Mercurial > repos > iuc > busco

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
author iuc
date Tue, 29 Oct 2024 14:13:47 +0000
parents 2babe6d5c561
children
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e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
iuc
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1 # BUSCO version is: 5.8.0
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2024-01-08, number of genomes: 90, number of BUSCOs: 1013)
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e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
iuc
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpmwpuw5w8/files/f/d/6/dataset_fd6995c7-d1df-43b9-b8be-7e62043550f0.dat
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4 # BUSCO was run in mode: euk_genome_aug
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5 # Gene predictor used: augustus
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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7 ***** Results: *****
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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10 1 Complete BUSCOs (C)
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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11 1 Complete and single-copy BUSCOs (S)
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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12 0 Complete and duplicated BUSCOs (D)
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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13 0 Fragmented BUSCOs (F)
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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14 1012 Missing BUSCOs (M)
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15 1013 Total BUSCO groups searched
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17 Assembly Statistics:
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18 1 Number of scaffolds
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19 1 Number of contigs
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20 62370 Total length
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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21 0.000% Percent gaps
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22 62 KB Scaffold N50
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23 62 KB Contigs N50
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26 Dependencies and versions:
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e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
iuc
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27 hmmsearch: 3.4
e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
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28 bbtools: None
e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
iuc
parents: 21
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29 makeblastdb: 2.16.0+
e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
iuc
parents: 21
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30 tblastn: 2.16.0+
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2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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31 augustus: 3.5.0
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
iuc
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32 gff2gbSmallDNA.pl: None
2babe6d5c561 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
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33 new_species.pl: None
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34 etraining: None
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e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
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35 python: sys.version_info(major=3, minor=10, micro=14, releaselevel='final', serial=0)
e5c372c91e46 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 8565e8283f976870104e08aa7729a1624edd6f58
iuc
parents: 21
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36 busco: 5.8.0