsnnldsk--vggnynylyrlfrksn-----lkpferdisteiyqagstpcngvegfn  487 (1273)
                      +|-|++||||+|++|+||+++|+-...+..  --++|+|+-|..+++.     +.++++|++.         |-... -+
T Consensus        81 sG~i~~yNYKld~s~~sC~l~~~~p~~~vnvt~ps~y~y~~~r~~~~~~~~~~~~~~~~~~cp---------c~~~~-~~  150 (204)
T 5XGR_H           81 AGAIVQFNYKQDFSNPTCRVLATVPQNLTTITKPSNYAYLTECYKTSAYGKNYLYNAPGAYTP---------CLSLA-SR  150 (204)
T ss_dssp             CSHHHHHTCCCCTTSCEEEEEEECCTTCCSBCCCSEEEEEEEEEEECSSSEEECCCCTTCCCT---------THHHH-TT
T ss_pred             CchhHhcccCCCCCCCccEEEEEcCchhcccCCccchheeeceeccccccccceeeCCCCccc---------ccccc-cC
Confidence            999999999999999999999995543321  2567777777777665     5555555543         11000 23


Q sp|P0DTC2|SPIK  488 CYF---PLQS----YGFQ--PTNGVGYQPYRVVVLSFELLHAPATVCGPK  528 (1273)
Q Consensus       488 cyf---plqs----ygfq--ptngvgyqpyrvvvlsfellhapatvcgpk  528 (1273)
                      |+-   |+..    +++|  ...|+|+|  +++|++++....+-|||.-.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~Vis~k~g~~~~~~~~~~  198 (204)
T 5XGR_H          151 GFSTKYQSHSDGELTTTGYIYPVTGNLQ--MAFIISVQYGTDTNSVCPMQ  198 (204)
T ss_dssp             CCSSTTCEEECSSEEEEEEEEECCSSCE--EEEEEEEECCSCTTSEEECC
T ss_pred             CcccCccccCCCcccccCeEeeecCccc--EEEEEEEEeCCCCCcccccc
Confidence            333   3222    4453  24588888  99999999999999999643


No 36
>4QZV_B Dipeptidyl peptidase 4 (E.C.3.4.14.5), Spike; 8-BLADED BETA-PROPELLER DOMAIN, ALPHA/BETA HYDROLASE; HET: NAG, BMA; 2.592A {Homo sapiens}
Probab=99.83  E-value=4.1e-25  Score=224.70  Aligned_cols=137  Identities=24%  Similarity=0.439  Sum_probs=111.3  Template_Neff=3.300

Q sp|P0DTC2|SPIK  319 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYAD  398 (1273)
Q Consensus       319 rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyad  398 (1273)
                      .+||...++|+++. ..|+|.++|+ .++.++|.|.|+.++||..|+++|++...+++|+||||||.||.++||..|++|
T Consensus         1 ~AqP~g~V~r~~~~-~~C~~~~~l~-~~~Psp~nWeR~~fsNCnfN~S~Lls~v~v~sF~C~gIsPskLa~mCfsSVtiD   78 (246)
T 4QZV_B            1 EASATGTFIEQPNA-TECDFSPMLT-GVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVD   78 (246)
T ss_dssp             ---------------CBCCCCTTTS-SCCCCGGGCEEEEECSCBBCHHHHHTTEEEEEEEEESSCTTGGGTCCBSEEEEE
T ss_pred             CceeeeEEEEcCCC-CCCCChHHhc-CCCCCcceeEEEEEecCCCcHHHHHhhceeeeeEecCCCHHHHcccccceeeEE
Confidence            37899999999999 9999999999 999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  399 SFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKV--GGNYNYLYRLFRK  458 (1273)
Q Consensus       399 sfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskv--ggnynylyrlfrk  458 (1273)
                      .|.|..+..++++||++|-|++||||||+||+||+++|+-.+ +..+  -++|+|+.|..++
T Consensus        79 ~FaIp~s~~~~Lq~G~sG~i~~yNYKlp~~f~gC~l~y~~~~-nvn~t~p~~y~yia~r~~~  139 (246)
T 4QZV_B           79 YFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLA-NVTITKPHAYGYISKCSRL  139 (246)
T ss_dssp             EEECCGGGGGGGSTTCCCHCCCCCCCCCCSSCEEEEEEEECT-TSCCCCCSEEEEEEEEEEE
T ss_pred             EEEcchhhhhhcCCCCCCchhhccccCCCCCCceEEEEEecc-ccccCCcccceeeeeeecC
Confidence            999999999999999999999999999999999999999555 2222  3455555554433


No 37
>4L3N_B S protein; beta-sheet fold, VIRAL PROTEIN; HET: NAG; 2.13A {Human betacoronavirus 2c Jordan-N3/2012}
Probab=99.81  E-value=2.3e-24  Score=216.33  Aligned_cols=124  Identities=20%  Similarity=0.356  Sum_probs=116.1  Template_Neff=3.200

Q sp|P0DTC2|SPIK  334 NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG  413 (1273)
Q Consensus       334 nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapg  413 (1273)
                      ..|+|.++++ .++.++|.|.|+.++||..|+++|++...+++|+||||||+||.++||..|++|.|.|..+++++++||
T Consensus         3 ~~C~~~~~l~-~~~PsP~nWeR~~fsNCnfNlS~Lls~v~v~sF~C~gIsPskLa~mCfsSVtiD~FaIp~s~~~~Lq~G   81 (216)
T 4L3N_B            3 VECDFSPLLS-GTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVS   81 (216)
T ss_dssp             CBCCCGGGGS-BCCCCGGGCEEEEECSEEECHHHHHHTSEEEEEEEESSCHHHHTTCCBSEEEEEEEECCGGGHHHHHTG
T ss_pred             CCCCchHHhc-CCCCCcceeEEEEEecCCccHHHHHhcceeeeeeecCCCHHHHhhhccceeeEEEEecChhhhhhccCC
Confidence            5799999999 999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  414 QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK  458 (1273)
Q Consensus       414 qtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrk  458 (1273)
                      ++|-|++||||+|+||+||+++|+-.+++..+.++.+|-|+..|.
T Consensus        82 ssG~i~~yNYKlp~df~gC~l~y~~~~~~vnvt~p~~y~yia~r~  126 (216)
T 4L3N_B           82 SAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCS  126 (216)
T ss_dssp             GGSHCCCCCCCCCSSSCEEEEEEECCTTCCSBCCCSEEEEEEEEE
T ss_pred             CCCchhhccccCCCCCCccEEEEEcCccccccCCCcccceeeeee
Confidence            999999999999999999999999877766666677777666555


No 38
>5YY5_B MERS-CoV RBD, Heavy chain, Light; MERS-CoV, spike glycorptotein, neutralizing antibody; HET: NAG; 2.8A {Middle East respiratory syndrome coronavirus}
Probab=99.81  E-value=3.5e-24  Score=214.39  Aligned_cols=124  Identities=20%  Similarity=0.356  Sum_probs=115.2  Template_Neff=3.300

Q sp|P0DTC2|SPIK  334 NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG  413 (1273)
Q Consensus       334 nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapg  413 (1273)
                      ..|+|.++++ .++.++|.|.|+.++||..|+++|++...+++|+||||+|.||.++||..|++|.|.|..+++++++||
T Consensus         2 ~~C~~~~~l~-~~~Psp~nWeR~~fsNCnfNlS~Lls~v~v~sF~C~gIsPskLa~mCfsSVtiD~FaIp~s~~~~Lq~G   80 (209)
T 5YY5_B            2 VECDFSPLLS-GTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVS   80 (209)
T ss_dssp             CBCCCGGGGS-BCCCBGGGCEEEEECSEEECHHHHHHTSEEEEEEEESSCHHHHTTCCBSEEEEEEEECCGGGGGGSSTT
T ss_pred             CCCCchHHhc-CCCCCcceeEEEEEecCCccHHHHHhcceeeeeeecCCCHHHHhhhccceeeEEEEecChhhhhhccCC
Confidence            4799999999 999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  414 QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK  458 (1273)
Q Consensus       414 qtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrk  458 (1273)
                      ++|-|++||||+|+||+||+++|+-.+++..+.++.+|-|+..|.
T Consensus        81 ~sG~i~~yNYKlp~~f~gC~l~y~~~~~~vnvt~p~~y~yia~r~  125 (209)
T 5YY5_B           81 SAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCS  125 (209)
T ss_dssp             CCSHCCCCCCCCCSSSCEEEEEEECCTTCTTBCCCSCEEEEEEEE
T ss_pred             CCCchhhccccCCCCCCccEEEEEcCccccccCCCcccceeeeee
Confidence            999999999999999999999999777666655666666665554


No 39
>4L72_B Dipeptidyl peptidase 4 (E.C.3.4.14.5), MERS-CoV; alpha/beta hydrolase beta-propeller, Glycolation, virus; HET: BMA, NAG; 3.005A {Homo sapiens}
Probab=99.81  E-value=4e-24  Score=213.42  Aligned_cols=123  Identities=20%  Similarity=0.365  Sum_probs=115.1  Template_Neff=3.300

Q sp|P0DTC2|SPIK  335 LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ  414 (1273)
Q Consensus       335 lcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgq  414 (1273)
                      .|+|.++++ .++.++|.|.|+.++||..|+++|++...+++|+||||+|+||.++||..|++|.|.|..+++++++||+
T Consensus         1 ~C~~~~~~~-~~~Psp~nWeR~~fsNCnfNlS~Lls~v~v~sF~C~gIsPskLa~mCfsSVtiD~FaIp~s~~~~Lq~G~   79 (204)
T 4L72_B            1 ECDFSPLLS-GTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSS   79 (204)
T ss_pred             CCChhHHhh-cCCCCcceeEEEEEecCCCCHHHHHhhceeeeeEeeCCCHHHHcccccCeeeEEEEeccccchhhcCCCC
Confidence            489999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  415 TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK  458 (1273)
Q Consensus       415 tgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrk  458 (1273)
                      +|-|++||||+|+||+||+++|+-.+++..+.++.+|-|+..|.
T Consensus        80 sG~i~~yNYKlp~~f~gC~l~y~~~~~~vnvt~p~~y~yia~r~  123 (204)
T 4L72_B           80 AGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCS  123 (204)
T ss_pred             CchHHhccccCCCCCCceEEEEEcCcccccCCCccccceeeeec
Confidence            99999999999999999999999877666666677777666555


No 40
>3R4D_D CEA-related cell adhesion molecule 1; immunoglobulin, beta-sandwich, mCEACAM1a - immunoglobulin; HET: NAG; 3.1A {Mus musculus}
Probab=99.80  E-value=5.2e-24  Score=219.92  Aligned_cols=240  Identities=20%  Similarity=0.268  Sum_probs=141.9  Template_Neff=4.700

Q sp|P0DTC2|SPIK   30 NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG---TKRFDNPVLPFNDGVYFASTEKSNI------  100 (1273)
Q Consensus        30 nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng---tkrfdnpvlpfndgvyfasteksni------  100 (1273)
                      -|-.+|+||||..++|++.+-.|+||.++-++.+-.-.   +|++-   --.+++++.||+||+++...+++|.      
T Consensus        30 vs~~~G~yYp~~rvysN~t~L~qglfp~~gs~~~~y~~---t~~~~~~~~~~y~~~~~~F~dGifv~v~~~~n~~~~~~~  106 (288)
T 3R4D_D           30 VSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLAL---TGTNSVSLSWFQPPYLSQFNDGIFAKVQNLKTSTPSGAT  106 (288)
T ss_dssp             ---------------------CEEECCCTTCCCEECCC---EESSEEEGGGSSTTTSEECTTEEEEEEECGGGGSCTTCC
T ss_pred             eecCeEEEEeCCeEEeceeeeecccccCCCCceEEEEe---ecCCCCccceecCCcchhcCCeEEEEeeecccCCCCccc
Confidence            45578999999999999999999999999988875422   34332   2467888999999999999998875      


Q sp|P0DTC2|SPIK  101 --IRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD  178 (1273)
Q Consensus       101 --irgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmd  178 (1273)
                        -..++||+|.+..+++++|+++-+...|.+|.|+.|..|.+.++..-+|.+..  +++. ..+.||+|.+. +.|-+|
T Consensus       107 ~~ypa~~fGstf~n~s~tvvI~P~~~~~~it~C~~~vC~~p~~~~~p~~g~~~~~--~~~~-~~~~~c~~~~~-~nfT~d  182 (288)
T 3R4D_D          107 AYFPTIVIGSLFGYTSYTVVIEPYNGVIMASVCQYTICQLPYTDCKPNTNGNKLI--GFWH-TDVKPPICVLK-RNFTLN  182 (288)
T ss_dssp             CCSCCEEEESSCSSSSEEEEEEEETTEEEEEEEECCBBSSCCEESSCCCTTCTTC--CSSB-CCSSCCCEEEE-EEEECC
T ss_pred             eecceEEEecccCCcceEEEEeCCCceEEEEEEEEEEcCCCeeEEccCCCCCcee--eeee-ecCCCCEEEEe-eeeccC
Confidence              46788999999999999999999999999999999999999888744332222  3445 67889999764 445444


Q sp|P0DTC2|SPIK  179 LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS  255 (1273)
Q Consensus       179 legkqgnfknlrefvfknidgyfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss  255 (1273)
                      ...+  .|.    |+|++.||.|-+|-.+...+.   .+.+| |+..+.+.                .+-|+..++   +
T Consensus       183 ~~~~--~~~----f~F~~~~G~f~~Y~~~~~~~~~f~f~~~~-g~~~~~yy----------------vip~~~~~~---~  236 (288)
T 3R4D_D          183 VNAD--AFY----FHFYQHGGTFYAYYADKPSATTFLFSVYI-GDILTQYY----------------VLPFICNPT---A  236 (288)
T ss_dssp             TTCS--EEE----EEEEEETTEEEEEEESSSSCCEEEEEEEC-SSCCCEEE----------------ECCEECCCS---S
T ss_pred             cChh--eee----EEEEEcCCEEEEEEECCCCCceeeeccee-ccccceeE----------------EeeeeecCC---C
Confidence            3321  122    999999999988877766553   55555 66555555                334444444   4


Q sp|P0DTC2|SPIK  256 SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLK  304 (1273)
Q Consensus       256 sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlk  304 (1273)
                      ++|  ..++|||++|.+|+|||+|++||.|++||||+-|+++|-||...
T Consensus       237 ~~~--~~~~~yV~~L~~r~yLl~Fd~nG~It~AvDCa~~~~sEL~~~~~  283 (288)
T 3R4D_D          237 GST--FAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTH  283 (288)
T ss_dssp             CSC--CCCCEEEEECCEEEC-----------------------------
T ss_pred             CCc--cccEEEEEeceeeeEEEeecCCCeEeEEEEcccCcccccccccC
Confidence            455  78899999999999999999999999999999999999999743


No 41
>4NJL_A S protein; six-helix-bundle, coronavirus, MERS-Cov, fusion inhibitor; HET: PGE; 2.3A {Middle East respiratory syndrome coronavirus}
Probab=99.79  E-value=1.2e-23  Score=199.38  Aligned_cols=122  Identities=42%  Similarity=0.571  Sum_probs=111.0  Template_Neff=2.500

Q sp|P0DTC2|SPIK  910 GVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA  989 (1273)
Q Consensus       910 gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkvea  989 (1273)
                      |+||+||.||||+||+.||.|+|.|++.+.++++||.|+|||||++++||+.|+.||+.|||||||.++||.+|||++||
T Consensus         2 gltq~VLq~NQk~iA~sFN~AignIq~gf~tts~AL~KIQdVVN~q~~aL~~Lt~QL~nNFgAISSSIqdIy~RLD~LeA   81 (131)
T 4NJL_A            2 GITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQ   81 (131)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  990 EVQIDRLI--TGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG 1035 (1273)
Q Consensus       990 evqidrli--tgrlqslqtyvtqqliraaeirasanlaatkmsecvlg 1035 (1273)
                      .+|++|+|  .||++-+.+    +|....-+..|+.-+..|..||...
T Consensus        82 Daqrl~~l~~~~~~~~~n~----~l~d~t~~~~s~~q~~~~~ne~~~~  125 (131)
T 4NJL_A           82 SGGRGGSIPNFGSLTQINT----TLLDLTYEMLSLQQVVKALNESYID  125 (131)
T ss_dssp             SSSCSCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HhcccchhhhhhhHHHHhH----hHHHHHHHHhhHHHHHHHHHHhccc
Confidence            99999988  888776665    6666666777887788888888653


No 42
>6QFY_A Spike glycoprotein; sialic acid binding, beta-sandwich, viral; HET: NAG, BMA; 2.97A {Porcine hemagglutinating encephalomyelitis virus}
Probab=99.78  E-value=2.6e-23  Score=214.69  Aligned_cols=236  Identities=20%  Similarity=0.276  Sum_probs=176.2  Template_Neff=4.800

Q sp|P0DTC2|SPIK   30 NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG---TKRFDNPVLPFNDGVYFASTEKSNII-----  101 (1273)
Q Consensus        30 nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng---tkrfdnpvlpfndgvyfasteksnii-----  101 (1273)
                      -|-.+|+||||..++|+..+-.|+||.++-++.+-.-.   +|++-   --.+++++.||+||+++...+++|.-     
T Consensus        29 vs~~~G~yYp~~r~ysN~t~L~qglfp~~gs~~~~y~~---t~~~~~~~~~~y~~~~~~F~dGifv~v~~~~n~~~~~~~  105 (288)
T 6QFY_A           29 VTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMAL---KGTRLLSTLWFKSPFLSPFNDGIFAKVKNSRFSKDGVIY  105 (288)
T ss_dssp             CTTSTTCBCCTTCCCCSEEEEEEEEEECTTCEEEECCC---EESSCEEGGGGSTTTSEECSSEEEEEEECBCCEETTEEC
T ss_pred             cccCceeEecCCceeccceeeeeceecCCCCCceeeee---ecCCCCCcceecCCCcccccCcEEEEeEEeecCCCCCce
Confidence            45568999999999999999999999999888875422   33332   34678889999999999999988863     


Q sp|P0DTC2|SPIK  102 ---RGWIFGTTLDSKTQSLLIVNNATNV-----V---IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEY  170 (1273)
Q Consensus       102 ---rgwifgttldsktqsllivnnatnv-----v---ikvcefqfcndpflgvyyhknnkswmesefrvyssannctfey  170 (1273)
                         -.++||+|.+..+++++|+++-+++     .   |.+|.|+.|..|...++..-.| +  --+++. ..+.+|+|.+
T Consensus       106 ~~yp~~~fGstf~n~s~tvvI~P~~~g~~~~~~~~~~it~C~~~vC~~p~~~~~p~~g~-~--~~~~~~-~~~~~c~~~~  181 (288)
T 6QFY_A          106 SEFPAITIGSTFVNSSHSIVVKPHTSFINGNLQGLLQISVCQYTMCEYPHTICHPNLGN-Q--RIELWH-YDTDVVSCLY  181 (288)
T ss_dssp             CBCCCEEEESSCSTTSCEEEEEEEE----EEEEEEEEEEEECCCEEEEEEEECCGGGCC-S--SCCEEE-CC----CSEE
T ss_pred             eecCceeeeccccCCceEEEEcCCCCCeeccccccceeeeeeEEecCCCeeEEcCCCCC-c--cceeeE-EecCCceEEE
Confidence               3677999999999999999998864     3   6799999999999988874443 3  234555 7789999976


Q sp|P0DTC2|SPIK  171 VSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRS  247 (1273)
Q Consensus       171 vsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrs  247 (1273)
                      . +.|-+|...+  .|.    |+|++.||.|-+|-.+...+.   .+.+| |+..+.+. -+|..++             
T Consensus       182 ~-~nfT~d~~~~--~~~----f~F~~~~G~f~~Y~~~~~~~~~f~f~~~~-~~~~~~yy-vip~~~~-------------  239 (288)
T 6QFY_A          182 K-RNFTYDVNAD--YLY----FHFYQEGGTFYAYFTDTGFVTKFLFKLYL-GTVLSHYY-VMPLTCD-------------  239 (288)
T ss_dssp             E-ECCBCCTTCS--EEE----EEEEEETTEEEEEEESSSSSBEEEEEEEC-SSCCCEEE-ECCEECS-------------
T ss_pred             e-eeeccccccc--eEE----EEEEEcCCeEEEEEeccCCcceeeecCCc-ccccceeE-EceecCC-------------
Confidence            4 4554444332  222    999999999988877766553   55566 66666665 2232222             


Q sp|P0DTC2|SPIK  248 YLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKS  305 (1273)
Q Consensus       248 yltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlks  305 (1273)
                        ++         ..++|||++|.+|+|||+|++||.|++||||+-|+++|-||..+|
T Consensus       240 --~~---------~~~~~yV~~L~~~~yLl~Fd~nG~It~AvDCa~~~~sEL~Cst~S  286 (288)
T 6QFY_A          240 --SA---------LSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSS  286 (288)
T ss_dssp             --S-------------CEEEEEEEEEEEEEEECTTCCEEEEEETTSCHHHHHHHHCCS
T ss_pred             --Cc---------cceeEEEEEcceeeEEEeecCCCeEeeEEEcccCcchhhccccCC
Confidence              22         668999999999999999999999999999999999999998776


No 43
>4H14_A Spike glycoprotein; beta-sandwich, sugar binding, VIRAL PROTEIN; HET: NAG; 1.55A {Bovine coronavirus}
Probab=99.78  E-value=3.5e-23  Score=214.01  Aligned_cols=235  Identities=21%  Similarity=0.266  Sum_probs=184.1  Template_Neff=4.700

Q sp|P0DTC2|SPIK   30 NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG---TKRFDNPVLPFNDGVYFASTEKSNI------  100 (1273)
Q Consensus        30 nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng---tkrfdnpvlpfndgvyfasteksni------  100 (1273)
                      -|-.+|+||||..++|+..+-.|+||.++-++.+-.-.   +|++-   --.+++++.||+||+++...+++|.      
T Consensus        29 vs~~~G~yYp~~rvysN~t~L~qglfp~~gs~~~~y~~---t~~~~~~~~~~y~~~~~~F~dGifv~v~~~~n~~~~~~~  105 (290)
T 4H14_A           29 VTNGLGTYYVLDRVYLNTTLLLNGYYPTSGSTYRNMAL---KGTLLLSRLWFKPPFLSDFINGIFAKVKNTKVIKKGVMY  105 (290)
T ss_dssp             CTTSTTCBCCTTCCCCSEEEEEEEEECCTTCCCEECCC---EESSCEEGGGGSTTTSEECSSEEEEEEECEEEEETTEEE
T ss_pred             cccCeeEEEeCCeEEeeeeeeecceecCCCCceeeeee---eeccccccccccCCccccccCcEEEEEEeecccCCCcee
Confidence            45578999999999999999999999999988875422   34332   2467888999999999999998875      


Q sp|P0DTC2|SPIK  101 --IRGWIFGTTLDSKTQSLLIVNNATNV-----V---IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEY  170 (1273)
Q Consensus       101 --irgwifgttldsktqsllivnnatnv-----v---ikvcefqfcndpflgvyyhknnkswmesefrvyssannctfey  170 (1273)
                        -..++||+|.+..+++++|+++-+++     .   |.+|.|+.|..|.+.++..-.| +  --+++. ..+.||+|.|
T Consensus       106 ~~ypa~~fGstf~n~s~tvvI~P~~~g~~~~~~~~~~it~C~~~vC~~p~~~~~p~~g~-~--~~~~~~-~~~~~c~~~~  181 (290)
T 4H14_A          106 SEFPAITIGSTFVNTSYSVVVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHPKLGN-K--RVELWH-WDTGVVSCLY  181 (290)
T ss_dssp             EECCCEEEESSCSTTSCEEEEEEEEEESSSSEEEEEEEEEECCCEEEEEEEECCGGGCC-S--SCCEEE-CCCSCCCEEE
T ss_pred             eecCeeEEeccccCCeeEEEEcCCCCCccchhcceeEeeeeeEEecCCCeEEEeccCCC-c--eeeeeE-EecCCceEEE
Confidence              46788999999999999999998864     3   6799999999999988874443 3  234455 7789999976


Q sp|P0DTC2|SPIK  171 VSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRS  247 (1273)
Q Consensus       171 vsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrs  247 (1273)
                      . +.|-+|...+  .|.    |+|++.||.|-+|-.+...+.   .+.+| |+..+.+. -+|..++.            
T Consensus       182 ~-~nfT~d~~~~--~~~----f~F~~~~G~f~~Y~~~~~~~~~f~f~~~~-~~~~~~yy-vip~~~~~------------  240 (290)
T 4H14_A          182 K-RNFTYDVNAD--YLY----FHFYQEGGTFYAYFTDTGVVTKFLFNVYL-GTVLSHYY-VLPLTCSS------------  240 (290)
T ss_dssp             E-EEEECCTTCS--EEE----EEEEEETTEEEEEEESSSSSBEEEEEEEC-SSCCCEEE-ECCEECSS------------
T ss_pred             e-eeeccccccc--eee----EEEEEeCCeEEEEEEccCcccceEeccee-eeecceeE-EceeecCC------------
Confidence            4 4554544332  222    999999999988877766553   55566 66666665 23333332            


Q sp|P0DTC2|SPIK  248 YLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLK  304 (1273)
Q Consensus       248 yltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlk  304 (1273)
                         +         ..++|||++|.+|+|||+|++||.|++||||+-|+++|-||...
T Consensus       241 ---~---------~~~~~yV~~L~~r~yLl~Fd~nG~It~AvDCa~~~~sEL~c~~~  285 (290)
T 4H14_A          241 ---A---------MTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTH  285 (290)
T ss_dssp             ---C---------CCCCEEEEEEEEEEEEEEECTTSCEEEEEETTSSHHHHHHHHSC
T ss_pred             ---c---------cceeEEEEeceeeeEEEEecCCCeEeEEEecccCcchhhhcccC
Confidence               1         66899999999999999999999999999999999999999753


No 44
>4MOD_B HR1 of S protein, LINKER; MERS-CoV, Viral envelope proteins, Spike; 1.901A {Human betacoronavirus 2c EMC/2012}
Probab=99.75  E-value=1.9e-22  Score=191.27  Aligned_cols=118  Identities=35%  Similarity=0.489  Sum_probs=66.4  Template_Neff=3.100

Q sp|P0DTC2|SPIK  918 ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV--EAEVQIDR  995 (1273)
Q Consensus       918 enqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkv--eaevqidr  995 (1273)
                      ||||+||+.||.|+|.|++.+.++++||.|+|||||+++++|+.|.+||..|||+|||.++||..|||++  ||.+|+||
T Consensus         2 ~NQk~iA~sFN~A~~~i~~~~~t~~~Al~kiQ~VVN~q~~aL~~l~~EL~knFkAISSsI~dIy~rld~~~~~ad~qvdr   81 (129)
T 4MOD_B            2 ENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDILVPRGSGGSGGSGGLEV   81 (129)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHhhhccCCCCCCccccchh
Confidence            7999999999999999999999999999999999999999999999999999999999999999999997  89999999


Q sp|P0DTC2|SPIK  996 LITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR 1039 (1273)
Q Consensus       996 litgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskr 1039 (1273)
                      ||+|||.+|.++++.--...++++    -...+.-||+..+.+-
T Consensus        82 LitgrL~~LNa~~~dl~~em~~l~----~vvk~LNes~idlkel  121 (129)
T 4MOD_B           82 LFQGPLTQINTTLLDLTYEMLSLQ----QVVKALNESYIDLKEL  121 (129)
T ss_dssp             -------CCCCCCCCCHHHHHHHH----HHHHHHHTTCCC----
T ss_pred             hcCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcHHHH
Confidence            999999999999876544333333    3667788888766543


No 45
>5X4R_A S protein; MERS-CoV, spike, N-terminal domain, VIRAL; HET: NAG; 1.5A {Middle East respiratory syndrome coronavirus}
Probab=99.71  E-value=2.2e-21  Score=204.51  Aligned_cols=263  Identities=21%  Similarity=0.314  Sum_probs=191.1  Template_Neff=4.200

Q sp|P0DTC2|SPIK   14 QCVNL-TTRTQLPPAYT----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG--T-------KRF   79 (1273)
Q Consensus        14 qcvnl-ttrtqlppayt----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng--t-------krf   79 (1273)
                      .|... ....-+++.++    -+-.+|+||||..++++..+-.|+||.+.-++.+-.-   ++|++.  +       -.+
T Consensus        12 ~C~~~~~~~~~~~~~~~~~idvs~~~G~yYp~~rvysN~tlL~qglfp~~gs~~~~y~---~~~~~~~~~~~~~~~~~~y   88 (342)
T 5X4R_A           12 ACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYV---YSAGHATGTTPQKLFVANY   88 (342)
T ss_dssp             BCCCEEECGGGGCCCCCCCCCGGGTTTCBCCTTSCCCSEEEEEEEEECCTTCCCEEEC---CEECCBCSSCBCSEEECSG
T ss_pred             ceEEeccCccccCCCCCcceecccCceeEeeCCeeEeeeeeeeeccccCCCCcceEEE---EEecCCCCCCCcceeeecC
Confidence            36665 23333444555    3446899999999999999999999999988887543   333333  2       356


Q sp|P0DTC2|SPIK   80 DNPVLPFNDGVYFASTEKSNIIRG-----------------WIFGTTLDSKT---Q------SLLIVNNATNVVI-----  128 (1273)
Q Consensus        80 dnpvlpfndgvyfasteksniirg-----------------wifgttldskt---q------sllivnnatnvvi-----  128 (1273)
                      +.+..||+||+++...+++|.-.+                 ++||+|.+...   +      +++|+++-++.++     
T Consensus        89 ~~~~~~F~dGifvkv~~~~n~t~~~~~~~~~~~~~~~~ypa~~fGstF~N~s~~~~~~~~~~tlvI~P~~~g~~~~~~~c  168 (342)
T 5X4R_A           89 SQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYC  168 (342)
T ss_dssp             GGCCEECTTCEEEEESTTTTSEEECSSSTTCEEEEECCCCCEEEESCEEECTTSCEEEECSEEEEEEEETTTTEEEEEEE
T ss_pred             CCChhhccCeEEEEEeeeeccCCCeeecCccccchhhcccceEEecccccCCCccceeecceEEEEecCCCCceeeeEee
Confidence            788999999999998887776443                 57999999777   6      8999999888765     


Q sp|P0DTC2|SPIK  129 --KVCEFQFCNDPFLGVYYHKNN---KSWMES---------EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVF  194 (1273)
Q Consensus       129 --kvcefqfcndpflgvyyhknn---kswmes---------efrvyssannctfeyvsqpflmdlegkqgnfknlrefvf  194 (1273)
                        ..++..-|..|..-+++--+.   -+|+.+         +++.|..+.||+|.+. +.|-+|.  +.+.|.    |.|
T Consensus       169 ~~~prtit~C~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~nc~f~~~-~nfT~d~--~~~wf~----~~F  241 (342)
T 5X4R_A          169 ILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYT-YNITEDE--ILEWFG----ITQ  241 (342)
T ss_dssp             EEEECCSBTSTTSTTCCCCCEEECHHHHSCTTCCCTTHHHHHHHHHEEEEEEEEEEE-EECCCCC--CCEEEE----EEE
T ss_pred             eeccCccccCCCCCeEeeeeecCCCCccCCCccccccccccchhhhcccCCcEEEEe-eecCcch--hhheEE----EEE
Confidence              333344566666655542221   345444         6778899999999875 3444443  333444    999


Q sp|P0DTC2|SPIK  195 KNID-GYFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYL  270 (1273)
Q Consensus       195 knid-gyfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgyl  270 (1273)
                      ++.| |.|-+|-.++..+.   ...+| |...|.+..-+|..++               ++   .+.|. ..++|||++|
T Consensus       242 ~~~~~G~f~~Y~~d~~~~~~f~f~~~p-g~~~l~yy~viprs~~---------------~~---~~~~~-~~~ayyV~~L  301 (342)
T 5X4R_A          242 TAQGVHLFSSRYVDLYGGNMFQFATLP-VYDTIKYYSIIPHSIR---------------SI---QSDRK-AWAAFYVYKL  301 (342)
T ss_dssp             ETTEEEEEESTTTCTTTCCBEEEEEEC-CCSCCCEEEECCEEEC---------------CC---GGGCC-EECCEEEEEC
T ss_pred             EeCCceeEEEEEEecCCCcceeccccc-cccccceeEeeeeeec---------------CC---cccce-eEEEEEEEEc
Confidence            9999 99999988776653   55566 7777777664554443               22   45566 7899999999


Q sp|P0DTC2|SPIK  271 QPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSF  306 (1273)
Q Consensus       271 qprtfllkynengtitdavdcaldplsetkctlksf  306 (1273)
                      .+|+|||.||+||.|++||||+-|+++|-||..+|-
T Consensus       302 ~~r~yLl~Fd~nG~It~AvDCa~d~~sELkCs~~~~  337 (342)
T 5X4R_A          302 QPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESH  337 (342)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGGCHHHHHHHC----
T ss_pred             ceeeEEEeccCCCeEEEEEecCCCcchhhcceecCC
Confidence            999999999999999999999999999999998875


No 46
>6J11_C Spike glycoprotein, VH of 7D10; MERS-CoV, Antibody, VIRAL PROTEIN; HET: MAN, NAG, BMA; 3.0A {Middle East respiratory syndrome-related coronavirus}
Probab=99.70  E-value=2.8e-21  Score=203.44  Aligned_cols=262  Identities=21%  Similarity=0.313  Sum_probs=192.3  Template_Neff=4.300

Q sp|P0DTC2|SPIK   14 QCVNL-TTRTQLPPAYT----NSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNG--T-------KRF   79 (1273)
Q Consensus        14 qcvnl-ttrtqlppayt----nsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng--t-------krf   79 (1273)
                      .|... ....-+++.++    -+-.+|+||||..++++..+-.|++|.+.-++.+-.-   ++|++.  +       -.+
T Consensus        12 ~C~~~~~~~~~~~~~~~~~idvs~~~G~yYp~~rvysN~tlL~qglfp~~gs~~~~y~---~~~~~~~~~~~~~~~~~~y   88 (336)
T 6J11_C           12 ACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYV---YSAGHATGTTPQKLFVANY   88 (336)
T ss_dssp             BCCCEEECGGGGCCCCCCCCCGGGTTTCBCCSSCCCCSEEEEEEEEECCTTCCCEEEC---CEECCBSSSCBCSEEECSC
T ss_pred             ceEEeccCccccCCCCCcceecccCceeEeeCCeeEeeeeeeeeccccCCCCcceEEE---EEecCCCCCCCcceeeecC
Confidence            36664 23333444554    3446899999999999999999999999988877543   233332  2       356


Q sp|P0DTC2|SPIK   80 DNPVLPFNDGVYFASTEKSNIIRG-----------------WIFGTTLDSKT---Q------SLLIVNNATNVVI-----  128 (1273)
Q Consensus        80 dnpvlpfndgvyfasteksniirg-----------------wifgttldskt---q------sllivnnatnvvi-----  128 (1273)
                      +.+..||+||+++...+++|.-.+                 ++||+|.+...   +      +++|+++-++.++     
T Consensus        89 ~~~~~~F~dGifvkv~~~~n~t~~~~~~~~~~~~~~~~ypa~~fGstf~N~s~~~~~~~~~~tlvI~P~~~g~~~~~~~c  168 (336)
T 6J11_C           89 SQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYC  168 (336)
T ss_dssp             TTCCEECTTCEEEEESTTTTSEEECSSSTTCEEEEECCCCCEEEESCEEECTTSCEEEECSEEEEEEEETTTTEEEEEEE
T ss_pred             CCChhhccCeEEEEEeeeeccCCCeeecCccccchhhcccceEEecccccCCCCcceeecceEEEEecCCCCceeeeEee
Confidence            788999999999999887776443                 57999999777   6      8999999888765     


Q sp|P0DTC2|SPIK  129 --KVCEFQFCNDPFLGVYYHKNN---KSWMES---------EFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVF  194 (1273)
Q Consensus       129 --kvcefqfcndpflgvyyhknn---kswmes---------efrvyssannctfeyvsqpflmdlegkqgnfknlrefvf  194 (1273)
                        +.++..-|..|..-+++.-+.   -+|+.+         +++.|..+.||+|.+.. .|-+|.  +.+.|.    |.|
T Consensus       169 ~~~~rtit~C~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~nc~f~~~~-nft~d~--~~~wf~----~~F  241 (336)
T 6J11_C          169 ILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTY-NITEDE--ILEWFG----ITQ  241 (336)
T ss_dssp             EEEECCSBTSTTSTTCCCCCEEECHHHHCSSSSCCTTHHHHHHHHHEEEEEEEEEEEE-ECCCCC--CCEEEE----EEE
T ss_pred             eeccCccccCCCCCeEeeeeecCCCCccCCCccccccccccchhhhcccCCcEEEEee-ecCcch--hhheEe----EEE
Confidence              333344566666655542221   345444         67788999999998753 444443  333443    999


Q sp|P0DTC2|SPIK  195 KNIDG-YFKIYSKHTPINL---VRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYL  270 (1273)
Q Consensus       195 knidg-yfkiyskhtpinl---vrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgyl  270 (1273)
                      ++.|| .|-+|--++..+.   ...+| |...|.+..-+|..++               ++   .+.|. ..++|||++|
T Consensus       242 ~~~~G~~f~~Y~~d~~~~~~f~f~~~~-g~~~l~yy~vip~s~~---------------~~---~~~~~-~~~ayyV~~L  301 (336)
T 6J11_C          242 TAQGVHLFSSRYVDLYGGNMFQFATLP-VYDTIKYYSIIPHSIR---------------SI---QSDRK-AWAAFYVYKL  301 (336)
T ss_dssp             ETTEEEEEESTTTCTTTCCBEEEEEEC-CCSCCCEEEECCEEEC---------------CC---STTCC-EECCEEEEEC
T ss_pred             EeCCeeEEEEEEEccCCCcceeccccc-ceeccceeEeeeeeec---------------CC---cccce-eEEEEEEEEc
Confidence            99999 9999887766653   55566 7777777664554443               22   45566 7899999999


Q sp|P0DTC2|SPIK  271 QPRTFLLKYNENGTITDAVDCALDPLSETKCTLKS  305 (1273)
Q Consensus       271 qprtfllkynengtitdavdcaldplsetkctlks  305 (1273)
                      .+|+|||.||+||.|++||||+-|+++|-||..+|
T Consensus       302 ~~~~yLl~Fd~nG~It~AvDCa~d~~sELkCst~S  336 (336)
T 6J11_C          302 QPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYES  336 (336)
T ss_dssp             EEEEEEEEECSSSCEEEEEETTSSHHHHHHHHHCC
T ss_pred             ceeeEEEeccCCCeEEEEEecCCCcchhheeeecC
Confidence            99999999999999999999999999999998764


No 47
>5GYQ_A Spike glycoprotein; bat coronavirus HKU9, putative receptor; HET: NAG; 2.1A {Bat coronavirus HKU9}
Probab=99.70  E-value=4.2e-21  Score=188.88  Aligned_cols=108  Identities=29%  Similarity=0.580  Sum_probs=104.5  Template_Neff=2.900

Q sp|P0DTC2|SPIK  332 ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA  411 (1273)
Q Consensus       332 itnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqia  411 (1273)
                      |...|+|.++++ .++.+++.|.|+.++||..|+++|++.....+|+||||||.||.+.||..|+.|.|.|..+..++++
T Consensus         2 ~~~~C~~~~~l~-~~~PsP~nWeR~~fsNCnFN~S~Llslv~v~sf~C~gISPskLasmCfsSVTiD~FaIp~s~~~~Lq   80 (176)
T 5GYQ_A            2 IQSYCTPPYSVL-QDPPQPVVWRRYMLYDCVFDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLF   80 (176)
T ss_dssp             CCEECCCCHHHH-HSCCCGGGCEEEEECSEEECGGGGTTSSCEEEEEEESSCHHHHTTSCBSEEEEEEEEECHHHHHHHH
T ss_pred             CCCCCCCChHhc-CCCCCCceeEEEEEeccCCchHHHHhhceeeeeeeeCCCHHHHhhcccceeEEEEEEeChHHHHhhc
Confidence            567899999999 9999999999999999999999999999999999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  412 PGQTGKIADYNYKLPDDFTGCVIAWNSNN  440 (1273)
Q Consensus       412 pgqtgkiadynyklpddftgcviawnsnn  440 (1273)
                      +|++|-|++||||+|+||+||+++|+-+.
T Consensus        81 ~GssG~i~~yNYKlp~~f~gC~l~y~l~~  109 (176)
T 5GYQ_A           81 NRVPDTFSLYNYALPDNFYGCLHAFYLNS  109 (176)
T ss_dssp             HTCCCHHHHHTCCCCTTCCEEEEEEEEEE
T ss_pred             CCCCcHHHhccccCCCCCCceEEEEEcCC
Confidence            99999999999999999999999997653


No 48
>5ZVK_A Human Coronavirus MERS HR1 motif; MERS, Spike protein, S2 domain; 3.31A {Middle East respiratory syndrome-related coronavirus}
Probab=99.68  E-value=7.3e-21  Score=169.61  Aligned_cols=79  Identities=56%  Similarity=0.816  Sum_probs=69.9  Template_Neff=3.000

Q sp|P0DTC2|SPIK  910 GVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988 (1273)
Q Consensus       910 gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkve  988 (1273)
                      |+|++||.||||+||+.||.|+|.|++.+.++++||.|+|||||++++||+.|+.||+.|||||||.++||.+|||++|
T Consensus         2 glt~~VL~~NQk~iA~sFN~A~~~i~~~~~t~~~AL~kiQ~VVN~q~~aL~~L~~qL~~NFgAISssI~dIy~RLd~le   80 (80)
T 5ZVK_A            2 GITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFRKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLE   80 (80)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999999986


No 49
>2BEZ_C E2 GLYCOPROTEIN; MEMBRANE FUSION, SEVERE ACUTE RESPIRATORY; 1.6A {SARS CORONAVIRUS} SCOP: h.3.3.1
Probab=99.63  E-value=8.5e-20  Score=162.03  Aligned_cols=77  Identities=88%  Similarity=1.101  Sum_probs=75.2  Template_Neff=3.000

Q sp|P0DTC2|SPIK  914 NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE  990 (1273)
Q Consensus       914 nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveae  990 (1273)
                      +||.||||+||+.||.|++.|+..++++++||.|+|||||++++||+.|+.||+.|||||||.++||.+|||++||.
T Consensus         1 ~VL~~NQk~iA~sFN~A~~~i~~~~~t~s~AL~kiQ~VVN~q~~aL~~L~~qL~~nFgAISssI~dIy~RLd~leAd   77 (77)
T 2BEZ_C            1 NVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE   77 (77)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999984


No 50
>6M1V_A spike protein; 2019-nCoV, spike protein, fusion core; 1.5A {Severe acute respiratory syndrome coronavirus 2}
Probab=99.60  E-value=2.8e-19  Score=168.19  Aligned_cols=98  Identities=56%  Similarity=0.575  Sum_probs=68.4  Template_Neff=3.400

Q sp|P0DTC2|SPIK  917 YENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRL  996 (1273)
Q Consensus       917 yenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrl  996 (1273)
                      .||||+||+.||.|+|.|++.++++++||.|+|||||++++||+.|+.||+.|||||||.+.      |++||.+|+||+
T Consensus         1 ~~NQk~lA~sFN~A~~~i~~~~~t~~~Al~kiQ~VVN~q~~aL~~L~~qL~~nf~aisssi~------~~lea~~q~drl   74 (119)
T 6M1V_A            1 MENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLLVPRGSGGSGGS------GGLEVLFQGPDV   74 (119)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhh------hhHHHhhcCCCc
Confidence            38999999999999999999999999999999999999999999999999999999999977      899999999999


Q sp|P0DTC2|SPIK  997 ITGRLQSLQTYVTQQLIRAAEIRA 1020 (1273)
Q Consensus       997 itgrlqslqtyvtqqliraaeira 1020 (1273)
                      ++|||..+..++++-....++++.
T Consensus        75 itgrLsaLNatvldL~~Ei~~Lqe   98 (119)
T 6M1V_A           75 DLGDISGINASVVNIQKEIDRLNE   98 (119)
T ss_dssp             ----CTTCCCCCCCCHHHHHHHHH
T ss_pred             CCCChHHhhHHHHHHHHHHHHHHH
Confidence            999999999999887666655543


No 51
>5ZUV_A Spike glycoprotein,EK1, Spike glycoprotein,inhibitor EK1; Human Coronavirus 229E, Spike protein; 2.21A {Human coronavirus 229E}
Probab=99.56  E-value=1.2e-18  Score=166.05  Aligned_cols=83  Identities=47%  Similarity=0.646  Sum_probs=77.2  Template_Neff=2.400

Q sp|P0DTC2|SPIK  914 NVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979 (1273)
Q Consensus       914 nvlyenqklianqfnsaigkiqds--------------lsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlnd  979 (1273)
                      +||.||||+||+.||.|||.|+..              ++++++||.|+|||||++++||+.|++||+.|||||||.++|
T Consensus         2 dVLq~NQkiiA~SFN~AignI~~aF~~vn~ai~qts~~~~Tva~AL~KIQdVVN~qg~AL~~Lt~QL~nNFqAISSSIqD   81 (133)
T 5ZUV_A            2 DVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQA   81 (133)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999966              566779999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  980 ILSRLDKVEAEVQIDRL  996 (1273)
Q Consensus       980 ilsrldkveaevqidrl  996 (1273)
                      |.+|||++||.++.++|
T Consensus        82 IY~RLD~leAd~~~gsl   98 (133)
T 5ZUV_A           82 IYDRLDTIQSGGRGGSL   98 (133)
T ss_dssp             HHHHHTCSSCCCCSCCC
T ss_pred             HHHHHHHHHhhhccCcc
Confidence            99999999999998776


No 52
>5YL9_A Spike glycoprotein; Spike protein, 6-helical bundle, post-fusion; 1.861A {Human coronavirus 229E}
Probab=99.49  E-value=1.1e-17  Score=151.89  Aligned_cols=74  Identities=51%  Similarity=0.726  Sum_probs=70.0  Template_Neff=2.900

Q sp|P0DTC2|SPIK  914 NVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979 (1273)
Q Consensus       914 nvlyenqklianqfnsaigkiqds--------------lsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlnd  979 (1273)
                      +||.||||+||+.||.|||.|+..              ++++++||.|+|||||++++||+.|.+||+.|||||||.++|
T Consensus         2 ~VLq~NQk~iA~sFN~Aigni~~af~~vn~ai~qts~~~~tva~AL~KiQ~VVN~q~~aL~~Lt~QL~~NF~AISsSI~d   81 (89)
T 5YL9_A            2 DVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQA   81 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999977              556679999999999999999999999999999999999999


Q sp|P0DTC2|SPIK  980 ILSRLDKV  987 (1273)
Q Consensus       980 ilsrldkv  987 (1273)
                      |.+|||++
T Consensus        82 Iy~RLd~l   89 (89)
T 5YL9_A           82 IYDRLDTI   89 (89)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999974


No 53
>1WDF_B E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion; 2.5A {Murine hepatitis virus} SCOP: h.3.3.1
Probab=99.16  E-value=2.7e-14  Score=131.27  Aligned_cols=62  Identities=60%  Similarity=0.836  Sum_probs=58.6  Template_Neff=2.400

Q sp|P0DTC2|SPIK  919 NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980 (1273)
Q Consensus       919 nqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndi  980 (1273)
                      |||.||+.||.|||.||+.++++++||.|+|||||++++||+.|+.||+.|||||||++.|.
T Consensus         1 NQkiLAnsFN~AignIq~af~tts~AL~KIQdVVN~qg~AL~~Lt~QL~~NFgAISSsi~d~   62 (95)
T 1WDF_B            1 NQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISDLSLDF   62 (95)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCCCCG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHchHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999875


No 54
>1ZVA_A E2 glycoprotein; SARS coronavirus, membrane fusion, S2; 1.5A {SARS coronavirus} SCOP: h.3.3.1
Probab=99.05  E-value=1.7e-13  Score=121.91  Aligned_cols=58  Identities=66%  Similarity=0.811  Sum_probs=47.6  Template_Neff=4.100

Q sp|P0DTC2|SPIK 1144 ELDSFKEELDKYFKNHTSPDVDLGD-----ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ 1201 (1273)
Q Consensus      1144 eldsfkeeldkyfknhtspdvdlgd-----isginasvvniqkeidrlnevaknlneslidlq 1201 (1273)
                      .|..|++||+|+||+++|.-.|+.+     ++++|+++++++.||+||+||+|+||||+|||+
T Consensus        15 ~L~~f~~eL~~~FkaiSSsi~di~~rl~grLs~lNa~vl~l~~Ei~~L~~vik~LN~S~IdLk   77 (77)
T 1ZVA_A           15 ALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhchhhhchhhhcCCCCCChhhhcHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            4566777777777777776655554     999999999999999999999999999999985


No 55
>5ZHY_D Spike glycoprotein,Spike glycoprotein; membrane fusion, broad-spectrum inhibitor design; 2.441A {Human coronavirus 229E}
Probab=98.79  E-value=7.4e-12  Score=121.97  Aligned_cols=59  Identities=47%  Similarity=0.667  Sum_probs=37.2  Template_Neff=2.300

Q sp|P0DTC2|SPIK  918 ENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV  976 (1273)
Q Consensus       918 enqklianqfnsaigkiqds--------------lsstasalgklqdvvnqnaqalntlvkqlssnfgaissv  976 (1273)
                      ||||+||+.||.|||.|+..              ++++|+||.|+|||||+.++||+.|.+||+.||||||+-
T Consensus         1 ~NQkiLAnSFN~AignIt~aF~~Vn~Ai~qts~~~~Tva~AL~KIQdVVN~Qg~ALs~Lt~QL~nNFqAIS~~   73 (148)
T 5ZHY_D            1 ENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQLVPRG   73 (148)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            69999999999999999966              555679999999999999999999999999999999974


No 56
>5XJK_A Spike protein S2; VIRAL PROTEIN; NMR {Human SARS coronavirus}
Probab=98.74  E-value=1.4e-11  Score=106.98  Aligned_cols=62  Identities=85%  Similarity=1.326  Sum_probs=57.8  Template_Neff=4.400

Q sp|P0DTC2|SPIK  777 NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYG  838 (1273)
Q Consensus       777 ntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqyg  838 (1273)
                      +..+++..+|+-+++|-+..|+||||+.+||.+++++.||+||||||+||.++|.||++.|.
T Consensus         3 ~~~~~~s~~~~~~~l~~~~~~~~fN~s~lL~~~~~~~~RSaIEDLLF~KV~t~~~G~v~~Yk   64 (65)
T 5XJK_A            3 NTREVFAQVKQMYKTPTLKYFGGFNFSQILPSPLKPTKRSFIEDLLFNKVTLADAGFMKQYG   64 (65)
T ss_dssp             TTGGGHHHHTTCCCCCCCSSSCCCCGGGSSCCCCCCCGGGGGGHHHHTTTSSTTHHHHHGGG
T ss_pred             cHHHHHHHHHHHhcCCcccccCCccccccCCCCCCCCCccHHHHHhccceeecCcchhhhhc
Confidence            34678899999999999999999999999999999999999999999999999999998885


No 57
>1ZV8_K E2 glycoprotein; SARS coronavirus, membrane fusion, S2; 1.94A {SARS coronavirus} SCOP: h.3.3.1
Probab=98.55  E-value=1.2e-10  Score=98.26  Aligned_cols=50  Identities=82%  Similarity=0.987  Sum_probs=48.5  Template_Neff=3.100

Q sp|P0DTC2|SPIK  919 NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS  968 (1273)
Q Consensus       919 nqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlss  968 (1273)
                      |||+||+.||.||+.|++.++++++||.|+|||||++++||+.|..||+.
T Consensus         1 NQk~iA~sFN~Ai~~i~~g~~t~~~AL~KiQ~VVN~q~~aL~~Lt~qL~~   50 (50)
T 1ZV8_K            1 NQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSS   50 (50)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999999999999999999999999999999963


No 58
>2IEQ_B Spike glycoprotein; Human coronavirus  membrane fusion; 1.747A {Human coronavirus}
Probab=98.54  E-value=1.3e-10  Score=109.56  Aligned_cols=84  Identities=33%  Similarity=0.293  Sum_probs=64.1  Template_Neff=3.500

Q sp|P0DTC2|SPIK  921 KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISS-VLNDIL--------SRLDKVEAEV  991 (1273)
Q Consensus       921 klianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss-vlndil--------srldkveaev  991 (1273)
                      .+-.+.||.||+.||+.++++++||.|+|||||+.+++|+.|..||..||++|+. .+ ||.        +|+|+.|++.
T Consensus         7 t~a~~~fn~Ai~~i~~g~~tt~~AL~KIQ~VVN~q~~tL~~Ll~QL~nNF~Ais~~~l-difN~T~LNLT~Ei~~LE~ra   85 (109)
T 2IEQ_B            7 VASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSG-RGGNLTYLNLSSELKQLEAKT   85 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccCC-cchHhhhcchhHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999999999999999 67 999        9999999999


Q sp|P0DTC2|SPIK  992 QIDRLITGRLQSLQ 1005 (1273)
Q Consensus       992 qidrlitgrlqslq 1005 (1273)
                      +-=+-++-.||.+-
T Consensus        86 ~~L~~~~~eLq~~I   99 (109)
T 2IEQ_B           86 ASLFQTTVELQGLI   99 (109)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877653


No 59
>2FXP_A Spike glycoprotein; Prefusion Intermediate, Trimer, Coiled-coil, VIRAL; NMR {SARS coronavirus} SCOP: h.3.3.1
Probab=98.52  E-value=1.6e-10  Score=98.19  Aligned_cols=54  Identities=98%  Similarity=1.317  Sum_probs=52.8  Template_Neff=4.100

Q sp|P0DTC2|SPIK 1158 NHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIK 1211 (1273)
Q Consensus      1158 nhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyik 1211 (1273)
                      |||+|+.++.++..+|++++|++.||++|+++.|+||+++|||++|++||+|||
T Consensus         2 n~t~~~~~~~~l~~~N~t~LnLt~Ei~~Lq~~I~~LN~s~IdLe~Ln~~etYiK   55 (55)
T 2FXP_A            2 SHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIK   55 (55)
T ss_dssp             CSCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC
T ss_pred             CCCCCCCCCCccccccccccchHHHHHHHHHHHHHHhhcCCCHHHhccceeecC
Confidence            799999999999999999999999999999999999999999999999999998


No 60
>1WDG_B E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1
Probab=98.49  E-value=2.2e-10  Score=106.06  Aligned_cols=54  Identities=57%  Similarity=0.760  Sum_probs=48.6  Template_Neff=3.000

Q sp|P0DTC2|SPIK  919 NQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS--NFGA  972 (1273)
Q Consensus       919 nqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlss--nfga  972 (1273)
                      |||+||+.||.|||.||+.++++++||.|+|||||++++||+.|..||+.  |++.
T Consensus         1 NQk~iA~sFN~Aigni~~~f~~~~~AL~kiQ~VVN~q~~aL~~LtNQLS~~pn~~~   56 (94)
T 1WDG_B            1 NQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSLVPRGSG   56 (94)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            79999999999999999999999999999999999999999999999998  7777


No 61
>2BEQ_D E2 GLYCOPROTEIN; VIRAL PROTEIN, COILED COIL, MEMBRANE; HET: ACE; 1.6A {N/A}
Probab=98.41  E-value=5.2e-10  Score=93.68  Aligned_cols=47  Identities=98%  Similarity=1.271  Sum_probs=44.9  Template_Neff=3.400

Q sp|P0DTC2|SPIK 1166 LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1212 (1273)
Q Consensus      1166 lgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikw 1212 (1273)
                      ++|++.+|++++|++.||++|+++.|+||+|+|||++|++||+||||
T Consensus         2 ~~~l~~~N~t~LnLs~Ei~~Lq~~I~~LN~s~IdLe~Ln~~etYiKW   48 (48)
T 2BEQ_D            2 LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKX   48 (48)
T ss_dssp             CCSCTTCCCCCCCCHHHHHHHHHHHTTGGGGEECHHHHHHHHHHHC-
T ss_pred             CCCccccccccccHHHHHHHHHHHHHHHHhcCCCHHHhcccchhcCC
Confidence            67889999999999999999999999999999999999999999999


No 62
>2BEQ_E E2 GLYCOPROTEIN; VIRAL PROTEIN, COILED COIL, MEMBRANE; HET: ACE; 1.6A {N/A}
Probab=98.41  E-value=5.2e-10  Score=93.68  Aligned_cols=47  Identities=98%  Similarity=1.271  Sum_probs=44.3  Template_Neff=3.400

Q sp|P0DTC2|SPIK 1166 LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKW 1212 (1273)
Q Consensus      1166 lgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikw 1212 (1273)
                      ++|++.+|++++|++.||++|+++.|+||+|+|||++|++||+||||
T Consensus         2 ~~~l~~~N~t~LnLs~Ei~~Lq~~I~~LN~s~IdLe~Ln~~etYiKW   48 (48)
T 2BEQ_E            2 LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKX   48 (48)
T ss_dssp             -CTTTTCCCCCCCCHHHHHHHHHHHHTGGGTEEEHHHHHHHHHHHC-
T ss_pred             CCCccccccccccHHHHHHHHHHHHHHHHhcCCCHHHhcccchhcCC
Confidence            67889999999999999999999999999999999999999999999


No 63
>6LXT_F Spike protein S2; 2019-nCoV, HR1 and HR2 domain; HET: PG4; 2.9A {Severe acute respiratory syndrome coronavirus 2}
Probab=97.71  E-value=1.4e-07  Score=91.83  Aligned_cols=45  Identities=98%  Similarity=1.275  Sum_probs=36.7  Template_Neff=2.500

Q sp|P0DTC2|SPIK 1163 DVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE 1207 (1273)
Q Consensus      1163 dvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkye 1207 (1273)
                      .+..|.++.+||.|...|.|+.+|||||||||||||||||||||.
T Consensus        87 RLItGRLaaLna~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (132)
T 6LXT_F           87 DVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYG  131 (132)
T ss_dssp             ---CCCCTTCCCCCCCCHHHHHHHHHHHHHGGGGSCCCCC-----
T ss_pred             chhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhchHHHhHhcC
Confidence            467899999999999999999999999999999999999999994


No 64
>6LXT_C 2019-nCoV S2 subunit; 2019-nCoV, HR1 and HR2 domain; HET: PG4; 2.9A {COVID-19 virus}
Probab=97.71  E-value=1.4e-07  Score=91.83  Aligned_cols=45  Identities=98%  Similarity=1.275  Sum_probs=38.5  Template_Neff=2.500

Q sp|P0DTC2|SPIK 1163 DVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYE 1207 (1273)
Q Consensus      1163 dvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkye 1207 (1273)
                      .+..|.++.+||.|...|.|+.+|||||||||||||||||||||.
T Consensus        87 RLItGRLaaLna~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (132)
T 6LXT_C           87 DVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYG  131 (132)
T ss_dssp             CCCCCCCTTCCCCCCCCHHHHHHHHHHHHHGGGGCCCCCC-----
T ss_pred             chhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhchHHHhHhcC
Confidence            467899999999999999999999999999999999999999994


No 65
>4MOD_B HR1 of S protein, LINKER; MERS-CoV, Viral envelope proteins, Spike; 1.901A {Human betacoronavirus 2c EMC/2012}
Probab=97.52  E-value=4.8e-07  Score=88.04  Aligned_cols=64  Identities=33%  Similarity=0.482  Sum_probs=36.9  Template_Neff=3.100

Q sp|P0DTC2|SPIK 1142 QPELDSFKEELDKYFKNHTSPDVDL--------------------GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ 1201 (1273)
Q Consensus      1142 qpeldsfkeeldkyfknhtspdvdl--------------------gdisginasvvniqkeidrlnevaknlneslidlq 1201 (1273)
                      ...|..|++||+++||+++|.-.|+                    |.++.+|+++++++.|+.+|++|.|.||||.|||+
T Consensus        40 ~~aL~~l~~EL~knFkAISSsI~dIy~rld~~~~~ad~qvdrLitgrL~~LNa~~~dl~~em~~l~~vvk~LNes~idlk  119 (129)
T 4MOD_B           40 AQALSKLASELSNTFGAISASIGDILVPRGSGGSGGSGGLEVLFQGPLTQINTTLLDLTYEMLSLQQVVKALNESYIDLK  119 (129)
T ss_dssp             HHHHHHHHHC---------------------------------------CCCCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred             HHHHHHHHHHHHHHhCcchhhHHHhhhccCCCCCCccccchhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence            3568899999999999999987776                    45777999999999999999999999999999999


Q sp|P0DTC2|SPIK 1202 ELGK 1205 (1273)
Q Consensus      1202 elgk 1205 (1273)
                      ||-.
T Consensus       120 el~~  123 (129)
T 4MOD_B          120 ELLE  123 (129)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            9854


No 66
>1ZVB_A E2 glycoprotein; SARS coronavirus, membrane fusion, S2; 1.7A {SARS coronavirus} SCOP: h.3.3.1
Probab=97.29  E-value=1.9e-06  Score=69.03  Aligned_cols=34  Identities=100%  Similarity=1.192  Sum_probs=32.0  Template_Neff=3.100

Q sp|P0DTC2|SPIK  958 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV  991 (1273)
Q Consensus       958 alntlvkqlssnfgaissvlndilsrldkveaev  991 (1273)
                      ||+.|+.||+.|||||||.++||.+|||++||.+
T Consensus         1 al~~L~~qL~nnF~aISssI~di~~RLD~leA~~   34 (34)
T 1ZVB_A            1 ALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV   34 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5889999999999999999999999999999864


No 67
>1WDG_B E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1
Probab=97.10  E-value=5.1e-06  Score=77.92  Aligned_cols=47  Identities=30%  Similarity=0.468  Sum_probs=29.3  Template_Neff=3.000

Q sp|P0DTC2|SPIK 1156 FKNHTSPDVDLGD----ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQE 1202 (1273)
Q Consensus      1156 fknhtspdvdlgd----isginasvvniqkeidrlnevaknlneslidlqe 1202 (1273)
                      .-++++...++++    +++||++.+++++|+++|+||.|.||||.|||+|
T Consensus        44 LtNQLS~~pn~~~~~~~~~~iN~t~lDl~~Em~~lq~vvk~LNeS~IdLKe   94 (94)
T 1WDG_B           44 LLNQLSLVPRGSGGSGGSGGLNVTLLDLTYEMNRIQDAIKKLNESYINLKE   94 (94)
T ss_dssp             HHTTCCC-------------------CCHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHHhcCCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            4577777777777    9999999999999999999999999999999986


No 68
>6M1V_A spike protein; 2019-nCoV, spike protein, fusion core; 1.5A {Severe acute respiratory syndrome coronavirus 2}
Probab=96.99  E-value=8.6e-06  Score=78.78  Aligned_cols=49  Identities=86%  Similarity=1.074  Sum_probs=35.8  Template_Neff=3.400

Q sp|P0DTC2|SPIK 1157 KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGK 1205 (1273)
Q Consensus      1157 knhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgk 1205 (1273)
                      .+-+.+..++|+++.+|+++++++.||++|+||.|+||||+|||+||..
T Consensus        67 a~~q~drlitgrLsaLNatvldL~~Ei~~LqevIk~LN~S~IDLk~~~~  115 (119)
T 6M1V_A           67 VLFQGPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELHH  115 (119)
T ss_dssp             ------------CTTCCCCCCCCHHHHHHHHHHHHHGGGGSCCGGGSCC
T ss_pred             HhhcCCCcCCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHcccHHHhhc
Confidence            3456677888999999999999999999999999999999999999864


No 69
>2BEQ_C E2 GLYCOPROTEIN; VIRAL PROTEIN, COILED COIL, MEMBRANE; HET: ACE; 1.6A {N/A} SCOP: h.3.3.1
Probab=96.96  E-value=9.9e-06  Score=66.07  Aligned_cols=36  Identities=81%  Similarity=0.995  Sum_probs=34.2  Template_Neff=3.500

Q sp|P0DTC2|SPIK  932 GKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLS  967 (1273)
Q Consensus       932 gkiqdslsstasalgklqdvvnqnaqalntlvkqls  967 (1273)
                      +.||+.++++++||.|+|||||++++||+.|.+||+
T Consensus         2 ~~iq~gf~tta~AL~KIQ~VVN~qg~aL~~Lt~QL~   37 (38)
T 2BEQ_C            2 SQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLS   37 (38)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            568999999999999999999999999999999996


No 70
>5ZVM_c Human Coronavirus SARS HR1 motif; SARS, Spike protein, S2 domain; 3.3A {Human SARS coronavirus}
Probab=96.74  E-value=2.6e-05  Score=65.26  Aligned_cols=41  Identities=39%  Similarity=0.648  Sum_probs=38.1  Template_Neff=3.500

Q sp|P0DTC2|SPIK 1165 DLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGK 1205 (1273)
Q Consensus      1165 dlgdisginasvvniqkeidrlnevaknlneslidlqelgk 1205 (1273)
                      .++|+..+|++++|++.||++|+++.|+||+++|||++|++
T Consensus         4 ~~~~l~~~N~t~LnLt~Ei~~Lq~~Ik~LN~s~IDLe~Lnr   44 (44)
T 5ZVM_c            4 RGGSLDQINVTFLDLEYEMKKLEEAIKKLEESYIDLKELGG   44 (44)
T ss_dssp             HHHCCTTCCCCCCCCHHHHHHHHHHHHHHHTTCCCCCCCTT
T ss_pred             CCCChhhccccccchHHHHHHHHHHHHHHHhhcCCHHHhCC
Confidence            46788899999999999999999999999999999999874


No 71
>5ZVM_b Human Coronavirus SARS HR1 motif; SARS, Spike protein, S2 domain; 3.3A {Human SARS coronavirus}
Probab=96.74  E-value=2.6e-05  Score=65.26  Aligned_cols=41  Identities=39%  Similarity=0.648  Sum_probs=38.1  Template_Neff=3.500

Q sp|P0DTC2|SPIK 1165 DLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGK 1205 (1273)
Q Consensus      1165 dlgdisginasvvniqkeidrlnevaknlneslidlqelgk 1205 (1273)
                      .++|+..+|++++|++.||++|+++.|+||+++|||++|++
T Consensus         4 ~~~~l~~~N~t~LnLt~Ei~~Lq~~Ik~LN~s~IDLe~Lnr   44 (44)
T 5ZVM_b            4 RGGSLDQINVTFLDLEYEMKKLEEAIKKLEESYIDLKELGG   44 (44)
T ss_pred             CCCChhhcccccccHHHHHHHHHHHHHHHHhhccChHHhcC
Confidence            46788899999999999999999999999999999999874


No 72
>2BEZ_F E2 GLYCOPROTEIN; MEMBRANE FUSION, SEVERE ACUTE RESPIRATORY; 1.6A {SARS CORONAVIRUS}
Probab=96.44  E-value=8.7e-05  Score=61.42  Aligned_cols=42  Identities=100%  Similarity=1.270  Sum_probs=37.4  Template_Neff=4.100

Q sp|P0DTC2|SPIK 1160 TSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ 1201 (1273)
Q Consensus      1160 tspdvdlgdisginasvvniqkeidrlnevaknlneslidlq 1201 (1273)
                      ||+..++.++..+|++++|++.||++|+++.|+||+++|||+
T Consensus         1 ts~~p~~~~l~~~N~t~LnLt~Ei~~Lq~~I~~LN~slIdLe   42 (42)
T 2BEZ_F            1 TSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ   42 (42)
T ss_dssp             CCCCCCCCCCTTCCCCCCCCHHHHHHHHHHHHHTSTTSCCCC
T ss_pred             CCCCcCcccccccccccccHHHHHHHHHHHHHHHHhccccCC
Confidence            455566666889999999999999999999999999999985


No 73
>6LVN_B 2019-nCoV S2 subunit; 2019-nCoV, HR2 domain, VIRUS, VIRAL; 2.47A {COVID-19 virus}
Probab=96.21  E-value=0.00019  Score=58.12  Aligned_cols=35  Identities=100%  Similarity=1.213  Sum_probs=32.6  Template_Neff=3.900

Q sp|P0DTC2|SPIK 1169 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1203 (1273)
Q Consensus      1169 isginasvvniqkeidrlnevaknlneslidlqel 1203 (1273)
                      +..+|++++|++.||++|+++.|+||+|+|||++|
T Consensus         2 ~~~~N~t~Lnlt~Ei~~lq~~I~~LN~s~IdLe~L   36 (36)
T 6LVN_B            2 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL   36 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcccccccccHHHHHHHHHHHHHHHHhhcCChhhC
Confidence            45689999999999999999999999999999875


No 74
>1ZV8_B E2 glycoprotein; SARS coronavirus, membrane fusion, S2; 1.94A {SARS coronavirus}
Probab=96.21  E-value=0.00019  Score=58.12  Aligned_cols=35  Identities=100%  Similarity=1.213  Sum_probs=26.7  Template_Neff=3.900

Q sp|P0DTC2|SPIK 1169 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1203 (1273)
Q Consensus      1169 isginasvvniqkeidrlnevaknlneslidlqel 1203 (1273)
                      +..+|++++|++.||++|+++.|+||+|+|||++|
T Consensus         2 ~~~~N~t~Lnlt~Ei~~lq~~I~~LN~s~IdLe~L   36 (36)
T 1ZV8_B            2 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL   36 (36)
T ss_dssp             ---CCCCCCCCHHHHHHHHHHHHHGGGGCC-----
T ss_pred             CcccccccccHHHHHHHHHHHHHHHHhhcCChhhC
Confidence            45689999999999999999999999999999875


No 75
>6LVN_A Spike protein S2; 2019-nCoV, HR2 domain, VIRUS, VIRAL; 2.47A {Severe acute respiratory syndrome coronavirus 2}
Probab=96.21  E-value=0.00019  Score=58.12  Aligned_cols=35  Identities=100%  Similarity=1.213  Sum_probs=32.0  Template_Neff=3.900

Q sp|P0DTC2|SPIK 1169 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL 1203 (1273)
Q Consensus      1169 isginasvvniqkeidrlnevaknlneslidlqel 1203 (1273)
                      +..+|++++|++.||++|+++.|+||+|+|||++|
T Consensus         2 ~~~~N~t~Lnlt~Ei~~lq~~I~~LN~s~IdLe~L   36 (36)
T 6LVN_A            2 ISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL   36 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcccccccccHHHHHHHHHHHHHHHHhhcCChhhC
Confidence            45689999999999999999999999999999875


No 76
>5YL9_B Spike glycoprotein; Spike protein, 6-helical bundle, post-fusion; 1.861A {Human coronavirus 229E}
Probab=91.73  E-value=0.063  Score=48.02  Aligned_cols=41  Identities=29%  Similarity=0.567  Sum_probs=34.5  Template_Neff=3.600

Q sp|P0DTC2|SPIK 1158 NHTSPDVDLGDISGINASVVNIQKEIDR--------------LNEVAKNLNESLIDLQ 1201 (1273)
Q Consensus      1158 nhtspdvdlgdisginasvvniqkeidr--------------lnevaknlneslidlq 1201 (1273)
                      .|+.||.+   +...|+.+.|+..||++              |.++.++||.+++||+
T Consensus         4 ~~t~pdl~---ld~yN~tiLNLt~EI~~Le~rs~~L~~~~~~Lq~~I~nLN~TlVDLE   58 (59)
T 5YL9_B            4 RGGVPDLV---VEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINSTLVDLK   58 (59)
T ss_dssp             -CCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             CCCCCCcc---cccccceecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            57888884   57789999999999999              7788888888888875


No 77
>5ZUV_A Spike glycoprotein,EK1, Spike glycoprotein,inhibitor EK1; Human Coronavirus 229E, Spike protein; 2.21A {Human coronavirus 229E}
Probab=89.53  E-value=0.16  Score=51.20  Aligned_cols=44  Identities=36%  Similarity=0.593  Sum_probs=41.1  Template_Neff=2.400

Q sp|P0DTC2|SPIK 1161 SPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELG 1204 (1273)
Q Consensus      1161 spdvdlgdisginasvvniqkeidrlnevaknlneslidlqelg 1204 (1273)
                      ..|+..|....||.....+.-|+.||.++.|+||||.|||.|+|
T Consensus        90 eAd~~~gsl~~~n~t~ldl~yem~~~~~~~k~l~~syi~lke~g  133 (133)
T 5ZUV_A           90 QSGGRGGSLDQINVTFLDLEYEMKKLEEAIKKLEESYIDLKELG  133 (133)
T ss_dssp             SCCCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHC
T ss_pred             HhhhccCccccceeeeHHHHHHHHHHHHHHHHHHHhhcchHhhC
Confidence            45788899999999999999999999999999999999999987


No 78
>6MAR_D Immunoglobulin G PGT151 Fab, Heavy; Fusion protein-Fab complex, MEMBRANE PROTEIN; HET: NAG, MAN, GAL, FUC, BMA;{Homo sapiens}
Probab=71.20  E-value=3  Score=42.93  Aligned_cols=29  Identities=34%  Similarity=0.603  Sum_probs=12.5  Template_Neff=7.100

Q sp|P0DTC2|SPIK 1199 DLQELGKYEQYIKW-PWYIWLGFIAGLIAI 1227 (1273)
Q Consensus      1199 dlqelgkyeqyikw-pwyiwlgfiagliai 1227 (1273)
                      |+++|.+.+....| +|-.|++.|..++.+
T Consensus       154 ~l~~l~~~~~l~~wf~~~~wl~~iki~i~i  183 (220)
T 6MAR_D          154 DLLALDKWASLWNWFDISNWLWYIKIFIMI  183 (220)
T ss_pred             HHHhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            44444444444333 334444444433333


No 79
>6DCQ_D Envelope glycoprotein gp160, Immunoglobulin G; HIV-1, Glycoprotein, Env, VIRAL PROTEIN; HET: NAG, GAL, BMA, FUC, MAN;{Human immunodeficiency virus 1}
Probab=68.19  E-value=3.9  Score=45.14  Aligned_cols=49  Identities=29%  Similarity=0.335  Sum_probs=25.2  Template_Neff=6.700

Q sp|P0DTC2|SPIK 1197 LIDLQELGKYEQYIKW-PWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK 1245 (1273)
Q Consensus      1197 lidlqelgkyeqyikw-pwyiwlgfiagliaivmvtimlccmtsccsclk 1245 (1273)
                      ..|++++.+......| .+..|++.|-.+|.||+..|.|-|+..|.+|..
T Consensus       146 ~~~l~~l~~w~~~~~wf~i~~wl~yiki~i~iv~gli~lri~~~~~~~~~  195 (352)
T 6DCQ_D          146 EKDLLALDKWTNLWNWFGISNWLWYIRIFIMIVGGLIGLRIIFAVLSVIN  195 (352)
T ss_pred             HHHHHHhHhhhhhHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555554333 334455554444555555555655555555543


No 80
>6NIJ_B PGT145 Fab heavy chain, PGT145; HIV-1, antibody, glycoprotein, IMMUNE SYSTEM; HET: NAG, BMA; 5.7A {Homo sapiens}
Probab=68.17  E-value=3.9  Score=44.93  Aligned_cols=51  Identities=27%  Similarity=0.312  Sum_probs=26.1  Template_Neff=6.800

Q sp|P0DTC2|SPIK 1197 LIDLQELGKYEQYIKW-PWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGC 1247 (1273)
Q Consensus      1197 lidlqelgkyeqyikw-pwyiwlgfiagliaivmvtimlccmtsccsclkgc 1247 (1273)
                      ..|++++.+......| .|..|++.|-.++.||+..|.|-|+..|.+|...+
T Consensus       146 ~~~l~~l~~w~~~~~wf~i~~w~~yiki~i~iv~gli~lrii~~~~~~~~~~  197 (345)
T 6NIJ_B          146 EQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRI  197 (345)
T ss_pred             HHHHHHHHHhhhHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555554443 34445555544555555556666655555554443


No 81
>1WDF_B E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion; 2.5A {Murine hepatitis virus} SCOP: h.3.3.1
Probab=63.13  E-value=5.7  Score=39.08  Aligned_cols=56  Identities=27%  Similarity=0.481  Sum_probs=44.4  Template_Neff=2.400

Q sp|P0DTC2|SPIK 1144 ELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQE 1202 (1273)
Q Consensus      1144 eldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqe 1202 (1273)
                      .|......|.+-|..-.|.   +.|...||.....+--|+.|+..+.|.||||.|||.|
T Consensus        40 AL~~Lt~QL~~NFgAISSs---i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (95)
T 1WDF_B           40 ALNNLLNQLSNRFGAISDL---SLDFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKE   95 (95)
T ss_dssp             HHHHHHHHHHHHTCC--CC---CCCGGGCCCCCCCCHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHHHHHHHHhHchHHHH---HHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            4555666777777666553   5667788999999999999999999999999999975


No 82
>6GY6_C XaxA, XaxB; bacterial toxin, pore forming-toxins, TOXIN; 4.0A {Xenorhabdus nematophila ATCC 19061}
Probab=57.97  E-value=8.2  Score=41.00  Aligned_cols=24  Identities=17%  Similarity=0.426  Sum_probs=14.9  Template_Neff=9.300

Q sp|P0DTC2|SPIK 1172 INASVVNIQKEIDRLNEVAKNLNE 1195 (1273)
Q Consensus      1172 inasvvniqkeidrlnevaknlne 1195 (1273)
                      +++.+..++++|++|++-.+.++.
T Consensus       232 l~~~i~~L~~~I~~l~~~I~~~~~  255 (424)
T 6GY6_C          232 LSTTIKDLQSKIDEKNKEIDQFQK  255 (424)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777777666555443


No 83
>6OJ7_A Fusion glycoprotein F0; Fusion protein, fusion inhibitor, six-helix; 1.45A {N/A}
Probab=57.49  E-value=8.5  Score=34.15  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=22.5  Template_Neff=4.500

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++-|+.++||.+|.+
T Consensus        17 TNeAV~~L~~g~~~l~~Av~~iQd~IN~~   45 (53)
T 6OJ7_A           17 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQ   45 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            36778888888888888888888877753


No 84
>1G2C_W TWO HEPTAD REPEATS OF HRSV; membrane fusion, pneumovirus, HRSV, Viral; 2.3A {Human respiratory syncytial virus} SCOP: h.3.2.1
Probab=57.47  E-value=8.5  Score=34.10  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=22.4  Template_Neff=4.400

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++-|+.++||.+|.+
T Consensus        17 TNeAV~~L~~g~~~~~~Av~~iQd~IN~~   45 (52)
T 1G2C_W           17 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQ   45 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46778888888888888888888877753


No 85
>6NYX_H Fusion glycoprotein F0; Fusion protein, fusion inhibitor, six-helix; HET: PEG, PG4; 1.85A {N/A}
Probab=57.31  E-value=8.6  Score=34.12  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=23.7  Template_Neff=4.500

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++-|+.++||.+|.+
T Consensus        17 TNeAV~~l~~g~~~~~~Av~~iQd~IN~~   45 (53)
T 6NYX_H           17 TNKAVQSVQSSIGNLIVAIKSVQDYVNKE   45 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47788888888888888888888888754


No 86
>6O40_A Fusion glycoprotein F0; Fusion protein, fusion inhibitor, six-helix; 1.2A {N/A}
Probab=57.31  E-value=8.6  Score=34.12  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=23.7  Template_Neff=4.500

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++-|+.++||.+|.+
T Consensus        17 TNeAV~~l~~g~~~~~~Av~~iQd~IN~~   45 (53)
T 6O40_A           17 TNKAVQSVQSSIGNLIVAIKSVQDYVNKE   45 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47788888888888888888888888754


No 87
>6GY8_A XaxA; bacterial toxin, pore forming-toxins, TOXIN; 2.5A {Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)}
Probab=54.96  E-value=10  Score=39.70  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=13.4  Template_Neff=9.700

Q sp|P0DTC2|SPIK 1173 NASVVNIQKEIDRLNEVAKNLN 1194 (1273)
Q Consensus      1173 nasvvniqkeidrlnevaknln 1194 (1273)
                      ++.+..++++|++|++-.+.++
T Consensus       233 ~~~i~~L~~~I~~l~~~I~~~~  254 (408)
T 6GY8_A          233 STTIKDLQSKIDEKNKEIDQFQ  254 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666777776666555443


No 88
>6PWU_E Envelope glycoprotein gp160, Antibody PG16; HIV-1, ENV, VIRAL PROTEIN; HET: NAG, MAN, BMA, FUC, GAL;{Human immunodeficiency virus 1}
Probab=52.04  E-value=12  Score=46.57  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=30.8  Template_Neff=5.500

Q sp|P0DTC2|SPIK 1196 SLIDLQELGKYEQYIKW-PWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCC 1248 (1273)
Q Consensus      1196 slidlqelgkyeqyikw-pwyiwlgfiagliaivmvtimlccmtsccsclkgcc 1248 (1273)
                      ...||++|.+....-.| .|-.|++.|-.+|.|+...|.|-++..|+++...++
T Consensus       651 nek~l~~Ld~w~~l~~Wf~it~Wl~yIKi~i~Iv~gliglrii~~v~~~v~~~r  704 (858)
T 6PWU_E          651 NEQELLELDKWANLWNWFDISNWLWYIKIFIMIVGGLIGLRIVFAVLSVINRVR  704 (858)
T ss_pred             HHHHHHchHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566667666665444 344566666666666666666666666666554443


No 89
>3EUH_B Chromosome partition protein mukF, MukE; Chromosome condensation, condensin, non-SMC subunit; HET: GLY; 2.9A {Escherichia coli}
Probab=52.03  E-value=12  Score=44.15  Aligned_cols=126  Identities=22%  Similarity=0.336  Sum_probs=81.9  Template_Neff=3.500

Q sp|P0DTC2|SPIK  858 LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLI--------ANQFNS  929 (1273)
Q Consensus       858 ltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqkli--------anqfns  929 (1273)
                      |+++-..+.+|+-.-..+| ..|.-...|--..-+-|.+    -.+--|.||-.+|.++-|.|..+        ...+.+
T Consensus       125 LS~~l~~va~eL~~a~~aA-~e~~~e~~W~~~V~apLky----SV~ei~d~Id~~QR~mDeqq~~vk~eIa~LL~qDW~~  199 (440)
T 3EUH_B          125 LSMQLSIVAGELKRAADAA-EEGGDEFHWHRNVYAPLKY----SVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRA  199 (440)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCCCHHHHCCCCCHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhcCCHHHHHhhccccccc----cHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455554444444 3333455676665555544    44567899999999999988543        345667


Q sp|P0DTC2|SPIK  930 AIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSS------NFGAISSVLNDILSRLDKVE  988 (1273)
Q Consensus       930 aigkiqdslsstasalgklqdvvnqnaqalntlvkqlss------nfgaissvlndilsrldkve  988 (1273)
                      ||..-+.-|+.|++.|..|||.+......|.++...+.+      ....+..++-++..+||.+.
T Consensus       200 AI~~Ce~LL~eTs~tLrELqdtL~aagd~lq~~Ll~IQ~~~~~~~~l~~v~~~~~~Lq~kLDrI~  264 (440)
T 3EUH_B          200 AISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRII  264 (440)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999888777766655432      22224445555555555544


No 90
>3MAW_A Fusion glycoprotein F0; Fusion protein, class I, paramyxovirus; HET: NAG, NDG; 3.5A {Newcastle disease virus}
Probab=50.68  E-value=13  Score=43.97  Aligned_cols=76  Identities=29%  Similarity=0.351  Sum_probs=26.5  Template_Neff=4.900

Q sp|P0DTC2|SPIK  875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       875 sallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      ..-++|.+..|-.+|.+.|.||--|..+.--..   -.++++  .-|.-...=|.|+.++++.++.++.|+.++||-+|.
T Consensus        83 ~~Rf~G~iig~~ALGVAtaaqiTA~vAl~~a~~---na~~I~--~lk~si~~TN~AV~~l~~~~~~~~~Av~~lQd~IN~  157 (483)
T 3MAW_A           83 QGRFIGAIIGSVALGVATAAQITAASALIQANQ---NAANIL--RLKESITATNEAVHEVTDGLSQLAVAVGKMQQFVND  157 (483)
T ss_dssp             -------------------------------CC---THHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeehHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888888888888876544321100   001111  011112345778888888888888888888888875


Q sp|P0DTC2|SPIK  955 N  955 (1273)
Q Consensus       955 n  955 (1273)
                      +
T Consensus       158 ~  158 (483)
T 3MAW_A          158 Q  158 (483)
T ss_dssp             H
T ss_pred             h
Confidence            4


No 91
>6EK7_A YaxA; pathogens, pore forming toxins, alpha-helical; HET: MPD; 1.8A {Yersinia enterocolitica}
Probab=49.86  E-value=14  Score=39.26  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=12.9  Template_Neff=9.300

Q sp|P0DTC2|SPIK 1172 INASVVNIQKEIDRLNEVAKNLN 1194 (1273)
Q Consensus      1172 inasvvniqkeidrlnevaknln 1194 (1273)
                      .+..+..++++|++|++-.+.++
T Consensus       234 ~~~~i~~L~~~I~~l~~~I~~~~  256 (410)
T 6EK7_A          234 MRKSIKELDEKIKEKRQRIEQLK  256 (410)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666665544443


No 92
>1SVF_C SV5 FUSION PROTEIN; PARAMYXOVIRUS, FUSION, SV5, COILED-COIL, Viral; 1.4A {Simian virus 5 (strain W3)} SCOP: h.3.2.1
Probab=49.38  E-value=14  Score=34.05  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=21.7  Template_Neff=4.200

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++.|+.++||.+|.+
T Consensus        26 TNeAV~~l~~g~~~~~~Av~~iQd~IN~~   54 (64)
T 1SVF_C           26 TNAAVADVVQATQSLGTAVQAVQDHINSV   54 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46677777888888888888888877653


No 93
>1SVF_A SV5 FUSION PROTEIN; PARAMYXOVIRUS, FUSION, SV5, COILED-COIL, Viral; 1.4A {Simian virus 5 (strain W3)} SCOP: h.3.2.1
Probab=49.38  E-value=14  Score=34.05  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=21.7  Template_Neff=4.200

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++.|+.++||.+|.+
T Consensus        26 TNeAV~~l~~g~~~~~~Av~~iQd~IN~~   54 (64)
T 1SVF_A           26 TNAAVADVVQATQSLGTAVQAVQDHINSV   54 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46677777888888888888888877653


No 94
>2FYZ_E Fusion glycoprotein F0; Mumps virus fusion protein core; 2.2A {Mumps virus}
Probab=48.54  E-value=15  Score=33.83  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=22.0  Template_Neff=4.200

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      =|.|+.+++++++.++-|+.++||.+|.+
T Consensus        29 TNeAV~~l~~g~~~~~~Av~~iQd~IN~~   57 (63)
T 2FYZ_E           29 TNRAVFEVKEGTQRLAIAVQAIQDHINTI   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46777788888888888888888877753


No 95
>2B9B_B Parainfluenza Virus 5 F Protein; fusion protein, pre-fusion conformation, VIRAL; HET: NAG; 2.85A {Simian virus 5}
Probab=48.31  E-value=15  Score=43.73  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=40.5  Template_Neff=4.600

Q sp|P0DTC2|SPIK  875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       875 sallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      ..-++|.+..|-.+|.+.|.||--|..+.--..   -.++++  .-|.-...=|.|+.++++.++.++-|+.++||-+|.
T Consensus        79 ~~Rf~G~iig~~ALGVATaAqiTA~vAL~~a~~---na~~I~--~lk~si~~TN~AV~~l~~~~~~~~~Av~~iQd~IN~  153 (497)
T 2B9B_B           79 RRRFAGVVIGLAALGVATAAQVTAAVALVKANE---NAAAIL--NLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINS  153 (497)
T ss_dssp             --CCCSCCCCGGGGCEEEHHHHHHHHHHHHHHH---HHHHHT--TSHHHHHHSCCSECEEE--------EECSSHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788888888999998888876554321100   001110  001112245778888899999999999999988875


Q sp|P0DTC2|SPIK  955 N  955 (1273)
Q Consensus       955 n  955 (1273)
                      +
T Consensus       154 ~  154 (497)
T 2B9B_B          154 V  154 (497)
T ss_dssp             H
T ss_pred             c
Confidence            4


No 96
>5YZC_B glycoprotein F2, glycoprotein F1,measles virus; glycoprotein, viral protein, fusion protein; HET: NAG, 95C; 2.334A {Measles virus (strain Ichinose-B95a)}
Probab=47.22  E-value=16  Score=42.71  Aligned_cols=73  Identities=23%  Similarity=0.281  Sum_probs=47.9  Template_Neff=4.700

Q sp|P0DTC2|SPIK  878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       878 lagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      ++|.|..+..+|.+.|.||--|..+.---   --.++++  .-|.-...=|.|+.++++.++.++.|+.++||-+|.+
T Consensus         1 ~~g~~ig~~algvataaqita~~al~~a~---~na~~i~--~lk~si~~tn~AV~~L~~g~~~~~~AV~~lQd~IN~~   73 (419)
T 5YZC_B            1 FAGVVLAGAALGVATAAQITAGIALHQSM---LNSQAID--NLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINNE   73 (419)
T ss_dssp             --CEEECHHHHCCCCHHHHHHHHHHHHHS---CCHHHHH--HHHHHHHTCCCSEEEECCTTSCCEEEEETTHHHCCCC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888889988888887655432110   0011111  1111223458899999999999999999999999854


No 97
>1T98_B Chromosome partition protein mukF; WINGED HELIX, HELIX-TURN HELIX, DOMAIN; HET: MSE; 2.9A {Escherichia coli} SCOP: a.47.6.1, a.4.5.65
Probab=46.81  E-value=16  Score=41.26  Aligned_cols=104  Identities=23%  Similarity=0.322  Sum_probs=67.4  Template_Neff=3.500

Q sp|P0DTC2|SPIK  858 LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN--------QFNS  929 (1273)
Q Consensus       858 ltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklian--------qfns  929 (1273)
                      |+++-..+.+|+-.-..+|. .|.=-..|--..-|-|.+    -.+--|.||..+|-++-|.|..+.+        .+.+
T Consensus       125 LS~ql~~va~eL~~a~~AA~-e~gde~~W~~~V~apLky----SV~eifd~Id~~QR~mDeqQ~~vk~eIA~LL~~DW~~  199 (287)
T 1T98_B          125 LSMQLSIVAGELKRAADAAE-EGGDEFHWHRNVYAPLKY----SVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRA  199 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-SCCSHHHHCCCCCHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCHHHHHhhccccccc----cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            34444445555444434443 333345676665555544    3456789999999999999865443        3457


Q sp|P0DTC2|SPIK  930 AIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL  966 (1273)
Q Consensus       930 aigkiqdslsstasalgklqdvvnqnaqalntlvkql  966 (1273)
                      ||..-+.-|+.|++.|..|||........|.++...+
T Consensus       200 AI~~Ce~LL~eTs~tLrELqdtL~aagd~lq~~Ll~I  236 (287)
T 1T98_B          200 AISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI  236 (287)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999887776666554443


No 98
>1T98_A Chromosome partition protein mukF; WINGED HELIX, HELIX-TURN HELIX, DOMAIN; 2.9A {Escherichia coli} SCOP: a.47.6.1, a.4.5.65
Probab=46.81  E-value=16  Score=41.26  Aligned_cols=104  Identities=23%  Similarity=0.322  Sum_probs=70.3  Template_Neff=3.500

Q sp|P0DTC2|SPIK  858 LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN--------QFNS  929 (1273)
Q Consensus       858 ltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklian--------qfns  929 (1273)
                      |+++-..+.+|+-.-..+|. .|.=-..|--..-|-|.+    -.+--|.||..+|-++-|.|..+.+        .+.+
T Consensus       125 LS~ql~~va~eL~~a~~AA~-e~gde~~W~~~V~apLky----SV~eifd~Id~~QR~mDeqQ~~vk~eIA~LL~~DW~~  199 (287)
T 1T98_A          125 LSMQLSIVAGELKRAADAAE-EGGDEFHWHRNVYAPLKY----SVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRA  199 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCCHHHHHhhccccccc----cHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            34444445555444434443 333345676665555544    3456789999999999999865443        3457


Q sp|P0DTC2|SPIK  930 AIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQL  966 (1273)
Q Consensus       930 aigkiqdslsstasalgklqdvvnqnaqalntlvkql  966 (1273)
                      ||..-+.-|+.|++.|..|||........|.++...+
T Consensus       200 AI~~Ce~LL~eTs~tLrELqdtL~aagd~lq~~Ll~I  236 (287)
T 1T98_A          200 AISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI  236 (287)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence            8888899999999999999999887776666554443


No 99
>1G5G_F FUSION PROTEIN; fusion protein, NDV, Newcastle disease; HET: BMA, NAG; 3.3A {Newcastle disease virus} SCOP: f.12.1.1, h.3.2.1
Probab=45.56  E-value=18  Score=42.92  Aligned_cols=76  Identities=30%  Similarity=0.372  Sum_probs=15.9  Template_Neff=4.900

Q sp|P0DTC2|SPIK  875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       875 sallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      ..-++|.+..|-.+|.+.|.||--|..+.--..   -.++++  .-|.-...=|.|+.++++.++.++-|+.++||-+|.
T Consensus        83 ~~Rf~G~iig~~ALGVAtaAqiTA~vAl~~a~~---na~~I~--~lk~si~~TN~AV~~l~~~~~~~~~Av~~iQd~IN~  157 (481)
T 1G5G_F           83 QGRLIGAIIGGVALGVATAAQITAASALIQANQ---NAANIL--RLKESIAATNEAVHEVTNGLSQLAVAVGKMQQFVND  157 (481)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888889888888876544321100   001110  011112234778888888888888888888888875


Q sp|P0DTC2|SPIK  955 N  955 (1273)
Q Consensus       955 n  955 (1273)
                      +
T Consensus       158 ~  158 (481)
T 1G5G_F          158 Q  158 (481)
T ss_dssp             H
T ss_pred             h
Confidence            4


No 100
>5EVM_F Fusion glycoprotein F0; fusion protein, Nipah, prefusion, paramyxovirus; HET: MAN, NAG, MLI, BMA; 3.367A {Nipah virus}
Probab=45.38  E-value=18  Score=43.38  Aligned_cols=76  Identities=29%  Similarity=0.344  Sum_probs=44.9  Template_Neff=4.700

Q sp|P0DTC2|SPIK  875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       875 sallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      ..-++|.+..|-.+|.+.|.||--|..+.--..   -.+++.  .-|.-...=|.|+.++++.++.++.|+.++||-+|.
T Consensus       107 ~~RF~G~vig~vaLGVATaAqiTA~vAL~~a~~---na~~I~--~lk~si~~TN~AV~~l~~~~~~~~~Avq~iQd~IN~  181 (529)
T 5EVM_F          107 DVRLAGVIMAGVAIGIATAAQITAGVALYEAMK---NADNIN--KLKSSIESTNEAVVKLQETAEKTVYVLTALQDYINT  181 (529)
T ss_dssp             ------EEEEHHHHCSEEHHHHHHHHHHHHHHH---HHHHHH--TTHHHHHHCCSSEEECCCSSSSCCEEEETTHHHCCC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888899888888876554432110   001110  011112345788888888999999999999988876


Q sp|P0DTC2|SPIK  955 N  955 (1273)
Q Consensus       955 n  955 (1273)
                      +
T Consensus       182 ~  182 (529)
T 5EVM_F          182 N  182 (529)
T ss_dssp             C
T ss_pred             c
Confidence            4


No 101
>6T3F_F Fusion glycoprotein F0, Fab66 light; Fusion Protein, Glycoprotein, Antibody, Fab; HET: NAG; 3.2A {Nipah virus}
Probab=42.88  E-value=21  Score=42.66  Aligned_cols=76  Identities=29%  Similarity=0.344  Sum_probs=49.9  Template_Neff=4.700

Q sp|P0DTC2|SPIK  875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       875 sallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      ..-++|.+..|-.+|.+.|.||--|..+.--..   -.+++.  .-|.-...=|.|+.++++.++.++.|+.++||-+|.
T Consensus        85 ~~Rf~G~iig~~ALGVAtaAqiTAgvAL~~a~~---na~~I~--~lk~si~~TN~AV~~l~~g~~~~~~Avq~iQd~IN~  159 (502)
T 6T3F_F           85 DVRLAGVIMAGVAIGIATAAQITAGVALYEAMK---NADNIN--KLKSSIESTNEAVVKLQETAEKTVYVLTALQDYINT  159 (502)
T ss_dssp             CSSCCSCEECHHHHCSCCHHHHHHHHHHHHHHH---HHHHHH--TTHHHHHHCCSSEEEECSSSSSCEEEEETTHHHCCC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678888888888888888876544321100   011111  011112345889999999999999999999999886


Q sp|P0DTC2|SPIK  955 N  955 (1273)
Q Consensus       955 n  955 (1273)
                      +
T Consensus       160 ~  160 (502)
T 6T3F_F          160 N  160 (502)
T ss_dssp             C
T ss_pred             c
Confidence            4


No 102
>3N27_B Fusion glycoprotein F0, linker, Fusion; Fusion protein, Chimera protein, fusion; HET: CIT, TBU; 1.8A {Hendravirus, Nipahvirus}
Probab=42.74  E-value=21  Score=34.63  Aligned_cols=28  Identities=32%  Similarity=0.335  Sum_probs=18.2  Template_Neff=2.800

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      -|.|+.+++++++.++-|+.++||.+|.
T Consensus        18 TNeAV~eL~~gl~q~avAIqaIQd~IN~   45 (80)
T 3N27_B           18 TNEAVVKLQETAEKTVYVLTALQDYSGG   45 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3556666666666666666666666654


No 103
>1ZTM_C Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=42.53  E-value=21  Score=42.44  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=29.7  Template_Neff=4.800

Q sp|P0DTC2|SPIK  876 ALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       876 allagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      .-++|.|..|-.+|.+.|.||--|..+.-.-   --.++++  .-|.-...=|.|+.++++.++.++.|+.++||-+|.+
T Consensus        90 ~r~~g~iig~~algvataaqita~~al~~a~---~na~~i~--~lk~si~~tn~AV~~L~~g~~~~~~Avq~iQd~IN~~  164 (490)
T 1ZTM_C           90 KRFFGGVIGTIALGVATSAQITAAVALVEAK---QARSDIE--KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKE  164 (490)
T ss_dssp             ----------------------------CCC---CCCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3467778888888888888887654432110   0011111  1122223458899999999999999999999998864


No 104
>4GIP_D Fusion glycoprotein F2, Fusion glycoprotein; PIV5, viral fusion protein, membrane; HET: NAG; 2.0A {Simian virus 5}
Probab=42.00  E-value=22  Score=41.54  Aligned_cols=72  Identities=22%  Similarity=0.278  Sum_probs=47.3  Template_Neff=4.800

Q sp|P0DTC2|SPIK  878 LAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVL-YENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQN  955 (1273)
Q Consensus       878 lagtitsgwtfgagaalqipfamqmayrfngigvtqnvl-yenqklianqfnsaigkiqdslsstasalgklqdvvnqn  955 (1273)
                      ++|.+..|..+|.+.|.||--|..+.-      ..||.- ...-|.-...=|.|+.++++.++.++.|+.++||-+|.+
T Consensus         1 ~~g~~ig~~algvataaqita~~al~~------a~~na~~i~~lk~si~~tn~AV~~L~~g~~~~~~Av~~lQd~IN~~   73 (409)
T 4GIP_D            1 FAGVVIGLAALGVATAAQVTAAVALVK------ANENAAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSV   73 (409)
T ss_dssp             CCSCEECGGGGCEEEHHHHHHHHHHHH------THHHHHHHHTTHHHHHHCCCSEEEEEETTEEEEEEECTTHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            467888888899888888876554321      111110 000111223457889999999999999999999988754


No 105
>6H2E_Q AhlB; Tripartite pore-forming toxin, TOXIN; 2.35A {Aeromonas hydrophila}
Probab=41.72  E-value=22  Score=35.49  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=11.9  Template_Neff=9.500

Q sp|P0DTC2|SPIK 1173 NASVVNIQKEIDRLNEVAKNLNE 1195 (1273)
Q Consensus      1173 nasvvniqkeidrlnevaknlne 1195 (1273)
                      +..+..++++|++|++-.+.++.
T Consensus       128 ~~~i~~l~~~I~~l~~~i~~~~~  150 (274)
T 6H2E_Q          128 QATIAGLQSNLDGARQELDSLNK  150 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556555555544444


No 106
>5IJO_G Nuclear pore complex protein Nup155; Nuclear pore complex, Nucleocytoplasmic transport; 21.4A {Homo sapiens}
Probab=40.35  E-value=24  Score=42.67  Aligned_cols=55  Identities=18%  Similarity=0.345  Sum_probs=33.8  Template_Neff=5.300

Q sp|P0DTC2|SPIK 1133 VNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV 1189 (1273)
Q Consensus      1133 vnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnev 1189 (1273)
                      ..++-|+.|.+|+....|+||||+|....-.-++...+.  ..+.+|+++|++|...
T Consensus       239 sk~~K~~dLP~eIqk~VE~LdkfIK~QkqisdEIsr~Ss--~~l~kV~~DIe~L~q~  293 (599)
T 5IJO_G          239 SKALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSS--KAMLKVQEDIKALKQL  293 (599)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHH
T ss_pred             chhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHH
Confidence            346778888889988899999999988776666665553  3466777777766543


No 107
>1WP7_A fusion protein; Nipah Virus, Fusion Core, heptad; 2.2A {Nipah virus}
Probab=40.33  E-value=24  Score=34.77  Aligned_cols=28  Identities=32%  Similarity=0.322  Sum_probs=18.7  Template_Neff=2.700

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      -|.|+.+++++++.++-|+.++||-+|.
T Consensus        18 TNeAV~eL~~gl~qtavAIqaIQD~IN~   45 (89)
T 1WP7_A           18 TNEAVVKLQETAEKTVYVLTALQDYGGS   45 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            4677777888888888888888877763


No 108
>1WP8_C fusion; Hendra Virus, Fusion Core, heptad; 2.2A {Hendra virus}
Probab=39.60  E-value=25  Score=34.65  Aligned_cols=28  Identities=32%  Similarity=0.322  Sum_probs=18.4  Template_Neff=2.700

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      -|.|+.+++++++.++-|+.++||-+|.
T Consensus        18 TNeAV~eL~~gl~qtavAIqaIQD~IN~   45 (89)
T 1WP8_C           18 TNEAVVKLQETAEKTVYVLTALQDYGGS   45 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            4667777777777777777777777763


No 109
>6R1J_J AhlB; Tripartite pore-forming toxin, TOXIN; 1.92A {Aeromonas hydrophila J-1}
Probab=39.16  E-value=26  Score=34.77  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=12.5  Template_Neff=9.700

Q sp|P0DTC2|SPIK 1172 INASVVNIQKEIDRLNEVAKNLNE 1195 (1273)
Q Consensus      1172 inasvvniqkeidrlnevaknlne 1195 (1273)
                      ++..+..++++|+.|++-.+.++.
T Consensus       127 ~~~~i~~l~~~I~~l~~~I~~~~~  150 (272)
T 6R1J_J          127 LQATIAGLQSNLDGARQELDSLNK  150 (272)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566655555554444


No 110
>6C14_A Protocadherin-15, LHFPL tetraspan subfamily member; PCDH15, LHFPL5, protocadherin, tip link;{Mus musculus}
Probab=38.64  E-value=27  Score=35.39  Aligned_cols=26  Identities=35%  Similarity=0.680  Sum_probs=13.7  Template_Neff=10.000

Q sp|P0DTC2|SPIK 1108 NFYEPQIITTDNT--FVSGNCDVVIGIV 1133 (1273)
Q Consensus      1108 nfyepqiittdnt--fvsgncdvvigiv 1133 (1273)
                      ..|+-.+..+|+.  -.+..+.|.|-++
T Consensus        82 ~~~~l~V~A~D~~~~~~~~~~~v~I~V~  109 (337)
T 6C14_A           82 SYFKFQVIATDDYGKGLSGKADVLVSVV  109 (337)
T ss_dssp             CCEEEEEEEEHHHHTSCEEEEEEEECEE
T ss_pred             CeEEEEEEEEcCCCCCCCeEEEEEEEEe
Confidence            4556666667764  2334455555443


No 111
>5EJB_D Fusion glycoprotein F0; prefusion form, viral glycoprotein, ectodomain; HET: NAG, SO4; 3.2A {Hendra virus}
Probab=38.02  E-value=28  Score=41.68  Aligned_cols=76  Identities=28%  Similarity=0.344  Sum_probs=45.1  Template_Neff=4.700

Q sp|P0DTC2|SPIK  875 SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQ  954 (1273)
Q Consensus       875 sallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnq  954 (1273)
                      ..-++|.+..|..+|.+.|.||--|..+.--..   -.+++.  .-|.-...=|.|+.++++.++.++.|+.++||-+|.
T Consensus        82 ~~Rf~G~iig~~AlgVAtaaqita~vAl~~a~~---na~~i~--~lk~si~~tn~AV~~L~~g~~~~~~Avq~lQd~IN~  156 (501)
T 5EJB_D           82 DVKLAGVVMAGIAIGIATAAQITAGVALYEAMK---NADNIN--KLKSSIESTNEAVVKLQETAEKTVYVLTALQDYINT  156 (501)
T ss_dssp             -------CEEHHHHCSEEHHHHHHHHHHHHHHH---HHHHHH--TTHHHHHTCCSSEEEEECSSSCEEEEEETTHHHCCC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888888888888765543321100   001111  011112345889999999999999999999999886


Q sp|P0DTC2|SPIK  955 N  955 (1273)
Q Consensus       955 n  955 (1273)
                      +
T Consensus       157 ~  157 (501)
T 5EJB_D          157 N  157 (501)
T ss_dssp             C
T ss_pred             c
Confidence            4


No 112
>2M8R_A Syntaxin-1A; syntaxin, SNARE, Prefusion, membrane protein; NMR {Rattus norvegicus}
Probab=36.65  E-value=30  Score=29.72  Aligned_cols=12  Identities=8%  Similarity=0.033  Sum_probs=5.6  Template_Neff=9.700

Q sp|P0DTC2|SPIK 1211 KWPWYIWLGFIA 1222 (1273)
Q Consensus      1211 kwpwyiwlgfia 1222 (1273)
                      +|-|++.+++++
T Consensus        84 ~~~~~~~~~~~~   95 (109)
T 2M8R_A           84 RKKIMIIICCVI   95 (109)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            355555444333


No 113
>3HD7_B Vesicle-associated membrane protein 2, Syntaxin-1A; MEMBRANE PROTEIN, COILED-COIL, 4-HELICAL BUNDLE; HET: SO4, GGG; 3.4A {Rattus norvegicus}
Probab=36.65  E-value=30  Score=29.72  Aligned_cols=12  Identities=8%  Similarity=0.033  Sum_probs=5.6  Template_Neff=9.700

Q sp|P0DTC2|SPIK 1211 KWPWYIWLGFIA 1222 (1273)
Q Consensus      1211 kwpwyiwlgfia 1222 (1273)
                      +|-|++.+++++
T Consensus        84 ~~~~~~~~~~~~   95 (109)
T 3HD7_B           84 RKKIMIIICCVI   95 (109)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            355555444333


No 114
>5C3L_B Nucleoporin Nup54, MGC84997 protein, Nucleoporin; nucleoporin, heterotrimeric coiled coils, kink; 2.9A {Xenopus laevis}
Probab=34.34  E-value=35  Score=32.07  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=31.9  Template_Neff=8.500

Q sp|P0DTC2|SPIK 1131 GIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV 1189 (1273)
Q Consensus      1131 givnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnev 1189 (1273)
                      ++--+|-|+.|.|++....++|+++++....-.-++...+-  ..+..+..++++|..-
T Consensus         6 ~~~~~tkf~dLp~~~q~~l~~ld~~I~~q~~~~~el~~~~~--~~~~~i~~di~~l~~~   62 (142)
T 5C3L_B            6 EDSKALKDENLPQLLCQDVENFQKFVKEQKQVQEEISRMSS--KAMLKVQEDIKALKQL   62 (142)
T ss_dssp             ------------CCSGGGGGGGTHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHH
Confidence            34557889999999999999999999987766655555443  3566666666655443


No 115
>5G6U_A LANGERIN; CARBOHYDRATE BINDING PROTEIN, LANGERIN, CD207; HET: TRP, CL, YJM; 1.844A {HOMO SAPIENS}
Probab=32.97  E-value=38  Score=33.48  Aligned_cols=42  Identities=17%  Similarity=0.467  Sum_probs=25.7  Template_Neff=9.700

Q sp|P0DTC2|SPIK 1038 KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP 1090 (1273)
Q Consensus      1038 krvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfp 1090 (1273)
                      .....|..||....       |..|    |+....++|..|-..|.+-.+|..
T Consensus       123 ~~~~~c~~~w~~~~-------~~cy----~~~~~~~tw~~A~~~C~~~g~~L~  164 (261)
T 5G6U_A          123 DILQVVSQGWKYFK-------GNFY----YFSLIPKTWYSAEQFCVSRNSHLT  164 (261)
T ss_pred             cccccCCCCeEEEC-------CEEE----EEEeceeCHHHHHHHHHHcCCEee
Confidence            44567877776531       2211    222346788899999988766654


No 116
>3IPD_E Vesicle-associated membrane protein 2, Syntaxin-1A; MEMBRANE PROTEIN, COILED COIL, 4-HELICAL; 4.8A {Rattus norvegicus}
Probab=26.85  E-value=56  Score=28.69  Aligned_cols=9  Identities=33%  Similarity=0.386  Sum_probs=3.8  Template_Neff=8.400

Q sp|P0DTC2|SPIK 1212 WPWYIWLGF 1220 (1273)
Q Consensus      1212 wpwyiwlgf 1220 (1273)
                      +-|++.+++
T Consensus        68 ~k~~iii~~   76 (91)
T 3IPD_E           68 LKMMIILGV   76 (91)
T ss_dssp             HHHHHTTTT
T ss_pred             HHHHHHHHH
Confidence            344444443


No 117
>3HD7_A Vesicle-associated membrane protein 2, Syntaxin-1A; MEMBRANE PROTEIN, COILED-COIL, 4-HELICAL BUNDLE; HET: SO4, GGG; 3.4A {Rattus norvegicus}
Probab=26.85  E-value=56  Score=28.69  Aligned_cols=9  Identities=33%  Similarity=0.386  Sum_probs=3.8  Template_Neff=8.400

Q sp|P0DTC2|SPIK 1212 WPWYIWLGF 1220 (1273)
Q Consensus      1212 wpwyiwlgf 1220 (1273)
                      +-|++.+++
T Consensus        68 ~k~~iii~~   76 (91)
T 3HD7_A           68 LKMMIILGV   76 (91)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            344444443


No 118
>6BP2_B Envelope Glycoprotein GP1, Envelope Glycoprotein; Marburg, Ravn, Glycoprotein, Complex, VIRAL; HET: NAG, BMA, MAN; 3.172A {Marburg marburgvirus}
Probab=24.89  E-value=64  Score=35.25  Aligned_cols=40  Identities=13%  Similarity=0.088  Sum_probs=26.5  Template_Neff=4.200

Q sp|P0DTC2|SPIK  925 NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVK  964 (1273)
Q Consensus       925 nqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvk  964 (1273)
                      .+....+....++++.....+..+..+|-||..||.-|.-
T Consensus       122 ~~l~k~~N~Ts~ALs~L~~ql~SLr~vvLQNR~ALD~LLa  161 (202)
T 6BP2_B          122 CRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLT  161 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhHHHH
Confidence            3334444445555556666666678899999999987654


No 119
>6QD8_D Light chain, Virion spike glycoprotein,EBOV-GP1; Antibody, immune response, viral infection; HET: NAG, BMA;{Homo sapiens}
Probab=23.45  E-value=72  Score=33.90  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=21.5  Template_Neff=4.700

Q sp|P0DTC2|SPIK  931 IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVK  964 (1273)
Q Consensus       931 igkiqdslsstasalgklqdvvnqnaqalntlvk  964 (1273)
                      +....++++.....+..+..+|-||..||.-|.-
T Consensus        61 ~N~T~~aL~~L~~ql~Slr~vvLQNR~ALD~Ll~   94 (168)
T 6QD8_D           61 ANETTQALQLFLRATTELRTFSILNRKAIDFLLQ   94 (168)
T ss_dssp             HHHHHHHHHHHHHHCCCSEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence            3334444444445555567788999999887643


No 120
>4NJL_A S protein; six-helix-bundle, coronavirus, MERS-Cov, fusion inhibitor; HET: PGE; 2.3A {Middle East respiratory syndrome coronavirus}
Probab=22.64  E-value=76  Score=33.23  Aligned_cols=27  Identities=52%  Similarity=0.736  Sum_probs=14.8  Template_Neff=2.500

Q sp|P0DTC2|SPIK 1178 NIQKEIDRLNEVAKNLNESLIDLQELG 1204 (1273)
Q Consensus      1178 niqkeidrlnevaknlneslidlqelg 1204 (1273)
                      .+--|.-.+..+.|.+||+.|||.|||
T Consensus       104 d~t~~~~s~~q~~~~~ne~~~~~~~~~  130 (131)
T 4NJL_A          104 DLTYEMLSLQQVVKALNESYIDLKELG  130 (131)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCGGGSC
T ss_pred             HHHHHHhhHHHHHHHHHHhcccHHHhc
Confidence            333333444555566666666666665


No 121
>4LWS_B Uncharacterized protein; ESX Secretion, Signal Sequence, Type; HET: ACT, GOL; 2.0A {Thermomonospora curvata}
Probab=22.18  E-value=79  Score=26.31  Aligned_cols=32  Identities=9%  Similarity=0.094  Sum_probs=19.5  Template_Neff=10.300

Q sp|P0DTC2|SPIK  955 NAQALNTLVKQLSSNFGAISSVLNDILSRLDK  986 (1273)
Q Consensus       955 naqalntlvkqlssnfgaissvlndilsrldk  986 (1273)
                      .++++..+.+++...+..+...|+++-..|..
T Consensus        54 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~   85 (103)
T 4LWS_B           54 AQAAYWNYQKEWDAAAKDMQNVVAQLGVAIRE   85 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666555544


No 122
>2NRJ_A Hbl B protein; Enterotoxin  Hemolysis  Transmembrane; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.90  E-value=80  Score=32.38  Aligned_cols=15  Identities=20%  Similarity=0.202  Sum_probs=6.3  Template_Neff=9.900

Q sp|P0DTC2|SPIK 1205 KYEQYIKWPWYIWLG 1219 (1273)
Q Consensus      1205 kyeqyikwpwyiwlg 1219 (1273)
                      +|+.++..-|++++|
T Consensus       194 ~~~~~~~~~~~~~~g  208 (346)
T 2NRJ_A          194 YYKQLESDGFNVMKG  208 (346)
T ss_dssp             GGGCCC--CCGGGTS
T ss_pred             HHHHHhhccchhchH
Confidence            455554444544444


No 123
>2N2A_B Receptor tyrosine-protein kinase erbB-2; HER2, ErbB2, Tyrosine kinase, Activation; NMR {Homo sapiens}
Probab=21.75  E-value=81  Score=26.93  Aligned_cols=23  Identities=22%  Similarity=0.033  Sum_probs=13.7  Template_Neff=7.000

Q sp|P0DTC2|SPIK 1206 YEQYIKWPWYIWLGFIAGLIAIV 1228 (1273)
Q Consensus      1206 yeqyikwpwyiwlgfiagliaiv 1228 (1273)
                      |||-.+-...|+.|.++|+++++
T Consensus         1 ~~~~~~~~~~I~~~Vvg~l~~~~   23 (58)
T 2N2A_B            1 AEQRASPLTSIISAVVGILLVVV   23 (58)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCChHHHHHHHHHHHHHHH
Confidence            34555545557777777776443


No 124
>6F5U_B Envelope glycoprotein,GP1, Envelope glycoprotein; EBOLA VIRUS, FILOVIRIDAE, ENVELOPE GLYCOPROTEIN; HET: NAG, GOL, CQN, DMS, BMA, MAN; 2.07A {Zaire ebolavirus (strain Mayinga-76)}
Probab=21.41  E-value=83  Score=33.10  Aligned_cols=38  Identities=16%  Similarity=0.183  Sum_probs=24.4  Template_Neff=5.300

Q sp|P0DTC2|SPIK  927 FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVK  964 (1273)
Q Consensus       927 fnsaigkiqdslsstasalgklqdvvnqnaqalntlvk  964 (1273)
                      ....+....++++.....+..+..+|-||..||.-|.-
T Consensus        57 l~~~~n~T~~al~~L~~~l~slr~vvLQNR~aLD~Ll~   94 (168)
T 6F5U_B           57 LRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQ   94 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence            33334444555555555556677889999999887653


No 125
>5F1B_B GP1, GP2, Niemann-Pick C1 protein; Ebola virus, glycoprotein, NPC1-C, VIRAL; HET: NAG; 2.3A {Zaire ebolavirus}
Probab=21.40  E-value=84  Score=31.95  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=24.1  Template_Neff=5.300

Q sp|P0DTC2|SPIK  929 SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQ  965 (1273)
Q Consensus       929 saigkiqdslsstasalgklqdvvnqnaqalntlvkq  965 (1273)
                      ..+....++++.....+..+..+|-||..||.-|.-+
T Consensus        52 ~~~n~t~~al~~L~~~l~sl~~vvLQNR~aLD~Ll~~   88 (130)
T 5F1B_B           52 QLANETTQALQLFLRATTELRTFSILNRKAIDFLLQR   88 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            3344445555555555666778889999998876543


No 126
>6HS4_B Envelope glycoprotein,Envelope glycoprotein,Envelope glycoprotein, Envelope; Ebola Glycoprotein, Structure-based In Silico; HET: BMA, GON, NAG, GOL, MAN; 2.05A {Zaire ebolavirus (strain Mayinga-76)}
Probab=21.34  E-value=84  Score=33.08  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=25.9  Template_Neff=5.300

Q sp|P0DTC2|SPIK  925 NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVK  964 (1273)
Q Consensus       925 nqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvk  964 (1273)
                      .+....+....++++.....+..+..+|-||..||.-|.-
T Consensus        55 ~~l~~~~n~t~~al~~L~~~l~sl~~vvLQNR~aLD~Ll~   94 (168)
T 6HS4_B           55 CGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQ   94 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence            3333444445555555566666677889999999987653


No 127
>2KG7_A Uncharacterized protein esxG (PE family; Protein complex, UNKNOWN FUNCTION; NMR {Mycobacterium tuberculosis}
Probab=21.11  E-value=85  Score=25.82  Aligned_cols=66  Identities=11%  Similarity=0.201  Sum_probs=38.0  Template_Neff=10.300

Q sp|P0DTC2|SPIK  923 IANQFNSAIGKIQDSLSSTASALGKLQDVVN-QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988 (1273)
Q Consensus       923 ianqfnsaigkiqdslsstasalgklqdvvn-qnaqalntlvkqlssnfgaissvlndilsrldkve  988 (1273)
                      .++++.+..+.|++.++.....+..|...-. ..+.+......++...+..+...|+++-..|.+..
T Consensus        14 ~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~   80 (97)
T 2KG7_A           14 SQSAFAAKAGLMRHTIGQAEQAAMSAQAFHQGESSAAFQAAHARFVAAAAKVNTLLDVAQANLGEAA   80 (97)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHGGGTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666555555554432222 23445666666666666666666666666665543


No 128
>6W08_B NSP15 endoribnuclease; Tripartite pore forming toxin, Cytotoxin; HET: EDO; 1.75A {Vibrio cholerae O1 biovar El Tor str. N16961}
Probab=20.88  E-value=87  Score=32.75  Aligned_cols=55  Identities=15%  Similarity=0.317  Sum_probs=27.7  Template_Neff=9.500

Q sp|P0DTC2|SPIK 1139 DPLQPELDSFKEELDKYFKNHTSPDVDLGD--------ISGINASVVNIQKEIDRLNEVAKNL 1193 (1273)
Q Consensus      1139 dplqpeldsfkeeldkyfknhtspdvdlgd--------isginasvvniqkeidrlnevaknl 1193 (1273)
                      +.++.+++.|+..|..+...-..-.-++..        ..+.++.+..++++|++|++-.+.+
T Consensus       122 ~~~~~~~~~~~~~l~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~~I~~l~~~i~~~  184 (359)
T 6W08_B          122 QSLTSNIKRYDEGLNAWARQVEDAHNTLQQTIAQIQQEEVSIQAEIIATNAQIDLMKQQIAAF  184 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666667777666554442222222322        1334445556666666665544433


No 129
>3OGI_C Putative ESAT-6-like protein 6, Putative; Structural Genomics, PSI-2, Protein Structure; HET: MSE; 2.549A {Mycobacterium tuberculosis}
Probab=20.43  E-value=90  Score=26.79  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=31.7  Template_Neff=9.500

Q sp|P0DTC2|SPIK  921 KLIANQFNSAIGKIQDSLSSTASALGKLQDV-VNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDK  986 (1273)
Q Consensus       921 klianqfnsaigkiqdslsstasalgklqdv-vnqnaqalntlvkqlssnfgaissvlndilsrldk  986 (1273)
                      .-.++.+....+.|++.++.....+..|.+. ....+++......++...+..+...|+++-..|+.
T Consensus        11 ~~~a~~l~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~l~~~~~~l~~   77 (101)
T 3OGI_C           11 DAHGAMIRAQAGLLEAEHQAIVRDVLAAGDFWGGAGSVACQEFITQLGRNFQVIYEQANAHGQKVQA   77 (101)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTCTTSHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666555555555332 22345555566666666666666666666555544


No 130
>5HJ3_L Envelope glycoprotein, KZ52 Antibody Fragment; Ebola virus, EOV, Ebolavirus, GP; HET: MAN, NAG, BMA; 3.3A {Ebola virus sp.}
Probab=20.10  E-value=93  Score=31.85  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=23.0  Template_Neff=5.300

Q sp|P0DTC2|SPIK  930 AIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVK  964 (1273)
Q Consensus       930 aigkiqdslsstasalgklqdvvnqnaqalntlvk  964 (1273)
                      .+....++++.....+..+..+|-||..||.-|.-
T Consensus        60 ~~n~t~~al~~L~~~l~sl~~vvLQNR~aLD~Lla   94 (136)
T 5HJ3_L           60 LANETTQALQLFLRATTELRTFSILNRKAIDFLLQ   94 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            33444455555555566677888999999887653


No 131
>6RX1_A Syncytin-1; HUMAN PLACENTAL PROTEIN, MEMBRANE FUSION; 2.1A {Homo sapiens}
Probab=20.03  E-value=93  Score=30.99  Aligned_cols=53  Identities=26%  Similarity=0.386  Sum_probs=30.7  Template_Neff=5.000

Q sp|P0DTC2|SPIK  908 GIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVK  964 (1273)
Q Consensus       908 gigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvk  964 (1273)
                      |.|+++.-+.    .+..+....+....++++.....+..+..+|-||..||.-|.-
T Consensus        12 ~~~~~~~~l~----~L~~~l~~~~n~t~~al~~L~~~l~sl~~vvLQNR~aLD~Ll~   64 (108)
T 6RX1_A           12 FQSTSTQFYY----KLSQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTA   64 (108)
T ss_dssp             ------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             ccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence            5555553222    2333444445556666777777777788899999999887653