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comparison test-data/test_output.log @ 2:563fd95fa88a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit 607e1d083ce036edde6f0ddb66871608c0ff7ca8
author iuc
date Sat, 03 May 2025 11:38:43 +0000
parents 553b27c30eb8
children
comparison
equal deleted inserted replaced
1:f75bf16ac901 2:563fd95fa88a
1 beagle.21Apr21.304.jar (version 5.2) 1 beagle.29Oct24.c8e.jar (version 5.4)
2 Copyright (C) 2014-2021 Brian L. Browning 2 Copyright (C) 2014-2022 Brian L. Browning
3 Enter "java -jar beagle.21Apr21.304.jar" to list command line argument 3 Enter "java -jar beagle.29Oct24.c8e.jar" to list command line argument
4 Start time: 08:46 PM GMT on 26 Jun 2021 4 Start time: 10:39 PM CEST on 02 May 2025
5 5
6 Command line: java -Xmx989m -jar beagle.21Apr21.304.jar 6 Command line: java -Xmx1024m -jar beagle.29Oct24.c8e.jar
7 gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat 7 gt=/home/elmedjadji/Documents/newgal/galaxy/database/objects/4/3/b/dataset_43be6aa5-2515-4fff-be35-4cbf54b2842f.dat
8 chrom=22:100- 8 chrom=22:100-
9 ne=1000000 9 ne=1000000
10 window=40.0 10 window=40.0
11 overlap=2.0 11 overlap=2.0
12 seed=1 12 seed=1
28 28
29 Reference samples: 0 29 Reference samples: 0
30 Study samples: 191 30 Study samples: 191
31 31
32 Window 1 [22:20000086-20016908] 32 Window 1 [22:20000086-20016908]
33 Reference markers: 223
34 Study markers: 223 33 Study markers: 223
35 34
36 Burnin iteration 1: 1 second 35 Burnin iteration 1: 0 seconds
37
38 Burnin iteration 2: 0 seconds 36 Burnin iteration 2: 0 seconds
39
40 Burnin iteration 3: 0 seconds 37 Burnin iteration 3: 0 seconds
41 38
39 Estimated ne: 333498
40 Estimated err: 2.0e-03
41
42 Phasing iteration 1: 0 seconds 42 Phasing iteration 1: 0 seconds
43
44 Phasing iteration 2: 0 seconds 43 Phasing iteration 2: 0 seconds
45
46 Phasing iteration 3: 0 seconds 44 Phasing iteration 3: 0 seconds
47
48 Phasing iteration 4: 0 seconds 45 Phasing iteration 4: 0 seconds
49
50 Phasing iteration 5: 0 seconds 46 Phasing iteration 5: 0 seconds
51
52 Phasing iteration 6: 0 seconds 47 Phasing iteration 6: 0 seconds
53
54 Phasing iteration 7: 0 seconds 48 Phasing iteration 7: 0 seconds
55
56 Phasing iteration 8: 0 seconds 49 Phasing iteration 8: 0 seconds
57
58 Phasing iteration 9: 0 seconds 50 Phasing iteration 9: 0 seconds
59
60 Phasing iteration 10: 0 seconds 51 Phasing iteration 10: 0 seconds
61
62 Phasing iteration 11: 0 seconds 52 Phasing iteration 11: 0 seconds
63
64 Phasing iteration 12: 0 seconds 53 Phasing iteration 12: 0 seconds
54 Low frequency phasing: 0 seconds
65 55
66 Cumulative Statistics: 56 Cumulative Statistics:
67 57
68 Study markers: 223 58 Study markers: 223
69 59
70 Haplotype phasing time: 2 seconds 60 Haplotype phasing time: 1 second
71 Total time: 3 seconds 61 Total time: 2 seconds
72 62
73 End time: 08:46 PM GMT on 26 Jun 2021 63 End time: 10:39 PM CEST on 02 May 2025
74 beagle.21Apr21.304.jar finished 64 beagle.29Oct24.c8e.jar finished