view test-data/test_output.log @ 2:563fd95fa88a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit 607e1d083ce036edde6f0ddb66871608c0ff7ca8

beagle.29Oct24.c8e.jar (version 5.4)
Copyright (C) 2014-2022 Brian L. Browning
Enter "java -jar beagle.29Oct24.c8e.jar" to list command line argument
Start time: 10:39 PM CEST on 02 May 2025

Command line: java -Xmx1024m -jar beagle.29Oct24.c8e.jar
  gt=/home/elmedjadji/Documents/newgal/galaxy/database/objects/4/3/b/dataset_43be6aa5-2515-4fff-be35-4cbf54b2842f.dat
  chrom=22:100-
  ne=1000000
  window=40.0
  overlap=2.0
  seed=1
  err=0.02
  burnin=3
  iterations=12
  phase-states=280
  impute=true
  imp-states=1600
  imp-segment=6.0
  imp-step=0.1
  cluster=0.005
  ap=false
  gp=false
  out=out
  nthreads=1

No genetic map is specified: using 1 cM = 1 Mb

Reference samples:                    0
Study     samples:                  191

Window 1 [22:20000086-20016908]
Study     markers:                  223

Burnin  iteration 1:           0 seconds
Burnin  iteration 2:           0 seconds
Burnin  iteration 3:           0 seconds

Estimated ne:                  333498
Estimated err:                 2.0e-03

Phasing iteration 1:           0 seconds
Phasing iteration 2:           0 seconds
Phasing iteration 3:           0 seconds
Phasing iteration 4:           0 seconds
Phasing iteration 5:           0 seconds
Phasing iteration 6:           0 seconds
Phasing iteration 7:           0 seconds
Phasing iteration 8:           0 seconds
Phasing iteration 9:           0 seconds
Phasing iteration 10:          0 seconds
Phasing iteration 11:          0 seconds
Phasing iteration 12:          0 seconds
Low frequency phasing:         0 seconds

Cumulative Statistics:

Study     markers:                  223

Haplotype phasing time:        1 second
Total time:                    2 seconds

End time: 10:39 PM CEST on 02 May 2025
beagle.29Oct24.c8e.jar finished