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comparison test-data/genome_results/short_summary @ 20:ea8146ee148f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
author iuc
date Mon, 18 Mar 2024 16:01:49 +0000
parents 2a5b8b9936bf
children 2babe6d5c561
comparison
equal deleted inserted replaced
19:2a5b8b9936bf 20:ea8146ee148f
1 # BUSCO version is: 5.5.0 1 # BUSCO version is: 5\.5\.0
2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) 2 # The lineage dataset is: arthropoda_odb10 \(Creation date: [0-9]{4}-[0-9]{2}-[0-9]{2}, number of genomes: 90, number of BUSCOs: 1013\)
3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpbmq1q2c6/files/8/e/b/dataset_8eb218b1-f367-4315-9915-554c009808cb.dat 3 # Summarized benchmarking in BUSCO notation for file [a-z0-9_\-/\.]+
4 # BUSCO was run in mode: euk_genome_aug 4 # BUSCO was run in mode: euk_genome_aug
5 # Gene predictor used: augustus 5 # Gene predictor used: augustus
6 6
7 ***** Results: ***** 7 \*\*\*\*\* Results: \*\*\*\*\*
8 8
9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013 9 C:0\.1%\[S:0\.1%,D:0\.0%\],F:0\.0%,M:99\.9%,n:1013
10 1 Complete BUSCOs (C) 10 1 Complete BUSCOs \(C\)
11 1 Complete and single-copy BUSCOs (S) 11 1 Complete and single-copy BUSCOs \(S\)
12 0 Complete and duplicated BUSCOs (D) 12 0 Complete and duplicated BUSCOs \(D\)
13 0 Fragmented BUSCOs (F) 13 0 Fragmented BUSCOs \(F\)
14 1012 Missing BUSCOs (M) 14 1012 Missing BUSCOs \(M\)
15 1013 Total BUSCO groups searched 15 1013 Total BUSCO groups searched
16 16
17 Assembly Statistics: 17 Assembly Statistics:
18 1 Number of scaffolds 18 1 Number of scaffolds
19 1 Number of contigs 19 1 Number of contigs
20 62370 Total length 20 62370 Total length
21 0.000% Percent gaps 21 0\.000% Percent gaps
22 62 KB Scaffold N50 22 62 KB Scaffold N50
23 62 KB Contigs N50 23 62 KB Contigs N50
24 24
25 25
26 Dependencies and versions: 26 Dependencies and versions:
27 hmmsearch: 3.1 27 hmmsearch: [0-9\.\+]+
28 bbtools: 39.01 28 bbtools: [0-9\.\+]+
29 makeblastdb: 2.14.0+ 29 makeblastdb: [0-9\.\+]+
30 tblastn: 2.14.0+ 30 tblastn: [0-9\.\+]+
31 augustus: 3.5.0 31 augustus: [0-9\.\+]+
32 gff2gbSmallDNA.pl: None 32 gff2gbSmallDNA\.pl: None
33 new_species.pl: None 33 new_species\.pl: None
34 etraining: None 34 etraining: None
35 busco: 5.5.0 35 busco: [0-9\.\+]+