Mercurial > repos > iuc > busco

annotate test-data/genome_results/short_summary @ 20:ea8146ee148f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
author iuc
date Mon, 18 Mar 2024 16:01:49 +0000
parents 2a5b8b9936bf
children 2babe6d5c561
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ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
parents: 19
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1 # BUSCO version is: 5\.5\.0
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
parents: 19
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2 # The lineage dataset is: arthropoda_odb10 \(Creation date: [0-9]{4}-[0-9]{2}-[0-9]{2}, number of genomes: 90, number of BUSCOs: 1013\)
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
parents: 19
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3 # Summarized benchmarking in BUSCO notation for file [a-z0-9_\-/\.]+
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4 # BUSCO was run in mode: euk_genome_aug
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5 # Gene predictor used: augustus
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ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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7 \*\*\*\*\* Results: \*\*\*\*\*
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ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
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9 C:0\.1%\[S:0\.1%,D:0\.0%\],F:0\.0%,M:99\.9%,n:1013
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
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10 1 Complete BUSCOs \(C\)
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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11 1 Complete and single-copy BUSCOs \(S\)
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
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12 0 Complete and duplicated BUSCOs \(D\)
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
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13 0 Fragmented BUSCOs \(F\)
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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14 1012 Missing BUSCOs \(M\)
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15 1013 Total BUSCO groups searched
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17 Assembly Statistics:
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18 1 Number of scaffolds
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19 1 Number of contigs
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20 62370 Total length
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ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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21 0\.000% Percent gaps
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22 62 KB Scaffold N50
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23 62 KB Contigs N50
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26 Dependencies and versions:
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ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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27 hmmsearch: [0-9\.\+]+
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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28 bbtools: [0-9\.\+]+
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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29 makeblastdb: [0-9\.\+]+
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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30 tblastn: [0-9\.\+]+
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
iuc
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31 augustus: [0-9\.\+]+
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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32 gff2gbSmallDNA\.pl: None
ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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33 new_species\.pl: None
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34 etraining: None
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ea8146ee148f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
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35 busco: [0-9\.\+]+