Mercurial > repos > iuc > isoformswitchanalyzer
changeset 0:f3fefb6d8254 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer commit 2c61e4c6151000201dd9a8323722a380bc235380
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IsoformSwitchAnalyzeR.R Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,924 @@ +# Load the IsoformSwitchAnalyzeR library +library(IsoformSwitchAnalyzeR, + quietly = TRUE, + warn.conflicts = FALSE) +library(argparse, quietly = TRUE, warn.conflicts = FALSE) +library(dplyr, quietly = TRUE, warn.conflicts = FALSE) + +# setup R error handling to go to stderr +options( + show.error.messages = FALSE, + error = function() { + cat(geterrmessage(), file = stderr()) + q("no", 1, FALSE) + } +) + +# we need that to not crash galaxy with an UTF8 error on German LC settings. +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") + +################################################################################ +### Input Processing +################################################################################ + + +# Collect arguments from command line +parser <- ArgumentParser(description = "IsoformSwitcheR R script") + +parser$add_argument("--modeSelector") +parser$add_argument("--parentDir", required = FALSE, help = "Parent directory") +parser$add_argument("--readLength", + required = FALSE, + type = "integer", + help = "Read length (required for stringtie)") +parser$add_argument("--annotation", required = FALSE, help = "Annotation") +parser$add_argument("--transcriptome", required = FALSE, help = "Transcriptome") +parser$add_argument( + "--fixStringTieAnnotationProblem", + action = "store_true", + required = FALSE, + help = "Fix StringTie annotation problem" +) +parser$add_argument("--countFiles", required = FALSE, help = "Count files") +parser$add_argument("--toolSource", required = FALSE, help = "Tool source") +parser$add_argument("--rObject", required = FALSE, help = "R object") +parser$add_argument("--IFcutoff", + required = FALSE, + type = "numeric", + help = "IFcutoff") +parser$add_argument( + "--geneExpressionCutoff", + required = FALSE, + type = "numeric", + help = "Gene expression cutoff" +) +parser$add_argument( + "--isoformExpressionCutoff", + required = FALSE, + type = "numeric", + help = "Isoform expression cutoff" +) +parser$add_argument("--alpha", + required = FALSE, + type = "numeric", + help = "") +parser$add_argument("--dIFcutoff", + required = FALSE, + type = "numeric", + help = "dIF cutoff") +parser$add_argument( + "--onlySigIsoforms", + required = FALSE, + action = "store_true", + help = "Only significative isoforms" +) +parser$add_argument( + "--filterForConsequences", + required = FALSE, + action = "store_true", + help = "Filter for consequences" +) +parser$add_argument( + "--removeSingleIsformGenes", + required = FALSE, + action = "store_true", + help = "Remove single isoform genes" +) +parser$add_argument( + "--keepIsoformInAllConditions", + required = FALSE, + action = "store_true", + help = "Keep isoform in all conditions" +) +parser$add_argument( + "--correctForConfoundingFactors", + required = FALSE, + action = "store_true", + help = "Correct for confunding factors" +) +parser$add_argument( + "--overwriteIFvalues", + required = FALSE, + action = "store_true", + help = "Overwrite IF values" +) +parser$add_argument( + "--reduceToSwitchingGenes", + required = FALSE, + action = "store_true", + help = "Reduce to switching genes" +) +parser$add_argument( + "--reduceFurtherToGenesWithConsequencePotential", + required = FALSE, + action = "store_true", + help = "Reduce further to genes with consequence potential" +) +parser$add_argument( + "--keepIsoformInAllConditions2", + required = FALSE, + action = "store_true", + help = "Keep isoform in ll conditions" +) +parser$add_argument("--minORFlength", + required = FALSE, + type = "integer", + help = "") +parser$add_argument("--orfMethod", required = FALSE, help = "ORF methods") +parser$add_argument("--PTCDistance", + required = FALSE, + type = "integer", + help = "") +parser$add_argument( + "--removeShortAAseq", + required = FALSE, + action = "store_true", + help = "Remove short aminoacid sequences" +) +parser$add_argument( + "--removeLongAAseq", + required = FALSE, + action = "store_true", + help = "Remove long aminoacid sequences" +) +parser$add_argument( + "--removeORFwithStop", + required = FALSE, + action = "store_true", + help = "Remove ORF with stop codon" +) +parser$add_argument( + "--onlySwitchingGenes", + required = FALSE, + action = "store_true", + help = "Only switching genes" +) +parser$add_argument("--analysisMode", required = FALSE, help = "Analyze all isoforms with differential usage or single genes") +parser$add_argument( + "--genesToPlot", + type = "integer", + default = 10, + required = FALSE, + help = "Number of genes to plot" +) +parser$add_argument("--gene", required = FALSE, help = "Gene ID to analyze") +parser$add_argument( + "--sortByQvals", + action = "store_true", + required = FALSE, + help = "Sort genes by Q-val values" +) +parser$add_argument("--countGenes", + action = "store_true", + required = FALSE, + help = "Count genes") +parser$add_argument( + "--asFractionTotal", + action = "store_true", + required = FALSE, + help = "Plot gene expresson as fraction of total" +) +parser$add_argument("--plotGenes", + action = "store_true", + required = FALSE, + help = "Plot genes instead of isoforms") +parser$add_argument( + "--simplifyLocation", + action = "store_true", + required = FALSE, + help = "Simplify localtion" +) +parser$add_argument( + "--removeEmptyConsequences", + action = "store_true", + required = FALSE, + help = "Remove empty consequences" +) +parser$add_argument( + "--analysisOppositeConsequence", + action = "store_true", + required = FALSE, + help = "Analysi opposite consequences" +) +parser$add_argument("--pathToCPATresultFile", + required = FALSE, + help = "Path to CPAT result file") +parser$add_argument("--pathToCPC2resultFile", + required = FALSE, + help = "Path to CPC2 result file") +parser$add_argument("--pathToPFAMresultFile", + required = FALSE, + help = "Path to PFAM result file") +parser$add_argument("--pathToNetSurfP2resultFile", + required = FALSE, + help = "Path to NetSurfP2 result file") +parser$add_argument("--pathToSignalPresultFile", + required = FALSE, + help = "Path to signalP result file") +parser$add_argument("--pathToIUPred2AresultFile", + required = FALSE, + help = "Path to IUPred2A result file") +parser$add_argument("--codingCutoff", + required = FALSE, + type = "numeric", + help = "Codding cutoff") +parser$add_argument( + "--removeNoncodingORFs", + action = "store_true", + required = FALSE, + help = "Remove non-coding ORFs" +) +parser$add_argument( + "--minSignalPeptideProbability", + required = FALSE, + type = "numeric", + help = "Minimul signal peptide probability" +) +parser$add_argument( + "--smoothingWindowSize", + type = "integer", + required = FALSE, + help = "Smoothing windows size" +) +parser$add_argument( + "--probabilityCutoff", + required = FALSE, + type = "double", + help = "Probability cutoff" +) +parser$add_argument("--minIdrSize", + required = FALSE, + type = "integer", + help = "Min Idr size") +parser$add_argument( + "--annotateBindingSites", + action = "store_true", + required = FALSE, + help = "Annotate binding sites" +) +parser$add_argument( + "--minIdrBindingSize", + required = FALSE, + type = "integer", + help = "Minimun Idr binding size" +) +parser$add_argument( + "--minIdrBindingOverlapFrac", + required = FALSE, + type = "numeric", + help = "" +) +parser$add_argument("--ntCutoff", + required = FALSE, + type = "integer", + help = "Nucleotide cutoff") +parser$add_argument("--ntFracCutoff", + required = FALSE, + type = "numeric", + help = "Nucleotide fraction cutoff") +parser$add_argument( + "--ntJCsimCutoff", + required = FALSE, + type = "numeric", + help = "Nucleotide Jaccard simmilarity cutoff" +) +parser$add_argument("--AaCutoff", + required = FALSE, + type = "integer", + help = "Aminoacid cutoff") +parser$add_argument("--AaFracCutoff", + required = FALSE, + type = "numeric", + help = "Aminoacid fraction cutoff") +parser$add_argument( + "--AaJCsimCutoff", + required = FALSE, + type = "numeric", + help = "Aminoacid Jaccard similarity cutoff" +) +parser$add_argument( + "--removeNonConseqSwitches", + action = "store_true", + required = FALSE, + help = "Remove switches without consequences" +) +parser$add_argument( + "--rescaleTranscripts", + action = "store_true", + required = FALSE, + help = "Rescale transcripts" +) +parser$add_argument( + "--reverseMinus", + action = "store_true", + required = FALSE, + help = "Reverse minus" +) +parser$add_argument( + "--addErrorbars", + action = "store_true", + required = FALSE, + help = "Add error bars" +) + + +args <- parser$parse_args() + +# Data import +################### + +if (args$modeSelector == "data_import") { + + quantificationData <- importIsoformExpression( + parentDir = args$parentDir, + addIsofomIdAsColumn = TRUE, + readLength = args$readLength + ) + + ### Make design matrix + myDesign <- data.frame( + sampleID = colnames(quantificationData$abundance)[-1], + condition = gsub( + "[[:digit:]]+", + "", + colnames(quantificationData$abundance)[-1] + ) + ) + + if (args$toolSource == "stringtie") { + SwitchList <- importRdata( + isoformCountMatrix = quantificationData$counts, + isoformRepExpression = quantificationData$abundance, + designMatrix = myDesign, + isoformExonAnnoation = args$annotation, + isoformNtFasta = args$transcriptome, + showProgress = TRUE, + fixStringTieAnnotationProblem = args$fixStringTieAnnotationProblem + ) + } else { + SwitchList <- importRdata( + isoformCountMatrix = quantificationData$counts, + isoformRepExpression = quantificationData$abundance, + designMatrix = myDesign, + isoformExonAnnoation = args$annotation, + isoformNtFasta = args$transcriptome, + showProgress = TRUE + ) + } + + + geneCountMatrix <- extractGeneExpression( + SwitchList, + extractCounts = TRUE, + addGeneNames = FALSE, + addIdsAsColumns = FALSE + ) + + if (args$countFiles == "collection") { + + expressionDF <- data.frame(geneCountMatrix) + + myDesign$condition[length(myDesign$condition)] + + dataframe_factor1 <- expressionDF %>% select(matches(myDesign$condition[1])) + dataframe_factor2 <- expressionDF %>% select(matches(myDesign$condition[length(myDesign$condition)])) + + + lf1 <- as.list(as.data.frame(dataframe_factor1)) + sampleNames1 <- colnames(as.data.frame(dataframe_factor1)) + + lf2 <- as.list(as.data.frame(dataframe_factor2)) + sampleNames2 <- colnames(as.data.frame(dataframe_factor2)) + + geneNames <- row.names(as.data.frame(expressionDF)) + + + for (index in seq_along(lf1)) { + tabular_expression <- data.frame(geneNames, lf1[index]) + colnames(tabular_expression) <- + c("Geneid", sampleNames1[index]) + filename <- + paste(sampleNames1[index], "dataset.tabular", sep = "_") + output_path <- paste("./count_files/factor1/", filename, sep = "") + write.table( + tabular_expression, + output_path, + sep = "\t", + row.names = FALSE, + quote = FALSE + ) + } + for (index in seq_along(lf2)) { + tabular_expression <- data.frame(geneNames, lf2[index]) + colnames(tabular_expression) <- + c("Geneid", sampleNames2[index]) + filename <- + paste(sampleNames2[index], "dataset.tabular", sep = "_") + output_path <- paste("./count_files/factor2/", filename, sep = "") + write.table( + tabular_expression, + output_path, + sep = "\t", + row.names = FALSE, + quote = FALSE + ) + } + } else if (args$countFiles == "matrix") { + expressionDF <- data.frame(geneCountMatrix) + geneNames <- row.names(expressionDF) + + expressionDF <- cbind(geneNames, expressionDF) + write.table( + as.data.frame(expressionDF), + "./count_files/matrix.tabular", + sep = "\t", + row.names = FALSE, + quote = FALSE + ) + write.table( + as.data.frame(myDesign), + "./count_files/samples.tabular", + sep = "\t", + row.names = FALSE, + quote = FALSE + ) + } + + save(SwitchList, file = "SwitchList.Rda") + +} + +if (args$modeSelector == "first_step") { + + # First part of the analysis + ############################# + + load(file = args$rObject) + + ### Filter + SwitchList <- preFilter( + SwitchList, + IFcutoff = args$IFcutoff, + geneExpressionCutoff = args$geneExpressionCutoff, + isoformExpressionCutoff = args$isoformExpressionCutoff, + removeSingleIsoformGenes = args$removeSingleIsformGenes, + onlySigIsoforms = args$onlySigIsoforms, + keepIsoformInAllConditions = args$keepIsoformInAllConditions, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + ) + + ### Test for isoform switches + SwitchList <- isoformSwitchTestDEXSeq( + SwitchList, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + correctForConfoundingFactors = args$correctForConfoundingFactors, + overwriteIFvalues = args$overwriteIFvalues, + reduceToSwitchingGenes = args$reduceToSwitchingGenes, + reduceFurtherToGenesWithConsequencePotential = args$reduceFurtherToGenesWithConsequencePotential, + onlySigIsoforms = args$onlySigIsoforms, + keepIsoformInAllConditions = args$keepIsoformInAllConditions2, + showProgress = TRUE, + ) + + SwitchList <- analyzeNovelIsoformORF( + SwitchList, + analysisAllIsoformsWithoutORF = TRUE, + minORFlength = args$minORFlength, + orfMethod = args$orfMethod, + PTCDistance = args$PTCDistance, + startCodons = "ATG", + stopCodons = c("TAA", "TAG", "TGA"), + showProgress = TRUE, + ) + + ### Extract Sequences + SwitchList <- extractSequence( + SwitchList, + onlySwitchingGenes = args$onlySwitchingGenes, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + extractNTseq = TRUE, + extractAAseq = TRUE, + removeShortAAseq = args$removeShortAAseq, + removeLongAAseq = args$removeLongAAseq, + removeORFwithStop = args$removeORFwithStop, + addToSwitchAnalyzeRlist = TRUE, + writeToFile = TRUE, + pathToOutput = getwd(), + outputPrefix = "isoformSwitchAnalyzeR_isoform", + forceReExtraction = FALSE, + quiet = FALSE + ) + + ### Summary + switchSummary <- extractSwitchSummary( + SwitchList, + filterForConsequences = args$filterForConsequences, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + onlySigIsoforms = args$onlySigIsoforms, + ) + + save(SwitchList, file = "SwitchList.Rda") + write.table( + switchSummary, + file = "switchSummary.tsv", + quote = FALSE, + sep = "\t", + col.names = TRUE, + row.names = FALSE + ) + +} + +if (args$modeSelector == "second_step") { + + # Second part of the analysis + ############################# + + load(file = args$rObject) + + ### Add annotation + if (!is.null(args$pathToCPATresultFile)) { + SwitchList <- analyzeCPAT( + SwitchList, + pathToCPATresultFile = args$pathToCPATresultFile, + codingCutoff = args$codingCutoff, + removeNoncodinORFs = args$removeNoncodingORFs + ) + } + + if (!is.null(args$pathToCPC2resultFile)) { + SwitchList <- analyzeCPC2( + SwitchList, + pathToCPC2resultFile = args$pathToCPC2resultFile, + removeNoncodinORFs = args$removeNoncodingORFs + ) + } + + if (!is.null(args$pathToPFAMresultFile)) { + pfamFiles <- list.files(path = args$pathToPFAMresultFile, + full.names = TRUE) + + SwitchList <- analyzePFAM(SwitchList, + pathToPFAMresultFile = pfamFiles, + showProgress = FALSE) + } + + if (!is.null(args$pathToNetSurfP2resultFile)) { + netsurfFiles <- list.files(path = args$pathToNetSurfP2resultFile, + full.names = TRUE) + + SwitchList <- analyzeNetSurfP2( + SwitchList, + pathToNetSurfP2resultFile = netsurfFiles, + smoothingWindowSize = args$smoothingWindowSize, + probabilityCutoff = args$probabilityCutoff, + minIdrSize = args$minIdrSize, + showProgress = TRUE + ) + } + + if (!is.null(args$pathToIUPred2AresultFile)) { + SwitchList <- analyzeIUPred2A( + SwitchList, + pathToIUPred2AresultFile = args$pathToIUPred2AresultFile, + smoothingWindowSize = args$smoothingWindowSize, + probabilityCutoff = args$probabilityCutoff, + minIdrSize = args$minIdrSize, + annotateBindingSites = args$annotateBindingSites, + minIdrBindingSize = args$minIdrBindingSize, + minIdrBindingOverlapFrac = args$minIdrBindingOverlapFrac, + showProgress = TRUE, + quiet = FALSE + ) + } + + if (!is.null(args$pathToSignalPresultFile)) { + signalpFiles <- list.files(path = args$pathToSignalPresultFile, + full.names = TRUE) + + SwitchList <- analyzeSignalP( + SwitchList, + pathToSignalPresultFile = signalpFiles, + minSignalPeptideProbability = args$minSignalPeptideProbability + ) + } + + SwitchList <- analyzeAlternativeSplicing( + SwitchList, + onlySwitchingGenes = args$onlySwitchingGenes, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + showProgress = TRUE + ) + + SwitchList <- analyzeIntronRetention( + SwitchList, + onlySwitchingGenes = args$onlySwitchingGenes, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + showProgress = TRUE + ) + + consequences <- c( + "intron_retention", + "NMD_status", + "isoform_seq_similarity", + "ORF_genomic", + "tss", + "tts" + ) + + if (!is.null(args$pathToCPATresultFile) || + !is.null(args$pathToCPC2resultFile)) { + updatedConsequences <- c(consequences, "coding_potential") + consequences <- updatedConsequences + } + + if (!is.null(args$pathToPFAMresultFile)) { + updatedConsequences <- c(consequences, "domains_identified") + consequences <- updatedConsequences + } + + if (!is.null(args$pathToSignalPresultFile)) { + updatedConsequences <- c(consequences, "signal_peptide_identified") + consequences <- updatedConsequences + } + + if (!is.null(args$pathToNetSurfP2resultFile) || + !is.null(args$pathToIUPred2AresultFile)) { + updatedConsequences <- c(consequences, "IDR_identified", "IDR_type") + consequences <- updatedConsequences + } + + SwitchList <- analyzeSwitchConsequences( + SwitchList, + consequencesToAnalyze = consequences, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + onlySigIsoforms = args$onlySigIsoforms, + ntCutoff = args$ntCutoff, + ntJCsimCutoff = args$ntJCsimCutoff, + AaCutoff = args$AaCutoff, + AaFracCutoff = args$AaFracCutoff, + AaJCsimCutoff = args$AaJCsimCutoff, + removeNonConseqSwitches = args$removeNonConseqSwitches, + showProgress = TRUE + ) + + + ### Visual analysis + # Top genes + + if (args$analysisMode == "single") { + + outputFile <- file.path(getwd(), "single_gene.pdf") + + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + + switchPlot( + SwitchList, + gene = args$gene, + condition1 = myDesign$condition[1], + condition2 = myDesign$condition[length(myDesign$condition)], + IFcutoff = args$IFcutoff, + dIFcutoff = args$dIFcutoff, + rescaleTranscripts = args$rescaleTranscripts, + reverseMinus = args$reverseMinus, + addErrorbars = args$addErrorbars, + logYaxis = FALSE, + localTheme = theme_bw(base_size = 8) + ) + dev.off() + + } else { + mostSwitchingGene <- + extractTopSwitches( + SwitchList, + n = Inf, + filterForConsequences = args$filterForConsequences, + extractGenes = TRUE, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + inEachComparison = FALSE, + sortByQvals = args$sortByQvals + ) + + write.table( + mostSwitchingGene, + file = "mostSwitchingGene.tsv", + quote = FALSE, + sep = "\t", + col.names = TRUE, + row.names = FALSE + ) + + + switchPlotTopSwitches( + SwitchList, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + onlySigIsoforms = args$onlySigIsoforms, + n = args$genesToPlot, + sortByQvals = args$sortByQvals, + pathToOutput = getwd(), + fileType = "pdf" + ) + + outputFile <- + file.path(getwd(), "extractConsequencesSummary.pdf") + + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + + consequenceSummary <- extractConsequenceSummary( + SwitchList, + consequencesToAnalyze = "all", + includeCombined = FALSE, + asFractionTotal = args$asFractionTotal, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + plot = TRUE, + plotGenes = args$plotGenes, + simplifyLocation = args$simplifyLocation, + removeEmptyConsequences = args$removeEmptyConsequences, + returnResult = TRUE, + localTheme = theme_bw() + ) + dev.off() + + write.table( + consequenceSummary, + file = "consequencesSummary.tsv", + quote = FALSE, + sep = "\t", + col.names = TRUE, + row.names = FALSE + ) + + + outputFile <- file.path(getwd(), "consequencesEnrichment.pdf") + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + consequenceEnrichment <- extractConsequenceEnrichment( + SwitchList, + consequencesToAnalyze = "all", + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + countGenes = args$countGenes, + analysisOppositeConsequence = args$analysisOppositeConsequence, + plot = TRUE, + localTheme = theme_bw(base_size = 12), + minEventsForPlotting = 10, + returnResult = TRUE + ) + dev.off() + + write.table( + consequenceEnrichment, + file = "consequencesEnrichment.tsv", + quote = FALSE, + sep = "\t", + col.names = TRUE, + row.names = FALSE + ) + + + outputFile <- file.path(getwd(), "splicingEnrichment.pdf") + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + splicingEnrichment <- extractSplicingEnrichment( + SwitchList, + splicingToAnalyze = "all", + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + onlySigIsoforms = args$onlySigIsoforms, + countGenes = args$countGenes, + plot = TRUE, + minEventsForPlotting = 10, + returnResult = TRUE + ) + dev.off() + + write.table( + splicingEnrichment, + file = "splicingEnrichment.tsv", + quote = FALSE, + sep = "\t", + col.names = TRUE, + row.names = FALSE + ) + + + outputFile <- file.path(getwd(), "splicingSummary.pdf") + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + splicingSummary <- extractSplicingSummary( + SwitchList, + splicingToAnalyze = "all", + asFractionTotal = args$asFractionTotal, + alpha = args$alpha, + dIFcutoff = args$dIFcutoff, + onlySigIsoforms = args$onlySigIsoforms, + plot = TRUE, + plotGenes = args$plotGenes, + localTheme = theme_bw(), + returnResult = TRUE + ) + dev.off() + + write.table( + splicingSummary, + file = "splicingSummary.tsv", + quote = FALSE, + sep = "\t", + col.names = TRUE, + row.names = FALSE + ) + + + ### Volcano like plot: + outputFile <- file.path(getwd(), "volcanoPlot.pdf") + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + ggplot(data = SwitchList$isoformFeatures, aes(x = dIF, y = -log10(isoform_switch_q_value))) + + geom_point(aes(color = abs(dIF) > 0.1 & + isoform_switch_q_value < 0.05), # default cutoff + size = 1) + + geom_hline(yintercept = -log10(0.05), linetype = "dashed") + # default cutoff + geom_vline(xintercept = c(-0.1, 0.1), linetype = "dashed") + # default cutoff + facet_wrap(~ condition_2) + + scale_color_manual("Signficant\nIsoform Switch", values = c("black", "red")) + + labs(x = "dIF", y = "-Log10 ( Isoform Switch Q Value )") + + theme_bw() + dev.off() + + + ### Switch vs Gene changes: + outputFile <- file.path(getwd(), "switchGene.pdf") + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + ggplot(data = SwitchList$isoformFeatures, + aes(x = gene_log2_fold_change, y = dIF)) + + geom_point(aes(color = abs(dIF) > 0.1 & + isoform_switch_q_value < 0.05), + size = 1) + + facet_wrap(~ condition_2) + + geom_hline(yintercept = 0, linetype = "dashed") + + geom_vline(xintercept = 0, linetype = "dashed") + + scale_color_manual("Signficant\nIsoform Switch", values = c("black", "red")) + + labs(x = "Gene log2 fold change", y = "dIF") + + theme_bw() + dev.off() + + outputFile <- file.path(getwd(), "splicingGenomewide.pdf") + pdf( + file = outputFile, + onefile = FALSE, + height = 6, + width = 9 + ) + splicingGenomeWide <- extractSplicingGenomeWide( + SwitchList, + featureToExtract = "all", + splicingToAnalyze = c("A3", "MES", "ATSS"), + plot = TRUE, + returnResult = TRUE + ) + dev.off() + } + save(SwitchList, file = "SwitchList.Rda") + +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/isoformswitchanalyzer.xml Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,1030 @@ +<tool id="isoformswitchanalyzer" name="IsoformSwitchAnalyzeR" version="@TOOL_VERSION@+galaxy@SUFFIX_VERSION@"> + <description>statistical identification of isoform switching</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro='xrefs'/> + <expand macro='requirements'/> + <stdio> + <regex match="Execution halted" + source="both" + level="fatal" + description="Execution halted." /> + <regex match="Error in" + source="both" + level="fatal" + description="An undefined error occurred, please check your input carefully and contact your administrator." /> + <regex match="Fatal error" + source="both" + level="fatal" + description="An undefined error occurred, please check your input carefully and contact your administrator." /> + </stdio> + <command><![CDATA[ + #if $functionMode.selector == 'data_import' + #if $functionMode.transcriptome.is_of_type("fasta.gz"): + ln -s '${functionMode.transcriptome}' './transcriptome.fasta.gz' && + #set $transcriptome = './transcriptome.fasta.gz' + #else + ln -s '${functionMode.transcriptome}' './transcriptome.fasta' + #set $transcriptome = './transcriptome.fasta' + #end if + #if $functionMode.genomeAnnotation.is_of_type("gtf.gz"): + ln -s '${functionMode.genomeAnnotation}' './annotation.gtf.gz' && + #set $annotation = './annotation.gtf.gz' + #else + ln -s '${functionMode.genomeAnnotation}' './annotation.gtf' && + #set $annotation = './annotation.gtf' + #end if + mkdir -p 'input_files' && + #if $functionMode.countFiles != 'disabled': + mkdir -p "count_files/factor1/" && + mkdir -p "count_files/factor2/" && + #end if + #if $functionMode.tool_source.selector == 'stringtie' + #set $filename = 't_data.ctab' + #else + #set $filename = 'quant.sf' + #end if + + #for $index in range(len($functionMode.first_factor.trans_counts)): + mkdir './input_files/${functionMode.first_factor.factorLevel}${index}/' && + ln -s $functionMode.first_factor.trans_counts[$index] './input_files/${functionMode.first_factor.factorLevel}${index}/${filename}' && + #end for + + #for $index in range(len($functionMode.second_factor.trans_counts)): + mkdir './input_files/${functionMode.second_factor.factorLevel}${index}/' && + ln -s $functionMode.second_factor.trans_counts[$index] './input_files/${functionMode.second_factor.factorLevel}${index}/${filename}' && + #end for + + Rscript '${__tool_directory__}/IsoformSwitchAnalyzeR.R' + --modeSelector $functionMode.selector + --parentDir './input_files' + --annotation $annotation + --transcriptome $transcriptome + --toolSource $functionMode.tool_source.selector + #if $functionMode.tool_source.selector == 'stringtie' + --readLength $functionMode.tool_source.averageSize + $functionMode.tool_source.fixStringTieAnnotationProblem + #end if + --countFiles $functionMode.countFiles + #else if $functionMode.selector == 'first_step' + Rscript '${__tool_directory__}/IsoformSwitchAnalyzeR.R' + --modeSelector $functionMode.selector + --rObject $functionMode.robject + --alpha $functionMode.alpha + --dIFcutoff $functionMode.dIFcutoff + $functionMode.onlySigIsoforms + $functionMode.filterForConsequences + --geneExpressionCutoff $functionMode.prefilter.geneExpressionCutoff + --isoformExpressionCutoff $functionMode.prefilter.isoformExpressionCutoff + --IFcutoff $functionMode.prefilter.IFcutoff + $functionMode.prefilter.removeSingleIsformGenes + $functionMode.prefilter.keepIsoformInAllConditions + $functionMode.dexseq.correctForConfoundingFactors + $functionMode.dexseq.overwriteIFvalues + $functionMode.dexseq.reduceToSwitchingGenes + $functionMode.dexseq.reduceFurtherToGenesWithConsequencePotential + $functionMode.dexseq.keepIsoformInAllConditions + --minORFlength $functionMode.novel_isoform.minORFlength + --orfMethod $functionMode.novel_isoform.orfMethod + --PTCDistance $functionMode.novel_isoform.PTCDistance + $functionMode.extract_sequence.removeShortAAseq + $functionMode.extract_sequence.removeLongAAseq + $functionMode.extract_sequence.removeORFwithStop + $functionMode.extract_sequence.onlySwitchingGenes + #else + #if $functionMode.protein_domains.selector == 'enabled' + mkdir -p './pfam_files' && + #for $index,$filename in enumerate($functionMode.protein_domains.analyzePFAM) + ln -s $filename './pfam_files/dataset${index}.txt' && + #end for + #end if + #if $functionMode.signal_peptides.selector == 'enabled' + mkdir -p './signalp_files' && + #for $index,$filename in enumerate($functionMode.signal_peptides.analyzeSignalP) + ln -s $filename './signalp_files/dataset${index}.txt' && + #end for + #end if + #if $functionMode.disordered_regions.selector == 'netsurfp' + mkdir -p './netsurf_files' && + #for $index,$filename in enumerate($functionMode.disordered_regions.analyzeNetSurfP2) + ln -s $filename './netsurf_files/dataset${index}.txt' && + #end for + #end if + Rscript '${__tool_directory__}/IsoformSwitchAnalyzeR.R' + --modeSelector $functionMode.selector + --rObject $functionMode.robject + --analysisMode $functionMode.analysis_mode.selector + --alpha $functionMode.analysis_mode.alpha + --dIFcutoff $functionMode.analysis_mode.dIFcutoff + #if $functionMode.analysis_mode.selector == 'top' + --genesToPlot $functionMode.analysis_mode.n + $functionMode.analysis_mode.advanced_options.filterForConsequences + $functionMode.analysis_mode.advanced_options.sortByQvals + $functionMode.analysis_mode.advanced_options.onlySigIsoforms + $functionMode.analysis_mode.advanced_options.onlySwitchingGenes + $functionMode.analysis_mode.advanced_options.countGenes + $functionMode.analysis_mode.advanced_options.asFractionTotal + $functionMode.analysis_mode.advanced_options.plotGenes + $functionMode.analysis_mode.advanced_options.simplifyLocation + $functionMode.analysis_mode.advanced_options.removeEmptyConsequences + $functionMode.analysis_mode.advanced_options.removeEmptyConsequences + #else + --gene $functionMode.analysis_mode.gene + --IFcutoff $functionMode.analysis_mode.advanced_options.IFcutoff + $functionMode.analysis_mode.advanced_options.rescaleTranscripts + $functionMode.analysis_mode.advanced_options.reverseMinus + $functionMode.analysis_mode.advanced_options.addErrorbars + $functionMode.analysis_mode.advanced_options.onlySwitchingGenes + #end if + #if $functionMode.coding_potential.selector == 'cpat' + --pathToCPATresultFile $functionMode.coding_potential.analyzeCPAT + --codingCutoff $functionMode.coding_potential.codingCutoff + #else if $functionMode.coding_potential.selector == 'cpc2' + --pathToCPC2resultFile $functionMode.coding_potential.analyzeCPC2 + $functionMode.coding_potential.removeNoncodingORFs + --codingCutoff $functionMode.coding_potential.codingCutoff + #end if + #if $functionMode.protein_domains.selector == 'enabled' + --pathToPFAMresultFile './pfam_files' + #end if + #if $functionMode.signal_peptides.selector == 'enabled' + --pathToSignalPresultFile './signalp_files' + --minSignalPeptideProbability $functionMode.signal_peptides.minSignalPeptideProbability + #end if + #if $functionMode.disordered_regions.selector == 'netsurfp' + --pathToNetSurfP2resultFile './netsurf_files' + --smoothingWindowSize $functionMode.disordered_regions.smoothingWindowSize + --probabilityCutoff $functionMode.disordered_regions.probabilityCutoff + --minIdrSize $functionMode.disordered_regions.minIdrSize + #else if $functionMode.disordered_regions.selector == 'iupred2a' + --pathToIUPred2AresultFile $functionMode.disordered_regions.AanalyzeIUPred2A + --smoothingWindowSize $functionMode.disordered_regions.smoothingWindowSize + --probabilityCutoff $functionMode.disordered_regions.probabilityCutoff + --minIdrSize $functionMode.disordered_regions.minIdrSize + $functionMode.disordered_regions.annotateBindingSites + --minIdrBindingSize $functionMode.disordered_regions.minIdrBindingSize + --minIdrBindingOverlapFrac $functionMode.disordered_regions.minIdrBindingOverlapFrac + #end if + --ntCutoff $functionMode.analyzeSwitchConsequences.ntCutoff + #if $functionMode.analyzeSwitchConsequences.ntFracCutoff + --ntFracCutoff $functionMode.analyzeSwitchConsequences.ntFracCutoff + #end if + --ntJCsimCutoff $functionMode.analyzeSwitchConsequences.ntJCsimCutoff + --AaCutoff $functionMode.analyzeSwitchConsequences.AaCutoff + --AaFracCutoff $functionMode.analyzeSwitchConsequences.AaFracCutoff + --AaJCsimCutoff $functionMode.analyzeSwitchConsequences.AaJCsimCutoff + $functionMode.analyzeSwitchConsequences.removeNonConseqSwitches + #if $functionMode.analysis_mode.selector == 'top' + && mkdir -p './pdf_outputs/' + && mv *pdf './pdf_outputs/' + && mv *_vs_* gene_plots + #end if + #end if + ]]></command> + <inputs> + <conditional name="functionMode"> + <param name="selector" type="select" label="Tool function mode" + help="The first step of a IsoformSwitchAnalyzeR workflow is to import and integrate the isoform quantification + with its basic annotation. Once you have all the relevant data imported into R (IsoformSwitchAnalyzeR will + also help you with that), the workflow for identification and analysis of isoform switches with functional + consequences can be divided into two parts."> + <option value="data_import">Import data</option> + <option value="first_step">Analysis part one: Extract isoform switches and their sequences</option> + <option value="second_step">Analysis part two: Plot all isoform switches and their annotation</option> + </param> + <when value="data_import"> + <section name="first_factor" title="1: Factor level" expanded="true"> + <param name="factorLevel" type="text" value="FactorLevel" label="Specify a factor level, typical values could be 'tumor' or 'treated'" + help="Only letters, numbers and underscores will be retained in this field"> + <sanitizer> + <valid initial="string.letters,string.digits"><add value="_" /></valid> + </sanitizer> + </param> + <param name="trans_counts" type="data" format="tabular" multiple="true" label="Transcript-level expression measurements"/> + </section> + <section name="second_factor" title="2: Factor level" expanded="true"> + <param name="factorLevel" type="text" value="FactorLevel" label="Specify a factor level, typical values could be 'tumor' or 'treated'" + help="Only letters, numbers and underscores will be retained in this field"> + <sanitizer> + <valid initial="string.letters,string.digits"><add value="_" /></valid> + </sanitizer> + </param> + <param name="trans_counts" type="data" format="tabular" multiple="true" label="Transcript-level expression measurements"/> + </section> + <conditional name="tool_source"> + <param name="selector" type="select" label="Quantification data source" help="IsoformSwitchAnalyzeR has different functions for importing data from different sources."> + <option value="stringtie">StringTie</option> + <option value="salmon">Salmon/Kallisto</option> + </param> + <when value="salmon"/> + <when value="stringtie"> + <param name="averageSize" type="integer" min="0" value="150" label="Average read length" help="Must be the number of base pairs sequenced. e.g. if the data + quantified is 75 bp paired ends the the user should supply readLength=75" /> + <param argument="fixStringTieAnnotationProblem" type="boolean" truevalue="--fixStringTieAnnotationProblem" falsevalue="" checked="true" + label="Fix StringTie annotation problem" help="This option will automatically try and correct some of the annoation problems created when + doing transcript assembly (unassigned transcripts and merged genes)" /> + </when> + </conditional> + <param name="genomeAnnotation" type="data" format="gtf,gtf.gz" label="Genome annotation (GTF)" + help="It is used to integrate the coding sequence (CDS) regions from in the GTF file as the ORF regions used by IsoformSwitchAnalyzeR." /> + <param name="transcriptome" type="data" format="fasta,fasta.gz" label="Transcriptome" + help="Please note this different from a fasta file with the sequences of the entire genome." /> + <param name="countFiles" type="select" label="Generate count matrix files" help="If IsoformSwitchAnalyzeR is used for fixing Stringtie annotation + problem, it can generate count files for analyzing differential expression with DESeq2 (when selecting collection) or CEMiTool (when secting the expression matrix format)."> + <option value="disabled">Disabled</option> + <option value="collection">Collection of count files</option> + <option value="matrix">Expression matrix</option> + </param> + </when> + + <!--WRAPPER FIRST STEP SECTION--> + + <when value="first_step"> + <param name="robject" type="data" format="rdata" label="IsoformSwitchAnalyzeR R object" help="It is generated when running the analysis part 1." /> + <expand macro="macro_alpha_difcutoff"/> + <expand macro="macro_onlysigisoforms1"/> + <param argument="filterForConsequences" type="boolean" truevalue="--filterForConsequences" falsevalue="" checked="false" + label="Filter for consquences" help="Filter for genes with functional consequences. The output will then be the number of significant genes + and isoforms originating from genes with predicted consequences" /> + <section name="prefilter" title="Pre-filter parameters" help="SwitchAnalyzeR will remove genes/isoforms with the aim of allowing faster + processing time as well as more trustworthy results."> + <param argument="geneExpressionCutoff" type="float" min="0" value="1" label="Gene expression cutoff" help="The expression cutoff (most + likely in TPM/RPKM/FPKM) which the average expression in BOTH condisions must be higher than." /> + <param argument="isoformExpressionCutoff" type="float" min="0" value="0" label="Isoform expresion cutoff" help="The expression cutoff (most + likely in RPKM/FPKM) which isoforms must be expressed more than, in at least one conditions of a comparison. Default is 0 (which removes + completely unused isoforms)." /> + <expand macro="macro_ifcutoff" value="0.01" help="The cutoff on isoform usage (measured as Isoform Fraction) which isoforms must be used more + than in at least one conditions of a comparison" /> + <param argument="removeSingleIsformGenes" type="boolean" truevalue="--removeSingleIsformGenes" falsevalue="" checked="true" label="Remove single isoform genes" + help="Only keep genes containing more than one isoform (in any comparison, after the other filters have been applied)" /> + <expand macro="macro_keeisoforminall" checked="false"/> + </section> + <section name="dexseq" title="DEXseq parameters" help="DEXSeq is used to test isoforms (isoform resolution) for differential isoform usage."> + <param argument="correctForConfoundingFactors" type="boolean" truevalue="--correctForConfoundingFactors" falsevalue="" checked="true" label="Correct for confounding factors" + help="A logic indicating whether IsoformSwitchAnalyzeR to use limma to correct for any confounding effects (e.g. batch effects) as indicated in the + design matrix (as additional columns (apart from the two default columns)) " /> + <param argument="overwriteIFvalues" type="boolean" truevalue="--overwriteIFvalues" falsevalue="" checked="true" label="Overwrite IF values" help="It indicates + whether to overwrite the IF and dIF stored in the switchAnalyzeRlist with the corrected IF and dIF values - if no confounding effects are + present in the design matrix this will not change anything" /> + <param argument="reduceToSwitchingGenes" type="boolean" truevalue="--reduceToSwitchingGenes" falsevalue="" checked="true" label="Reduce to switch genes" help="Reduced to the + genes which contains at least one isoform significantly differential used (as indicated by the alpha and dIFcutoff parameters" /> + <param argument="reduceFurtherToGenesWithConsequencePotential" type="boolean" truevalue="--reduceFurtherToGenesWithConsequencePotential" falsevalue="" checked="false" + label="Reduce to genes with consequence potential" help="This argument is a more strict version of reduceToSwitchingGenes + as it not only requires that at least one isoform is significantly differential used (as indicated by the alpha and dIFcutoff parameters) but also that there is an isoform + with the opposite effect size (e.g. used less if the first isoform is used more). The minimum effect size of the opposing isoform usage is also controlled by dIFcutoff. + The existence of such an opposing isoform means a switch pair can be formed" /> + <expand macro="macro_keeisoforminall" checked="true"/> + </section> + <section name="novel_isoform" title="Novel isoform analysis parameters" help="For the subset of isoforms not already annotated with ORFs this + function predicts the most likely Open Reading Frame (ORF) and the NMD sensitivity. This function is made to help annotate + isoforms if you have performed (guided) de-novo isoform reconstruction (isoform deconvolution)."> + <param argument="minORFlength" type="integer" min="0" value="100" label="Minimum ORF length" help="The minimum size (in nucleotides) an + ORF must be to be considered (and reported). Default is 100 nucleotides, which around 97.5% of Gencode coding isoforms in both human and mouse have." /> + <param argument="orfMethod" type="select" label="ORF identification method" help="More information in the help section"> + <option value="longest.AnnotatedWhenPossible">Longest and annotated when possible</option> + <option value="longest">Longest</option> + <option value="mostUpstream">Most upstream</option> + <option value="longestAnnotated">Longest annotated</option> + <option value="mostUpstreamAnnoated">Most upstream annotated</option> + </param> + <param argument="PTCDistance" type="integer" min="0" value="50" label="Maximal allowed premature termination codon-distance" help="The minimum + distance (number of nucleotides) from the STOP codon to the final exon-exon junction. If the distance from the STOP to the final exon-exon + junction is larger than this the isoform to be marked as NMD-sensitive. " /> + </section> + <section name="extract_sequence" title="Sequence extraction parameters" help="switchAnalyzeR will extracts the nucleotide (NT) sequence of transcripts by + extracting and concatenating the sequences of a reference genome corresponding to the genomic coordinates of the isoforms. "> + <expand macro="macro_onlyswitching"/> + <param argument="removeShortAAseq" type="boolean" truevalue="--removeShortAAseq" falsevalue="" checked="true" label="Remove short aminoacid sequences" help="This + option exist to allows for easier usage of the Pfam and SignalP web servers which both currently have restrictions on allowed sequence lengths. If + enabled AA sequences are filtered to be > 5 AA. This will only affect the sequences written to the FASTA file not the sequences added to the switchAnalyzeRlist" /> + <param argument="removeLongAAseq" type="boolean" truevalue="--removeLongAAseq" falsevalue="" checked="false" label="Remove long aminoacid sequences" help="A + logical indicating whether to removesequences based on their length. This option exist to allows for easier usage of the Pfam and SignalP web servers + which both currently have restrictions on allowed sequence lengths. If enabled AA sequences are filtered to be smaller 1000 AA. This will only affect the + sequences written to the fasta file (if writeToFile=TRUE) not the sequences added to the switchAnalyzeRlist. " /> + <param argument="removeORFwithStop" type="boolean" truevalue="--removeORFwithStop" falsevalue="" checked="true" label="Remove ORFs containint STOP codons" help="ORFs + containing stop codons, defined as * when the ORF nucleotide sequences is translated to the amino acid sequence, should be A) removed from the ORF + annotation in the switchAnalyzeRlist and B) removed from the sequences added to the switchAnalyzeRlist and/or written to FASTA files. This is only + necessary if you are analyzing quantified known annotated data where you supplied a GTF file to the import function" /> + </section> + <param name="outputs_first" type="select" display="checkboxes" multiple="true" label="Outputs selector"> + <option value="nt" selected="true">Nucleotide sequences</option> + <option value="aa" selected="true">Aminoacid sequences</option> + <option value="summary" selected="true">Gene switch summary</option> + </param> + </when> + + <!-- WRAPPER SECOND STEP SECTION--> + + <when value="second_step"> + <param name="robject" type="data" format="rdata" label="IsoformSwitchAnalyzeR R object" help="It is generated when running the analysis part 2." /> + <conditional name="analysis_mode"> + <param name="selector" type="select" label="Analysis mode" help="This selector allows so specify if you want to analyze a specific gene or + the (top) switching genes/isoforms "> + <option value="top" selected="true">Full analysis</option> + <option value="single">Analyze specific gene</option> + </param> + <when value="top"> + <expand macro="macro_alpha_difcutoff"/> + <param argument="n" type="integer" min="1" value="10" label="Number of top switching features (genes/isoforms) to plot" + help="This parameters allows to specify the number of top genes/isoforms to plot"/> + <section name="advanced_options" title="Full analysis advanced options"> + <param argument="filterForConsequences" type="boolean" truevalue="--filterForConsequences" falsevalue="" checked="false" label="Filter genes with functional consequences" + help="The output will then be the number of significant genes and isoforms originating from genes with predicted consequences"/> + <param argument="sortByQvals" type="boolean" truevalue="--sortByQvals" falsevalue="" checked="true" label="Sorting mode" help="A logic indicating + whether to the top n features are sorted by decreasing significance (increasing q-values) (if enabled) or decreasing switch size + (absolute dIF, which are still significant as defined by alpha) (if disabled). The dIF values for genes are considered as the total + change within the gene calculated as sum(abs(dIF)) for each gene" /> + <expand macro="macro_onlysigisoforms2"/> + <expand macro="macro_onlyswitching"/> + <param argument="countGenes" type="boolean" truevalue="--countGenes" falsevalue="" checked="true" label="Number genes or isoform switches counts" help="This parameter indicates + whether it is the number of genes (if enabled) or isoform switches (if disabled) which primary result in gain/loss that are counted" /> + <param argument="asFractionTotal" type="boolean" truevalue="--asFractionTotal" falsevalue="" checked="false" label="Summary as numbers of as fraction" help="The consequences/splicing events + should be summarized calculated as numbers (if disabled) or as a fraction of the total number of switches/genes" /> + <param argument="plotGenes" type="boolean" truevalue="--plotGenes" falsevalue="" checked="false" label="Plot number/fraction of genes or isoforms" help="Plot the number/fraction of genes with + (if enabled) or isoforms (if disabled) involved with isoform switches with functional consequences (both filtered via alpha and dIFcutoff)" /> + <param argument="simplifyLocation" type="boolean" truevalue="--simplifyLocation" falsevalue="" checked="true" label="Simplify location" help="Simplify the switches involved in changes + in subcellular localizations (due the the hundreds of possible combinations)" /> + <param argument="removeEmptyConsequences" type="boolean" truevalue="--removeEmptyConsequences" falsevalue="" checked="false" label="Remove empty consequences" help="Remove consequenses analyzed + but where no differences was found (those showing zero in the plot)" /> + <param argument="analysisOppositeConsequence" type="boolean" truevalue="--analysisOppositeConsequence" falsevalue="" checked="false" + label="Analysis opposite consequences in enrichment analysis" help="Reverse the analysis meaning if 'Domain gains' are analyze will case the analysis to be performed on 'Domain loss'. + The main effect is for the visual appearance of plot which will be mirrored (around the 0.5 fraction)" /> + </section> + </when> + <when value="single"> + <param argument="gene" type="text" value="" label="Gene name" help="Either the gene_id or the gene name of the gene to plot"> + <sanitizer invalid_char=""> + <valid initial="string.letters,string.digits"> + <add value="_" /> + <add value="-" /> + </valid> + </sanitizer> + <validator type="regex">[0-9a-zA-Z_-]+</validator> + </param> + <expand macro="macro_alpha_difcutoff"/> + <section name="advanced_options" title="Single gene mode advanced options"> + <expand macro="macro_ifcutoff" value="0.05" help="The cutoff used for the minimum contribution to gene expression (in at least one + condition) for an isoforms must have to be plotted (measured as Isoform Fraction (IF) values)" /> + <param argument="rescaleTranscripts" type="boolean" truevalue="--rescaleTranscripts" falsevalue="" checked="true" label="Rescale transcripts" + help="All the isoforms should be resealed to the square root of their original sizes. This feature is implemented because + introns usually are much larger than exons making it difficult to see structural changes. This is very useful for structural + visualization but the scaling might distort actual intron and exon sizes" /> + <param argument="reverseMinus" type="boolean" truevalue="--reverseMinus" falsevalue="" checked="true" label="Isoforms on minus strand + should be inverted" help="Isoforms on minus strand should be inverted so they are visualized as going from left to right + instead of right to left" /> + <param argument="addErrorbars" type="boolean" truevalue="--addErrorbars" falsevalue="" checked="true" label="Add error bars" help="Error + bars should be added to the expression plots to show uncertainty in estimates" /> + <expand macro="macro_onlyswitching"/> + </section> + </when> + </conditional> + <conditional name="coding_potential"> + <param name="selector" type="select" label="Include prediction of coding potential information" + help="Integrate in the analysis de output from CPAT or CPC2."> + <option value="disabled">Disabled</option> + <option value="cpat">CPAT</option> + <option value="cpc2">CPC2</option> + </param> + <when value="disabled"/> + <when value="cpat"> + <param argument="analyzeCPAT" type="data" format="txt" label="CPAT result file" + help=" Use default parameters and the nucleotide fasta file (_nt.fasta). If the webserver was used, download the tab-delimited + result file (available at the bottom of the result page). If a stand-alone version was used, just supply the path to the result file" /> + <param argument="codingCutoff" type="float" min="0" max="1" value="0.725" label="Coding cutoff" help="cutoff used by CPAT for distinguishing between + coding and non-coding transcripts. The cutoff is dependent on species analyzed. IsoformSwitchAnalyzerR developers suggest that the optimal cutoff + for overlapping coding and noncoding isoforms are 0.725 for human and 0.721 for mouse. However the suggested cutoffs from the CPAT develpers + derived by comparing known genes to random non-coding regions of the genome is 0.364 for human and 0.44 for mouse" /> + </when> + <when value="cpc2"> + <param argument="analyzeCPC2" type="data" format="txt" label="CPC2 result file" + help="Use default parameters and if required select the most similar species. If the webserver (batch submission) was used, + download the tab-delimited result file (via the “Download the result” button). If a stand-alone version was just just supply the path to the result file" /> + <param argument="removeNoncodingORFs" type="boolean" truevalue="--removeNoncodingORFs" falsevalue="" checked="false" label="Remove non-coding ORFs" help="Remove ORF information + from the isoforms which the CPC2 analysis classifies as non-coding. This can be particular useful if the isoform (and ORF) was predicted de-novo but is not + recommended if ORFs was imported from a GTF file" /> + <param argument="codingCutoff" type="float" min="0" max="1" value="0.5" label="Coding cutoff" help="Numeric indicating the cutoff used by CPC2 for distinguishing + between coding and non-coding transcripts. The cutoff appears to be species independent." /> + </when> + </conditional> + <conditional name="protein_domains"> + <param name="selector" type="select" label="Include Pfam information" help="Pfam is a database of protein families that includes their annotations and multiple sequence + alignments generated using hidden Markov models."> + <option value="disabled">Disabled</option> + <option value="enabled">Enabled</option> + </param> + <when value="disabled"/> + <when value="enabled"> + <param argument="analyzePFAM" type="data" format="txt" multiple="true" optional="true" label="Include Pfam results (sequence analysis of protein domains)" help="Use default + parameters and the amino acid fasta file (_AA.fasta). If the webserver is used you need to copy/paste the result part of the mail you receive into an empty plain text + document (notepad, sublimetext, TextEdit or similar (not Word)) and save that to a plain text (txt) file. The path to that file should be supplied. If a stand-alone + version was used, just supply the path to the result file" /> + </when> + </conditional> + <conditional name="signal_peptides"> + <param name="selector" type="select" label="Include SignalP results" help="Integration of the result of SignalP (external sequence analysis of signal peptides)"> + <option value="disabled">Disabled</option> + <option value="enabled">Enabled</option> + </param> + <when value="disabled"/> + <when value="enabled"> + <param argument="analyzeSignalP" type="data" format="txt" multiple="true" optional="true" label="SignalP" help="Use the amino acid fasta file (_AA.fasta). If using the webserver SignalP + should be run with the parameter 'Short output (no figures)' under 'Output format' and one should select the appropriate 'Organism group'. When + using a stand-alone version SignalP should be run with the '-f summary' option. If using the webserver the results can be downloaded using the + 'Downloads' button in the top-right corner where the user should select 'Prediction summary' and supply the path to the resulting file to the + 'pathToSignalPresultFile' argument. If a stand-alone version was just supply the path to the summary result file." /> + <param argument="minSignalPeptideProbability" type="float" min="0" max="1" value="0.5" label="Minimum probability for calling a signal peptide"/> + </when> + </conditional> + + <conditional name="disordered_regions"> + <param name="selector" type="select" label="Include prediction of intrinsically disordered Regions (IDR) information" + help="Integrate in the analysis de output from IUPred2A or NetSurfP-2"> + <option value="disabled">Disabled</option> + <option value="iupred2a">IUPred2A</option> + <option value="netsurfp">NetSurfP-2</option> + </param> + <when value="disabled"/> + <when value="iupred2a"> + <param argument="AanalyzeIUPred2A" type="data" format="txt,gz" label="IUPred2A result file" help="Can be gziped. If + multiple result files were created (multiple web-server runs) just supply all of them." /> + <expand macro="macro_disordered_regions"/> + <param argument="annotateBindingSites" type="boolean" truevalue="--annotateBindingSites" falsevalue="" checked="true" label="Annotate binding sites" + help="Integrate the ANCHOR2 prediction of Intrinsically Disordered Binding Regions (IDBRs)" /> + <param argument="minIdrBindingSize" type="integer" min="0" value="15" label="Minimum IDBR binding size" help="How long a stretch of + binding site the region part of the Intrinsically Disordered Binding Regions (IDBR)" /> + <param argument="minIdrBindingOverlapFrac" type="float" min="0" value="0.8" label="Minimum fraction of a predicted IDBR" help="Minimum + fraction of a predicted IDBR must also be within a IDR before the IDR is considered as a an IDR with a binding region" /> + </when> + <when value="netsurfp"> + <param argument="analyzeNetSurfP2" type="data" format="txt,gz" multiple="true" label="NetSurfP-2 result file" help="Can be gziped. If + multiple result files were created (multiple web-server runs) just supply all of them." /> + <expand macro="macro_disordered_regions"/> + </when> + </conditional> + <section name="analyzeSwitchConsequences" title="Analyze switch consequences parameters"> + <param argument="ntCutoff" type="integer" min="0" value="50" label="Nucleotide length cutoff" help="The length difference (in nucleotides) a + comparison must be larger than for reporting differences" /> + <param argument="ntFracCutoff" type="float" min="0" max="1" optional="true" label="Nucleotide length fraction cutoff" help="The cutoff in length + difference, measured as a fraction of the length of the downregulated isoform, a comparison must be larger than for + reporting differences. For example does 0.05 mean the upregulated isoform must be 5% longer/shorter before it is reported. " /> + <param argument="ntJCsimCutoff" type="float" min="0" max="1" value="0.8" label="Cutoff on Jaccard similarity between the overlap of two nucloetide sequences" help=" If the + measured JCsim is smaller than this cutoff the sequences are considered different and reported as such" /> + <param argument="AaCutoff" type="integer" min="0" value="10" label="Aminoacid lenght cutoff" help="Length difference (in AA) a comparison must be larger + than for reporting differences when evaluating ’ORF_seq_similarity’, primarily implemented to avoid differences in very short AA sequences being + classified as different" /> + <param argument="AaFracCutoff" type="float" min="0" max="1" value="0.5" label="Aminoacid length fraction cutoff" help="Cutoff of length difference of + the protein domain or IDR. The difference is measured as a fraction of the longest region, a comparison must be larger than before reporting it" /> + <param argument="AaJCsimCutoff" type="float" min="0" max="1" value="0.9" label="Cutoff between the overlap of two aminoacid sequences" help="If the + measured JCsim is smaller than this cutoff the sequences are considered different and reported as such" /> + <param argument="removeNonConseqSwitches" type="boolean" truevalue="--removeNonConseqSwitches" falsevalue="" checked="true" label="Remove the comparison of isoforms + where no consequences were found" /> + </section> + </when> + </conditional> + </inputs> + <outputs> + <collection name="collection_counts_factor1" type="list" label="${tool.name} on ${on_string}: gene counts factor1"> + <discover_datasets pattern="__designation_and_ext__" format="tabular" directory="count_files/factor1" /> + <filter>functionMode['selector'] == 'data_import'</filter> + <filter>functionMode['countFiles'] == 'collection'</filter> + </collection> + <collection name="collection_counts_factor2" type="list" label="${tool.name} on ${on_string}: gene counts factor2"> + <discover_datasets pattern="__designation_and_ext__" format="tabular" directory="count_files/factor2" /> + <filter>functionMode['selector'] == 'data_import'</filter> + <filter>functionMode['countFiles'] == 'collection'</filter> + </collection> + <data name="matrix_counts" format="tabular" from_work_dir="count_files/matrix.tabular" label="${tool.name} on ${on_string}: gene counts matrix"> + <filter>functionMode['selector'] == 'data_import'</filter> + <filter>functionMode['countFiles'] == 'matrix'</filter> + </data> + <data name="sample_annotation" format="tabular" from_work_dir="count_files/samples.tabular" label="${tool.name} on ${on_string}: samples annotation"> + <filter>functionMode['selector'] == 'data_import'</filter> + <filter>functionMode['countFiles'] == 'matrix'</filter> + </data> + <data name="switchList" format="rdata" from_work_dir="SwitchList.Rda" label="${tool.name} on ${on_string}: SwitchList (RData)"/> + <data name="isoformAA" format="fasta" from_work_dir="isoformSwitchAnalyzeR_isoform_AA.fasta" label="${tool.name} on ${on_string}: aminoacid sequences"> + <filter>functionMode['selector'] == 'first_step'</filter> + <filter>functionMode['outputs_first'] and 'aa' in functionMode['outputs_first']</filter> + </data> + <data name="isoformNT" format="fasta" from_work_dir="isoformSwitchAnalyzeR_isoform_nt.fasta" label="${tool.name} on ${on_string}: nucleotide sequences"> + <filter>functionMode['selector'] == 'first_step'</filter> + <filter>functionMode['outputs_first'] and 'nt' in functionMode['outputs_first']</filter> + </data> + <data name="switchSummary" format="tabular" from_work_dir="switchSummary.tsv" label="${tool.name} on ${on_string}: summary"> + <filter>functionMode['selector'] == 'first_step'</filter> + <filter>functionMode['outputs_first'] and 'summary' in functionMode['outputs_first']</filter> + </data> + <collection name="plots_summary" type="list" label="${tool.name} on ${on_string}: genome wide plots"> + <discover_datasets pattern="__designation_and_ext__" format="pdf" directory="pdf_outputs" /> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </collection> + <collection name="genes_consequences" type="list" label="${tool.name} on ${on_string}: isoform switches with predicted functional consequences plots"> + <discover_datasets pattern="__designation_and_ext__" format="pdf" directory="gene_plots/with_consequences" /> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </collection> + <collection name="genes_wo_consequences" type="list" label="${tool.name} on ${on_string}: isoform switches without predicted functional consequences plots"> + <discover_datasets pattern="__designation_and_ext__" format="pdf" directory="gene_plots/without_consequences" /> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </collection> + <data name="mostSwitching" format="tabular" from_work_dir="mostSwitchingGene.tsv" label="${tool.name} on ${on_string}: switching gene/isoforms"> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </data> + <data name="consequencesSummary" format="tabular" from_work_dir="consequencesSummary.tsv" label="${tool.name} on ${on_string}: consequences summary"> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </data> + <data name="consequencesEnrichment" format="tabular" from_work_dir="consequencesEnrichment.tsv" label="${tool.name} on ${on_string}: consequences enrichment"> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </data> + <data name="splicingSummary" format="tabular" from_work_dir="splicingSummary.tsv" label="${tool.name} on ${on_string}: splicing summary"> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </data> + <data name="splicingEnrichment" format="tabular" from_work_dir="splicingEnrichment.tsv" label="${tool.name} on ${on_string}: splicing enrichment"> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'top'</filter> + </data> + <data name="single_gene" format="pdf" from_work_dir="single_gene.pdf" label="${tool.name} on ${on_string}: single gene analysis"> + <filter>functionMode['selector'] == 'second_step'</filter> + <filter>functionMode['analysis_mode']['selector'] == 'single'</filter> + </data> + </outputs> + <tests> + <!-- Test 01: Data import mode--> + <test expect_num_outputs="1"> + <conditional name="functionMode"> + <param name="selector" value="data_import"/> + <param name="genomeAnnotation" value="annotation_salmon.gtf.gz"/> + <param name="transcriptome" value="transcriptome.fasta.gz"/> + <param name="countFiles" value="disabled"/> + <section name="first_factor"> + <param name="factorLevel" value="health"/> + <param name="trans_counts" value="salmon_cond1_rep1.sf,salmon_cond1_rep2.sf"/> + </section> + <section name="second_factor"> + <param name="factorLevel" value="cancer"/> + <param name="trans_counts" value="salmon_cond2_rep1.sf,salmon_cond2_rep2.sf"/> + </section> + <conditional name="tool_source"> + <param name="selector" value="salmon"/> + </conditional> + </conditional> + <output name="switchList" file="test01.RData" ftype="rdata" compare="sim_size" delta="100"/> + </test> + <!-- Test 02: Data import mode generate expression matrix--> + <test expect_num_outputs="3"> + <conditional name="functionMode"> + <param name="selector" value="data_import"/> + <param name="genomeAnnotation" value="annotation_salmon.gtf.gz"/> + <param name="transcriptome" value="transcriptome.fasta.gz"/> + <param name="countFiles" value="matrix"/> + <section name="first_factor"> + <param name="factorLevel" value="health"/> + <param name="trans_counts" value="salmon_cond1_rep1.sf,salmon_cond1_rep2.sf"/> + </section> + <section name="second_factor"> + <param name="factorLevel" value="cancer"/> + <param name="trans_counts" value="salmon_cond2_rep1.sf,salmon_cond2_rep2.sf"/> + </section> + <conditional name="tool_source"> + <param name="selector" value="salmon"/> + </conditional> + </conditional> + <output name="switchList" ftype="rdata"> + <assert_contents> + <has_size value="652170" delta="300"/> + </assert_contents> + </output> + <output name="matrix_counts" file="test02_counts.tabular" ftype="tabular" lines_diff="6"/> + <output name="sample_annotation" file="test02_samples_annotation.tabular" ftype="tabular"/> + </test> + <!-- Test 03: Data import mode generate collection count files--> + <test expect_num_outputs="3"> + <conditional name="functionMode"> + <param name="selector" value="data_import"/> + <param name="genomeAnnotation" value="annotation_salmon.gtf.gz"/> + <param name="transcriptome" value="transcriptome.fasta.gz"/> + <param name="countFiles" value="collection"/> + <section name="first_factor"> + <param name="factorLevel" value="health"/> + <param name="trans_counts" value="salmon_cond1_rep1.sf,salmon_cond1_rep2.sf"/> + </section> + <section name="second_factor"> + <param name="factorLevel" value="cancer"/> + <param name="trans_counts" value="salmon_cond2_rep1.sf,salmon_cond2_rep2.sf"/> + </section> + <conditional name="tool_source"> + <param name="selector" value="salmon"/> + </conditional> + </conditional> + <output name="switchList" ftype="rdata"> + <assert_contents> + <has_size value="652170" delta="300"/> + </assert_contents> + </output> + <output_collection name="collection_counts_factor1" type="list" count="2"> + <element name="cancer0_dataset" file="test03_cancer_counts.tabular" ftype="tabular" lines_diff="6"/> + </output_collection> + <output_collection name="collection_counts_factor2" type="list" count="2"> + <element name="health0_dataset" file="test03_health_counts.tabular" ftype="tabular" lines_diff="6"/> + </output_collection> + </test> + <!-- Test 04: Extract isoform switches all outputs--> + <test expect_num_outputs="4"> + <conditional name="functionMode"> + <param name="selector" value="first_step"/> + <param name="robject" value="test01.RData"/> + <param name="alpha" value="0.05"/> + <param name="dIFcutoff" value="0.1"/> + <param name="onlySigIsoforms" value="false"/> + <param name="filterForConsequences" value="false"/> + <param name="outputs_first" value="nt,aa,summary"/> + <section name="prefilter"> + <param name="geneExpressionCutoff" value="1"/> + <param name="isoformExpressionCutoff" value="0"/> + <param name="IFcutoff" value="0.01"/> + <param name="removeSingleIsformGenes" value="true"/> + <param name="keepIsoformInAllConditions" value="false"/> + </section> + <section name="dexseq"> + <param name="correctForConfoundingFactors" value="true"/> + <param name="overwriteIFvalues" value="true"/> + <param name="reduceToSwitchingGenes" value="true"/> + <param name="reduceFurtherToGenesWithConsequencePotential" value="false"/> + <param name="keepIsoformInAllConditions" value="true"/> + </section> + <section name="novel_isoform"> + <param name="minORFlength" value="100"/> + <param name="orfMethod" value="longest.AnnotatedWhenPossible"/> + <param name="PTCDistance" value="50"/> + </section> + <section name="extract_sequence"> + <param name="onlySwitchingGenes" value="true"/> + <param name="removeShortAAseq" value="true"/> + <param name="removeLongAAseq" value="false"/> + <param name="removeORFwithStop" value="true"/> + </section> + </conditional> + <output name="switchList" file="test04.RData" ftype="rdata" compare="sim_size" delta="100"/> + <output name="isoformAA" ftype="fasta"> + <assert_contents> + <has_size value="138275" delta="300"/> + <has_text text=">TCONS_00000007"/> + <has_text text="MLLPPGSLSRPRTFSSQPLQT"/> + </assert_contents> + </output> + <output name="isoformNT" ftype="fasta"> + <assert_contents> + <has_size value="780375" delta="300"/> + <has_text text=">TCONS_00000007"/> + <has_text text="GGGTCTCCCTCTGTTGTCCAAGGC"/> + </assert_contents> + </output> + <output name="switchSummary" file="test04_summary.tabular" ftype="tabular"/> + </test> + <!-- Test 05: Extract isoform switches alternative parameters--> + <test expect_num_outputs="1"> + <conditional name="functionMode"> + <param name="selector" value="first_step"/> + <param name="robject" value="test01.RData"/> + <param name="outputs_first" value=""/> + <section name="dexseq"> + <param name="correctForConfoundingFactors" value="true"/> + <param name="overwriteIFvalues" value="true"/> + <param name="reduceToSwitchingGenes" value="true"/> + <param name="reduceFurtherToGenesWithConsequencePotential" value="true"/> + <param name="keepIsoformInAllConditions" value="true"/> + </section> + <section name="novel_isoform"> + <param name="orfMethod" value="mostUpstream"/> + </section> + </conditional> + <output name="switchList" ftype="rdata"> + <assert_contents> + <has_size value="500518" delta="300"/> + </assert_contents> + </output> + </test> + <!--Test 06: generate plots and summaries full analsys--> + <test expect_num_outputs="9"> + <conditional name="functionMode"> + <param name="selector" value="second_step"/> + <param name="robject" value="test04.RData"/> + <section name="analyzeSwitchConsequences"> + <param name="ntCutoff" value="50"/> + <param name="ntJCsimCutoff" value="0.8"/> + <param name="AaCutoff" value="10"/> + <param name="AaFracCutoff" value="0.5"/> + <param name="AaJCsimCutoff" value="0.9"/> + <param name="removeNonConseqSwitches" value="true"/> + </section> + <conditional name="analysis_mode"> + <param name="selector" value="top"/> + <param name="alpha" value="0.05"/> + <param name="dIFcutoff" value="0.1"/> + <param name="n" value="2"/> + <section name="advanced_options"> + <param name="filterForConsequences" value="false"/> + <param name="sortByQvals" value="true"/> + <param name="onlySigIsoforms" value="false"/> + <param name="onlySwitchingGenes" value="true"/> + <param name="countGenes" value="true"/> + <param name="asFractionTotal" value="false"/> + <param name="plotGenes" value="false"/> + <param name="simplifyLocation" value="true"/> + <param name="removeEmptyConsequences" value="false"/> + <param name="analysisOppositeConsequence" value="false"/> + </section> + </conditional> + </conditional> + <output name="switchList" ftype="rdata"> + <assert_contents> + <has_size value="531580" delta="300"/> + </assert_contents> + </output> + <output_collection name="plots_summary" type="list" count="7"> + <element name="consequencesEnrichment" ftype="pdf"> + <assert_contents> + <has_size value="5995" delta="300"/> + </assert_contents> + </element> + <element name="extractConsequencesSummary" ftype="pdf"> + <assert_contents> + <has_size value="5681" delta="300"/> + </assert_contents> + </element> + <element name="splicingEnrichment" ftype="pdf"> + <assert_contents> + <has_size value="6361" delta="300"/> + </assert_contents> + </element> + <element name="splicingGenomewide" ftype="pdf"> + <assert_contents> + <has_size value="68069" delta="300"/> + </assert_contents> + </element> + <element name="splicingSummary" ftype="pdf"> + <assert_contents> + <has_size value="5990" delta="300"/> + </assert_contents> + </element> + <element name="switchGene" ftype="pdf"> + <assert_contents> + <has_size value="3611" delta="300"/> + </assert_contents> + </element> + <element name="volcanoPlot" ftype="pdf"> + <assert_contents> + <has_size value="3611" delta="300"/> + </assert_contents> + </element> + </output_collection> + <output_collection name="genes_consequences" type="list" count="2"> + <element name="1_switch_plot_NADK_aka_NADK" ftype="pdf"> + <assert_contents> + <has_size value="8716" delta="300"/> + </assert_contents> + </element> + <element name="2_switch_plot_PRKCZ_aka_PRKCZ" ftype="pdf"> + <assert_contents> + <has_size value="8463" delta="300"/> + </assert_contents> + </element> + </output_collection> + <output_collection name="genes_wo_consequences" type="list" count="2"> + <element name="1_switch_plot_CLSTN1_aka_CLSTN1" ftype="pdf"> + <assert_contents> + <has_size value="8039" delta="300"/> + </assert_contents> + </element> + <element name="2_switch_plot_ZBTB40_aka_ZBTB40" ftype="pdf"> + <assert_contents> + <has_size value="7506" delta="300"/> + </assert_contents> + </element> + </output_collection> + <output name="mostSwitching" file="test06_switching.tabular" ftype="tabular" lines_diff="4"/> + <output name="consequencesSummary" file="test06_consequences_summary.tabular" ftype="tabular" lines_diff="4"/> + <output name="consequencesEnrichment" file="test06_consequences_enrichment.tabular" ftype="tabular" lines_diff="4"/> + <output name="splicingSummary" file="test06_splicing_summary.tabular" ftype="tabular" lines_diff="4"/> + <output name="splicingEnrichment" file="test06_splicing_enrichment.tabular" ftype="tabular" lines_diff="4"/> + </test> + <!--Test 07: generate plots and summaries full analsys all inputs--> + <test expect_num_outputs="9"> + <conditional name="functionMode"> + <param name="selector" value="second_step"/> + <param name="robject" value="test04.RData"/> + <section name="analyzeSwitchConsequences"> + <param name="ntCutoff" value="20"/> + <param name="ntJCsimCutoff" value="0.5"/> + <param name="AaCutoff" value="10"/> + <param name="AaFracCutoff" value="0.4"/> + <param name="AaJCsimCutoff" value="0.8"/> + <param name="removeNonConseqSwitches" value="false"/> + </section> + <conditional name="analysis_mode"> + <param name="selector" value="top"/> + <param name="alpha" value="0.05"/> + <param name="dIFcutoff" value="0.1"/> + <param name="n" value="2"/> + <section name="advanced_options"> + <param name="filterForConsequences" value="false"/> + <param name="sortByQvals" value="true"/> + <param name="onlySigIsoforms" value="false"/> + <param name="onlySwitchingGenes" value="true"/> + <param name="countGenes" value="true"/> + <param name="asFractionTotal" value="false"/> + <param name="plotGenes" value="false"/> + <param name="simplifyLocation" value="true"/> + <param name="removeEmptyConsequences" value="false"/> + <param name="analysisOppositeConsequence" value="false"/> + </section> + </conditional> + <conditional name="coding_potential"> + <param name="selector" value="cpc2"/> + <param name="analyzeCPC2" value="cpc2_result.txt"/> + <param name="removeNoncodingORFs" value="false"/> + <param name="codingCutoff" value="0.5"/> + </conditional> + <conditional name="protein_domains"> + <param name="selector" value="enabled"/> + <param name="analyzePFAM" value="pfam_results.txt"/> + </conditional> + <conditional name="signal_peptides"> + <param name="selector" value="enabled"/> + <param name="analyzeSignalP" value="signalP_results.txt"/> + <param name="minSignalPeptideProbability" value="0.5"/> + </conditional> + <conditional name="disordered_regions"> + <param name="selector" value="iupred2a"/> + <param name="AanalyzeIUPred2A" value="iupred2a_result.txt.gz"/> + <param name="smoothingWindowSize" value="5"/> + <param name="probabilityCutoff" value="0.5"/> + <param name="minIdrSize" value="30"/> + <param name="annotateBindingSites" value="true"/> + <param name="minIdrBindingSize" value="15"/> + <param name="minIdrBindingOverlapFrac" value="0.8"/> + </conditional> + </conditional> + <output name="switchList" ftype="rdata"> + <assert_contents> + <has_size value="542120" delta="300"/> + </assert_contents> + </output> + <output_collection name="plots_summary" type="list" count="7"> + <element name="consequencesEnrichment" ftype="pdf"> + <assert_contents> + <has_size value="5995" delta="300"/> + </assert_contents> + </element> + <element name="extractConsequencesSummary" ftype="pdf"> + <assert_contents> + <has_size value="6617" delta="300"/> + </assert_contents> + </element> + <element name="splicingEnrichment" ftype="pdf"> + <assert_contents> + <has_size value="6361" delta="300"/> + </assert_contents> + </element> + <element name="splicingGenomewide" ftype="pdf"> + <assert_contents> + <has_size value="68069" delta="300"/> + </assert_contents> + </element> + <element name="splicingSummary" ftype="pdf"> + <assert_contents> + <has_size value="5990" delta="300"/> + </assert_contents> + </element> + <element name="switchGene" ftype="pdf"> + <assert_contents> + <has_size value="3611" delta="300"/> + </assert_contents> + </element> + <element name="volcanoPlot" ftype="pdf"> + <assert_contents> + <has_size value="3611" delta="300"/> + </assert_contents> + </element> + </output_collection> + <output_collection name="genes_consequences" type="list" count="2"> + <element name="1_switch_plot_NADK_aka_NADK" ftype="pdf"> + <assert_contents> + <has_size value="8716" delta="300"/> + </assert_contents> + </element> + <element name="2_switch_plot_PRKCZ_aka_PRKCZ" ftype="pdf"> + <assert_contents> + <has_size value="8463" delta="300"/> + </assert_contents> + </element> + </output_collection> + <output_collection name="genes_wo_consequences" type="list" count="2"> + <element name="1_switch_plot_CLSTN1_aka_CLSTN1" ftype="pdf"> + <assert_contents> + <has_size value="8559" delta="300"/> + </assert_contents> + </element> + <element name="2_switch_plot_ZBTB40_aka_ZBTB40" ftype="pdf"> + <assert_contents> + <has_size value="8051" delta="300"/> + </assert_contents> + </element> + </output_collection> + <output name="mostSwitching" ftype="tabular"> + <assert_contents> + <has_size value="4062" delta="50"/> + <has_text text="RPL11"/> + </assert_contents> + </output> + <output name="consequencesSummary" ftype="tabular"> + <assert_contents> + <has_size value="1192" delta="50"/> + <has_text text="nrGenesWithConsequences"/> + </assert_contents> + </output> + <output name="consequencesEnrichment" ftype="tabular"> + <assert_contents> + <has_size value="1432" delta="50"/> + <has_text text="NMD insensitive (paired with NMD sensitive"/> + </assert_contents> + </output> + <output name="splicingSummary" ftype="tabular"> + <assert_contents> + <has_size value="892" delta="50"/> + <has_text text="MEE in isoform used less"/> + </assert_contents> + </output> + <output name="splicingEnrichment" ftype="tabular"> + <assert_contents> + <has_size value="1157" delta="50"/> + <has_text text="A5 gain (paired with A5 loss)"/> + </assert_contents> + </output> + </test> + <!-- Test 08: analyze single gene--> + <test expect_num_outputs="2"> + <conditional name="functionMode"> + <param name="selector" value="second_step"/> + <param name="robject" value="test04.RData"/> + <conditional name="analysis_mode"> + <param name="selector" value="single"/> + <param name="gene" value="NADK"/> + </conditional> + </conditional> + <output name="single_gene" ftype="pdf" file="test08_single_gene.pdf" compare="sim_size"/> + <output name="switchList" ftype="rdata"> + <assert_contents> + <has_size value="531580" delta="300"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ + +.. class:: infomark + +**Purpose** + +IsoformSwitchAnalyzeR is an easy-to use-R package that enables statistical identification of isoform switching from RNA-seq derived quantification +of novel and/or annotated full-length isoforms. IsoformSwitchAnalyzeR facilitates integration of many sources of (predicted) annotation such as Open +Reading Frame (ORF/CDS), protein domains (via Pfam), signal peptides (via SignalP), Intrinsically Disordered Regions (IDR, via NetSurfP-2 or IUPred2A), +coding potential (via CPAT or CPC2) and sensitivity to Non-sense Mediated Decay (NMD) and more. The combination of identified isoform switches and +their annotation enables IsoformSwitchAnalyzeR to predict potential functional consequences of the identified isoform switches — such as loss of +protein domains — thereby identifying isoform switches of particular interest. Lastly, IsoformSwitchAnalyzeR provides article-ready visualization +methods for isoform switches for individual genes as well as both summary statistics and visualization of the genome-wide changes/consequences of +isoform switches, their consequences and the associated alternative splicing. + +----- + +.. class:: infomark + +**Differential isoform expression (DIE) and differential isoform usage (DIU)** + +Differential isoform expression (DIE) and differential isoform usage (DIU) are related but distinct concepts. DIE assesses the difference of +absolute expression in isoform level. In contrast, DIU assesses the difference of relative expression in isoform level. For example, if the +expression of two isoforms of one gene are 10 and 20 in control and 50 and 100 in case, then there is DIE but no DIU because the relative +expression of the first isoform is 1/3 in both case and control. + +----- + +.. class:: infomark + +**ORF identification methods (novel isoform analysis)** + +- **Longest**: Identifies the longest ORF in the transcript (after filtering via minORFlength). This approach is similar to what the CPAT tool uses in it is analysis of coding potential. +- **LongestAnnotated**: Identifies the longest ORF (after filtering via minORFlength) downstream of an annotated translation start site (which are supplied via the cds argument). +- **Longest.AnnotatedWhenPossible**: A merge between "longestAnnotated" and "longest". For all isoforms where CDS start positions from known isoform overlap, only these CDS starts are considered and the longest ORF is annotated (similar to "longestAnnotated"). All isoforms without any overlapping CDS start sites they will be analysed with the "longest" approach. +- **MostUpstream**: Identifies the most upstream ORF in the transcript (after filtering via minORFlength). +- **MostUpstreamAnnoated**: Identifies the ORF (after filtering via minORFlength) downstream of the most upstream overlapping annotated translation start site (supplied via the cds argument). + + ]]></help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,68 @@ +<macros> + <token name="@TOOL_VERSION@">1.20.0</token> + <token name="@SUFFIX_VERSION@">0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">bioconductor-isoformswitchanalyzer</requirement> + <requirement type="package" version="2.2.1">r-argparse</requirement> + <requirement type="package" version="1.0.10">r-dplyr</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/btz247</citation> + <citation type="doi">10.1158/1541-7786.MCR-16-0459</citation> + </citations> + </xml> + <xml name="xrefs"> + <xrefs> + <xref type="bio.tools">IsoformSwitchAnalyzeR</xref> + <xref type="bioconductor">isoformswitchanalyzer</xref> + </xrefs> + </xml> + <xml name="macro_disordered_regions"> + <param argument="smoothingWindowSize" type="integer" min="1" value="5" label="Smoothing window size" help="An integer indicating how + large a sliding window should be used to calculate a smoothed (via mean) disordered probability score of a particular position in + a peptide. This has as a smoothing effect which prevents IDRs from not being detected (or from being split into sub-IDRs) by a + single residue with low probability. The trade off is worse accuracy of detecting the exact edges of the IDRs. To turn it off + smoothing simply set to 1." /> + <param argument="probabilityCutoff" type="float" min="0" value="0.5" label="Probability cutoff" help="Cutoff applied to the (smoothed) + disordered probability score for calling a residue as disordered. The default, 30 amino acids, is an accepted standard for long IDRs" /> + <param argument="minIdrSize" type="integer" min="0" value="30" label="Minimum IDR size" help="How long a stretch of disordered amino acid + constitute the region part of the Intrinsically Disordered Region (IDR) definition. The default, 30 amino acids, is an accepted + standard for long IDRs" /> + </xml> + <xml name="macro_alpha_difcutoff"> + <param argument="alpha" type="float" min="0" max="1" value="0.05" label="Alpha value" help="The cutoff which the FDR correct p-values must be smaller + than for calling significant switches." /> + <param argument="dIFcutoff" type="float" min="0" max="1" value="0.1" label="dIFcutoff" help="The cutoff which the changes in (absolute) isoform usage + must be larger than before an isoform is considered switching. This cutoff can remove cases where isoforms with (very) low dIF values are deemed + significant and thereby included in the downstream analysis. This cutoff is analogous to having a cutoff on log2 fold change in a normal differential + expression analysis of genes to ensure the genes have a certain effect size. Default is 0.1 (10%)" /> + </xml> + <xml name="macro_ifcutoff" token_value="" token_help=""> + <param argument="IFcutoff" type="float" min="0" max="1" value="@VALUE@" label="IFcutoff" help="@HELP@" /> + </xml> + <xml name="macro_onlysigisoforms1"> + <param argument="onlySigIsoforms" type="boolean" truevalue="--onlySigIsoforms" falsevalue="" checked="false" label="Only significantly differential + used isoforms" help="This parameter indicates whether both isoforms the pairs considered if reduceFurtherToGenesWithConsequenshould be significantly + differential used (as indicated by the alpha and dIFcutoff parameters). Default is disabled (aka only one of the isoforms in a pair should be + significantly differential used)" /> + </xml> + <xml name="macro_onlysigisoforms2"> + <param argument="onlySigIsoforms" type="boolean" truevalue="--onlySigIsoforms" falsevalue="" checked="false" label="Only significantly differential + used isoforms" help="This parameter indicates whether to only consider significant isoforms, meaning only analyzing genes where at least two isoforms + which both have significant usage changes in opposite direction (quite strict). Naturally this only works if the isoform switch test used have isoform + resolution (which the build in *isoformSwitchTestDEXSeq* has). If disabled all isoforms with an absolute dIF value larger than dIFcutoff in a gene with + significant switches (defined by alpha and dIFcutoff) are included in the pairwise comparison" /> + </xml> + <xml name="macro_keeisoforminall" token_checked=""> + <param argument="keepIsoformInAllConditions" type="boolean" truevalue="--keepIsoformInAllConditions" falsevalue="" checked="@CHECKED@" label="Keep isoforms in all conditions" + help="This parameter indicates whether an isoform should be kept in all comparisons even if it is only deemed significant (as defined by the + alpha and dIFcutoff parameters) in one comparison" /> + </xml> + <xml name="macro_onlyswitching"> + <param argument="onlySwitchingGenes" type="boolean" truevalue="--onlySwitchingGenes" falsevalue="" checked="true" label="Only switching genes" help="Only + analyze genes with isoform switches (as indicated by the alpha and dIFcutoff parameters)" /> + </xml> +</macros> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cpc2_result.txt Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,163 @@ +#ID peptide_length Fickett_score pI ORF_integrity coding_probability label +TCONS_00000007 390 0.2582 10.4859008789 1 0.95915 coding +TCONS_00000008 390 0.25739 10.4859008789 1 0.957303 coding +TCONS_00000009 390 0.25739 10.4859008789 1 0.957303 coding +TCONS_00000018 25 0.31765 6.51007080078 1 0.00467786 noncoding +TCONS_00000019 25 0.26913 6.51007080078 1 0.00858439 noncoding +TCONS_00000020 92 0.2912 5.29876708984 1 0.189591 noncoding +TCONS_00000045 803 0.37445 8.87176513672 1 1 coding +TCONS_00000046 639 0.40486 8.06036376953 1 1 coding +TCONS_00000047 639 0.37861 8.06036376953 1 1 coding +TCONS_00000048 705 0.37861 8.63128662109 1 1 coding +TCONS_00000049 428 0.36298 8.53863525391 1 0.999999 coding +TCONS_00000066 635 0.44536 9.07708740234 1 1 coding +TCONS_00000067 587 0.43101 9.26470947266 1 1 coding +TCONS_00000068 508 0.43101 9.27154541016 1 1 coding +TCONS_00000173 245 0.28197 7.08636474609 1 0.979227 coding +TCONS_00000174 635 0.46597 6.21282958984 1 1 coding +TCONS_00000175 196 0.37128 9.26434326172 1 0.958991 coding +TCONS_00000176 293 0.45712 6.01593017578 1 0.999998 coding +TCONS_00000190 240 0.44582 10.256652832 1 0.999427 coding +TCONS_00000191 239 0.46696 10.256652832 1 0.999722 coding +TCONS_00000192 176 0.32021 8.80865478516 1 0.733325 coding +TCONS_00000219 393 0.40691 9.05352783203 1 1 coding +TCONS_00000220 643 0.41764 9.43267822266 1 1 coding +TCONS_00000221 1045 0.46291 6.78863525391 1 1 coding +TCONS_00000222 1044 0.45332 6.78863525391 1 1 coding +TCONS_00000223 1069 0.44806 6.76422119141 1 1 coding +TCONS_00000234 1154 0.39339 8.66094970703 1 1 coding +TCONS_00000235 1771 0.41107 5.38665771484 1 1 coding +TCONS_00000236 1817 0.41259 5.41876220703 1 1 coding +TCONS_00000237 1798 0.43495 5.29583740234 1 1 coding +TCONS_00000240 1810 0.43495 5.38397216797 1 1 coding +TCONS_00000245 139 0.34852 5.82745361328 1 0.76941 coding +TCONS_00000246 165 0.31325 7.64581298828 1 0.703493 coding +TCONS_00000248 123 0.33613 10.3421020508 1 0.264633 noncoding +TCONS_00000298 758 0.45593 6.52203369141 1 1 coding +TCONS_00000299 758 0.46041 6.52203369141 1 1 coding +TCONS_00000312 667 0.36679 6.41033935547 1 1 coding +TCONS_00000313 387 0.30609 6.46966552734 1 0.999993 coding +TCONS_00000339 227 0.33385 9.29840087891 1 0.961376 coding +TCONS_00000340 1683 0.47452 6.66705322266 1 1 coding +TCONS_00000341 1719 0.4579 7.02398681641 1 1 coding +TCONS_00000342 98 0.3518 4.85064697266 1 0.369301 noncoding +TCONS_00000343 600 0.45355 4.98431396484 -1 0.998486 coding +TCONS_00000344 1482 0.47872 6.41021728516 1 1 coding +TCONS_00000345 116 0.30429 10.1972045898 -1 0.162618 noncoding +TCONS_00000356 254 0.40674 5.39898681641 1 0.999957 coding +TCONS_00000357 254 0.42462 5.39898681641 1 0.999972 coding +TCONS_00000358 136 0.30721 10.6095581055 1 0.237752 noncoding +TCONS_00000359 254 0.40509 5.39898681641 1 0.999955 coding +TCONS_00000360 254 0.38471 5.39898681641 1 0.999917 coding +TCONS_00000411 102 0.3652 10.3181762695 1 0.208176 noncoding +TCONS_00000412 165 0.30507 8.96710205078 1 0.542238 coding +TCONS_00000413 199 0.32603 9.98638916016 1 0.824741 coding +TCONS_00000414 177 0.30012 12.1777954102 1 0.240739 noncoding +TCONS_00000415 289 0.28925 6.91888427734 1 0.997798 coding +TCONS_00000417 93 0.29021 5.77752685547 1 0.154229 noncoding +TCONS_00000418 171 0.34593 9.22052001953 1 0.793203 coding +TCONS_00000493 273 0.31388 5.44525146484 1 0.999661 coding +TCONS_00000494 63 0.38578 5.38140869141 -1 0.0255393 noncoding +TCONS_00000507 1240 0.41886 6.11456298828 1 1 coding +TCONS_00000508 1240 0.41886 6.11456298828 1 1 coding +TCONS_00000509 1128 0.4155 6.19488525391 1 1 coding +TCONS_00000558 905 0.35693 11.8355102539 1 1 coding +TCONS_00000559 917 0.37177 11.8427124023 1 1 coding +TCONS_00000560 707 0.41144 12.0840454102 -1 0.590766 coding +TCONS_00000561 799 0.39573 12.0907592773 -1 0.384218 noncoding +TCONS_00003865 131 0.33101 4.31634521484 1 0.8266 coding +TCONS_00003866 363 0.47306 4.75836181641 1 1 coding +TCONS_00003867 349 0.43811 4.98883056641 1 1 coding +TCONS_00003869 255 0.4393 5.52716064453 1 0.999977 coding +TCONS_00003870 95 0.36513 5.01495361328 1 0.348122 noncoding +TCONS_00003880 565 0.40886 5.74761962891 1 1 coding +TCONS_00003881 760 0.41105 6.65594482422 1 1 coding +TCONS_00003882 835 0.43697 5.69305419922 1 1 coding +TCONS_00003901 451 0.42628 6.42291259766 1 1 coding +TCONS_00003902 445 0.42628 6.42291259766 1 1 coding +TCONS_00003903 342 0.434 6.46282958984 1 1 coding +TCONS_00003904 443 0.42212 6.74627685547 1 1 coding +TCONS_00003905 434 0.39568 6.62261962891 1 1 coding +TCONS_00003911 299 0.29328 10.7870483398 1 0.932855 coding +TCONS_00003912 299 0.3229 10.7870483398 1 0.983173 coding +TCONS_00003913 227 0.29166 9.14459228516 1 0.865354 coding +TCONS_00003914 521 0.32085 10.2689819336 1 0.999992 coding +TCONS_00003915 299 0.37046 10.7870483398 1 0.998482 coding +TCONS_00003916 299 0.37606 10.7870483398 1 0.998852 coding +TCONS_00003919 88 0.32247 8.95391845703 1 0.0768122 noncoding +TCONS_00003920 175 0.40594 5.28411865234 1 0.993375 coding +TCONS_00003921 400 0.41262 6.09429931641 1 1 coding +TCONS_00003937 247 0.35124 6.90704345703 1 0.998433 coding +TCONS_00003938 200 0.27379 9.26190185547 1 0.612922 coding +TCONS_00003939 406 0.33427 8.64654541016 1 0.999988 coding +TCONS_00003940 406 0.36022 8.64654541016 1 0.999998 coding +TCONS_00003941 406 0.36022 8.64654541016 1 0.999998 coding +TCONS_00003942 255 0.44417 8.50299072266 1 0.999875 coding +TCONS_00003943 237 0.42944 6.72222900391 1 0.999783 coding +TCONS_00003959 247 0.35124 7.68707275391 1 0.997117 coding +TCONS_00003962 267 0.38203 8.27752685547 1 0.99952 coding +TCONS_00004002 1230 0.41804 6.02728271484 1 1 coding +TCONS_00004003 1542 0.39677 5.94085693359 1 1 coding +TCONS_00004004 461 0.42883 6.36956787109 1 1 coding +TCONS_00004005 436 0.45545 6.78009033203 1 1 coding +TCONS_00004006 261 0.3185 8.07342529297 1 0.992714 coding +TCONS_00004033 330 0.48037 7.66522216797 1 1 coding +TCONS_00004034 351 0.46903 8.57061767578 1 1 coding +TCONS_00004035 381 0.45317 8.85467529297 1 1 coding +TCONS_00004036 266 0.47782 7.69989013672 1 0.999977 coding +TCONS_00004037 371 0.47753 6.83697509766 1 1 coding +TCONS_00004042 235 0.39553 5.70355224609 1 0.999737 coding +TCONS_00004044 193 0.3727 4.98150634766 1 0.996425 coding +TCONS_00004046 418 0.37805 6.01275634766 1 1 coding +TCONS_00004049 427 0.38921 6.00994873047 1 1 coding +TCONS_00004051 182 0.29544 6.61358642578 1 0.869812 coding +TCONS_00004066 540 0.35446 5.74041748047 1 1 coding +TCONS_00004067 231 0.37327 4.52069091797 1 0.999796 coding +TCONS_00004068 598 0.42983 5.16754150391 1 1 coding +TCONS_00004102 336 0.43537 9.26934814453 1 0.999997 coding +TCONS_00004103 271 0.41692 8.95745849609 1 0.999841 coding +TCONS_00004104 239 0.35865 9.64447021484 1 0.988602 coding +TCONS_00004110 982 0.44298 4.81036376953 1 1 coding +TCONS_00004111 972 0.44298 4.82574462891 1 1 coding +TCONS_00004112 963 0.44298 4.86297607422 1 1 coding +TCONS_00004208 280 0.43625 8.52239990234 1 0.999963 coding +TCONS_00004209 156 0.44836 6.21368408203 1 0.97777 coding +TCONS_00004210 803 0.45827 7.30816650391 1 1 coding +TCONS_00004224 1118 0.46023 4.64739990234 1 1 coding +TCONS_00004225 421 0.45899 4.53948974609 -1 0.973057 coding +TCONS_00004226 421 0.44359 4.57159423828 -1 0.96468 coding +TCONS_00004227 675 0.45899 4.70831298828 -1 0.999734 coding +TCONS_00004228 66 0.33686 6.80340576172 1 0.0354495 noncoding +TCONS_00004229 58 0.29129 5.33721923828 1 0.0407299 noncoding +TCONS_00004230 58 0.31538 5.33721923828 1 0.0352243 noncoding +TCONS_00004240 290 0.33959 9.24139404297 1 0.997755 coding +TCONS_00004241 690 0.33757 8.11077880859 1 1 coding +TCONS_00004265 244 0.27217 10.4834594727 1 0.687188 coding +TCONS_00004266 79 0.43829 4.32464599609 1 0.437694 noncoding +TCONS_00004267 707 0.47238 6.42047119141 1 1 coding +TCONS_00004269 848 0.47412 5.32684326172 1 1 coding +TCONS_00004270 895 0.47183 5.22821044922 1 1 coding +TCONS_00004271 893 0.44107 5.22821044922 1 1 coding +TCONS_00004310 54 0.37557 9.51605224609 1 0.0330365 noncoding +TCONS_00004311 79 0.32206 5.22454833984 1 0.1083 noncoding +TCONS_00004325 213 0.34713 9.88677978516 1 0.941803 coding +TCONS_00004326 402 0.33446 10.098449707 1 0.999891 coding +TCONS_00004327 516 0.35013 9.76885986328 1 1 coding +TCONS_00004328 554 0.39012 9.68572998047 1 1 coding +TCONS_00004329 516 0.38144 9.76885986328 1 1 coding +TCONS_00004330 554 0.44952 9.68572998047 1 1 coding +TCONS_00004332 344 0.41511 9.41571044922 1 0.999995 coding +TCONS_00004333 134 0.44227 4.53216552734 1 0.966241 coding +TCONS_00004375 244 0.43202 9.56231689453 1 0.999455 coding +TCONS_00004376 637 0.47308 8.22589111328 1 1 coding +TCONS_00004377 634 0.47308 8.22589111328 1 1 coding +TCONS_00004378 533 0.47513 9.19793701172 1 1 coding +TCONS_00004379 536 0.47513 9.19793701172 1 1 coding +TCONS_00004380 495 0.46189 9.26446533203 1 1 coding +TCONS_00004381 596 0.45922 8.41583251953 1 1 coding +TCONS_00004382 474 0.47513 9.34429931641 1 1 coding +TCONS_00004439 288 0.3259 9.63568115234 1 0.993329 coding +TCONS_00004440 243 0.32342 9.61492919922 1 0.961925 coding +TCONS_00004441 335 0.33728 9.78558349609 1 0.999271 coding +TCONS_00004442 335 0.33728 9.78558349609 1 0.999271 coding +TCONS_00004443 115 0.32346 9.71331787109 1 0.190316 noncoding
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pfam_results.txt Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,369 @@ +# pfam_scan.pl, run at Mon Feb 4 16:16:14 2019 +# +# Copyright (c) 2009 Genome Research Ltd +# Freely distributed under the GNU +# General Public License +# +# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk), +# Rob Finn (rdf@sanger.ac.uk) +# +# This is free software; you can redistribute it and/or modify it under +# the terms of the GNU General Public License as published by the Free Software +# Foundation; either version 2 of the License, or (at your option) any later version. +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +# details. +# +# You should have received a copy of the GNU General Public License along with +# this program. If not, see <http://www.gnu.org/licenses/>. +# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = +# query sequence file: 01_intermediary_test_data_AA.fasta +# cpu number specified: 20 +# searching against: /aura-internal/software/PfamScan/datafiles//Pfam-A.hmm, with cut off --cut_ga +# resolve clan overlaps: on +# predict active sites: on +# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = +# +# <seq id> <alignment start> <alignment end> <envelope start> <envelope end> <hmm acc> <hmm name> <type> <hmm start> <hmm end> <hmm length> <bit score> <E-value> <significance> <clan> <predicted_active_site_residues> + +TCONS_00000045 227 714 227 714 PF00858.19 ASC Family 1 439 439 277.4 1.7e-82 1 No_clan +TCONS_00000046 63 550 63 550 PF00858.19 ASC Family 1 439 439 278.4 8.4e-83 1 No_clan +TCONS_00000047 63 550 63 550 PF00858.19 ASC Family 1 439 439 278.4 8.4e-83 1 No_clan +TCONS_00000048 129 616 129 616 PF00858.19 ASC Family 1 439 439 277.9 1.2e-82 1 No_clan +TCONS_00000049 92 339 89 339 PF00858.19 ASC Family 199 439 439 182.9 8e-54 1 No_clan +TCONS_00000066 24 94 20 102 PF12037.3 DUF3523 Family 4 73 276 64.5 7.2e-18 1 No_clan +TCONS_00000066 141 334 131 334 PF12037.3 DUF3523 Family 72 276 276 241.7 7e-72 1 No_clan +TCONS_00000066 396 522 396 523 PF00004.24 AAA Family 1 131 132 70.7 1.3e-19 1 CL0023 +TCONS_00000067 24 286 20 286 PF12037.3 DUF3523 Family 4 276 276 326.1 1.2e-97 1 No_clan +TCONS_00000067 348 474 348 475 PF00004.24 AAA Family 1 131 132 70.8 1.1e-19 1 CL0023 +TCONS_00000068 1 207 1 207 PF12037.3 DUF3523 Family 59 276 276 251.4 7.7e-75 1 No_clan +TCONS_00000068 269 395 269 396 PF00004.24 AAA Family 1 131 132 71.2 8.8e-20 1 CL0023 +TCONS_00000173 25 63 25 63 PF00097.20 zf-C3HC4 Domain 1 41 41 23.9 2.3e-05 1 CL0229 +TCONS_00000174 25 63 25 63 PF00097.20 zf-C3HC4 Domain 1 41 41 22.1 8.4e-05 1 CL0229 +TCONS_00000174 95 144 93 145 PF00643.19 zf-B_box Domain 3 41 42 35.4 7.1e-09 1 No_clan +TCONS_00000190 3 86 3 88 PF05485.7 THAP Domain 1 83 85 71.5 4.6e-20 1 No_clan +TCONS_00000191 3 86 3 88 PF05485.7 THAP Domain 1 83 85 71.5 4.6e-20 1 No_clan +TCONS_00000192 3 86 3 88 PF05485.7 THAP Domain 1 83 85 72.5 2.3e-20 1 No_clan +TCONS_00000219 46 171 46 171 PF09779.4 Ima1_N Family 1 131 131 134.7 2.5e-39 1 No_clan +TCONS_00000219 192 391 191 392 PF10476.4 DUF2448 Family 2 203 204 285.0 2.7e-85 1 No_clan +TCONS_00000220 46 171 46 171 PF09779.4 Ima1_N Family 1 131 131 133.5 6.1e-39 1 No_clan +TCONS_00000220 192 388 191 392 PF10476.4 DUF2448 Family 2 200 204 280.1 8.5e-84 1 No_clan +TCONS_00000221 31 108 31 108 PF02192.11 PI3K_p85B Family 1 78 78 112.5 4.5e-33 1 No_clan +TCONS_00000221 176 281 175 281 PF00794.13 PI3K_rbd Family 2 107 107 105.5 1.2e-30 1 CL0072 +TCONS_00000221 338 466 337 472 PF00792.19 PI3K_C2 Domain 2 136 143 120.0 6.1e-35 1 CL0154 +TCONS_00000221 502 682 499 684 PF00613.15 PI3Ka Family 4 183 185 184.5 1e-54 1 CL0020 +TCONS_00000221 775 989 773 991 PF00454.22 PI3_PI4_kinase Family 3 233 235 194.7 1.6e-57 1 No_clan +TCONS_00000222 31 108 31 108 PF02192.11 PI3K_p85B Family 1 78 78 112.5 4.4e-33 1 No_clan +TCONS_00000222 176 281 175 281 PF00794.13 PI3K_rbd Family 2 107 107 105.5 1.2e-30 1 CL0072 +TCONS_00000222 338 466 337 472 PF00792.19 PI3K_C2 Domain 2 136 143 120.0 6.1e-35 1 CL0154 +TCONS_00000222 506 681 500 683 PF00613.15 PI3Ka Family 9 183 185 182.4 4.5e-54 1 CL0020 +TCONS_00000222 774 988 772 990 PF00454.22 PI3_PI4_kinase Family 3 233 235 194.7 1.6e-57 1 No_clan +TCONS_00000223 31 108 31 108 PF02192.11 PI3K_p85B Family 1 78 78 112.4 4.6e-33 1 No_clan +TCONS_00000223 176 261 175 265 PF00794.13 PI3K_rbd Family 2 87 107 75.7 2.2e-21 1 CL0072 +TCONS_00000223 303 431 302 437 PF00792.19 PI3K_C2 Domain 2 136 143 120.0 6.3e-35 1 CL0154 +TCONS_00000223 526 706 523 708 PF00613.15 PI3Ka Family 4 183 185 184.4 1.1e-54 1 CL0020 +TCONS_00000223 799 1013 797 1015 PF00454.22 PI3_PI4_kinase Family 3 233 235 194.6 1.6e-57 1 No_clan +TCONS_00000234 11 348 11 348 PF00225.18 Kinesin Domain 1 335 335 390.9 3.3e-117 1 CL0023 +TCONS_00000234 512 581 510 581 PF00498.21 FHA Family 3 68 68 31.3 1.6e-07 1 CL0357 +TCONS_00000235 11 348 11 348 PF00225.18 Kinesin Domain 1 335 335 389.8 6.9e-117 1 CL0023 +TCONS_00000235 512 581 510 581 PF00498.21 FHA Family 3 68 68 30.5 2.7e-07 1 CL0357 +TCONS_00000235 799 846 799 846 PF12423.3 KIF1B Family 1 45 45 42.1 6e-11 1 No_clan +TCONS_00000235 1220 1367 1220 1368 PF12473.3 DUF3694 Family 1 139 140 148.7 7.6e-44 1 No_clan +TCONS_00000235 1657 1750 1656 1753 PF00169.24 PH Domain 2 101 104 50.3 2.2e-13 1 CL0266 +TCONS_00000236 11 354 11 354 PF00225.18 Kinesin Domain 1 335 335 388.0 2.4e-116 1 CL0023 +TCONS_00000236 558 627 556 627 PF00498.21 FHA Family 3 68 68 30.5 2.8e-07 1 CL0357 +TCONS_00000236 845 892 845 892 PF12423.3 KIF1B Family 1 45 45 42.1 6.2e-11 1 No_clan +TCONS_00000236 1266 1413 1266 1414 PF12473.3 DUF3694 Family 1 139 140 148.7 7.8e-44 1 No_clan +TCONS_00000236 1703 1796 1702 1799 PF00169.24 PH Domain 2 101 104 50.2 2.2e-13 1 CL0266 +TCONS_00000237 11 354 11 354 PF00225.18 Kinesin Domain 1 335 335 388.1 2.4e-116 1 CL0023 +TCONS_00000237 532 601 530 601 PF00498.21 FHA Family 3 68 68 30.5 2.8e-07 1 CL0357 +TCONS_00000237 819 866 819 866 PF12423.3 KIF1B Family 1 45 45 42.1 6.1e-11 1 No_clan +TCONS_00000237 1240 1387 1240 1388 PF12473.3 DUF3694 Family 1 139 140 148.7 7.7e-44 1 No_clan +TCONS_00000237 1677 1770 1676 1773 PF00169.24 PH Domain 2 101 104 50.2 2.2e-13 1 CL0266 +TCONS_00000240 11 354 11 354 PF00225.18 Kinesin Domain 1 335 335 388.1 2.4e-116 1 CL0023 +TCONS_00000240 544 613 542 613 PF00498.21 FHA Family 3 68 68 30.5 2.8e-07 1 CL0357 +TCONS_00000240 831 878 831 878 PF12423.3 KIF1B Family 1 45 45 42.1 6.2e-11 1 No_clan +TCONS_00000240 1252 1399 1252 1400 PF12473.3 DUF3694 Family 1 139 140 148.7 7.8e-44 1 No_clan +TCONS_00000240 1689 1782 1688 1785 PF00169.24 PH Domain 2 101 104 50.2 2.2e-13 1 CL0266 +TCONS_00000245 17 92 17 92 PF15630.1 CENP-S Family 1 76 76 116.4 4.5e-34 1 CL0012 +TCONS_00000246 17 92 17 92 PF15630.1 CENP-S Family 1 76 76 115.8 6.9e-34 1 CL0012 +TCONS_00000246 147 163 146 163 PF03002.10 Somatostatin Family 2 18 18 33.4 2.2e-08 1 No_clan +TCONS_00000298 99 258 99 259 PF00350.18 Dynamin_N Family 1 167 168 82.8 2.3e-23 1 CL0023 +TCONS_00000298 586 755 586 756 PF04799.8 Fzo_mitofusin Family 1 170 171 275.8 8.5e-83 1 No_clan +TCONS_00000299 99 258 99 259 PF00350.18 Dynamin_N Family 1 167 168 82.8 2.3e-23 1 CL0023 +TCONS_00000299 586 755 586 756 PF04799.8 Fzo_mitofusin Family 1 170 171 275.8 8.5e-83 1 No_clan +TCONS_00000339 93 141 60 141 PF00856.23 SET Family 113 162 162 29.6 7.3e-07 1 No_clan +TCONS_00000340 93 141 41 141 PF00856.23 SET Family 113 162 162 25.7 1.1e-05 1 No_clan +TCONS_00000340 360 382 360 383 PF13894.1 zf-C2H2_4 Domain 1 23 24 16.9 0.0057 1 CL0361 +TCONS_00000340 390 412 390 412 PF00096.21 zf-C2H2 Domain 1 23 23 17.5 0.0036 1 CL0361 +TCONS_00000340 483 506 483 506 PF13894.1 zf-C2H2_4 Domain 1 24 24 17.7 0.003 1 CL0361 +TCONS_00000340 1134 1156 1134 1157 PF13894.1 zf-C2H2_4 Domain 1 23 24 10.0 0.9 1 CL0361 +TCONS_00000340 1191 1214 1191 1214 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.8 1 1 CL0361 +TCONS_00000340 1455 1473 1455 1475 PF13894.1 zf-C2H2_4 Domain 1 19 24 13.5 0.068 1 CL0361 +TCONS_00000341 93 141 41 141 PF00856.23 SET Family 113 162 162 25.7 1.2e-05 1 No_clan +TCONS_00000341 360 382 360 383 PF13894.1 zf-C2H2_4 Domain 1 23 24 16.8 0.0058 1 CL0361 +TCONS_00000341 390 412 390 412 PF00096.21 zf-C2H2 Domain 1 23 23 17.5 0.0037 1 CL0361 +TCONS_00000341 483 506 483 506 PF13894.1 zf-C2H2_4 Domain 1 24 24 17.7 0.0031 1 CL0361 +TCONS_00000341 1134 1156 1134 1157 PF13894.1 zf-C2H2_4 Domain 1 23 24 9.9 0.92 1 CL0361 +TCONS_00000341 1191 1214 1191 1214 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.7 1.1 1 CL0361 +TCONS_00000341 1455 1473 1455 1475 PF13894.1 zf-C2H2_4 Domain 1 19 24 13.4 0.07 1 CL0361 +TCONS_00000342 9 56 2 56 PF00856.23 SET Family 114 162 162 31.0 2.7e-07 1 No_clan +TCONS_00000343 117 139 117 140 PF13894.1 zf-C2H2_4 Domain 1 23 24 18.5 0.0018 1 CL0361 +TCONS_00000343 147 169 147 169 PF00096.21 zf-C2H2 Domain 1 23 23 19.1 0.0011 1 CL0361 +TCONS_00000343 240 263 240 263 PF13894.1 zf-C2H2_4 Domain 1 24 24 19.3 0.00093 1 CL0361 +TCONS_00000344 159 181 159 182 PF13894.1 zf-C2H2_4 Domain 1 23 24 17.1 0.0049 1 CL0361 +TCONS_00000344 189 211 189 211 PF00096.21 zf-C2H2 Domain 1 23 23 17.7 0.0031 1 CL0361 +TCONS_00000344 282 305 282 305 PF13894.1 zf-C2H2_4 Domain 1 24 24 17.9 0.0026 1 CL0361 +TCONS_00000344 933 955 933 956 PF13894.1 zf-C2H2_4 Domain 1 23 24 10.2 0.78 1 CL0361 +TCONS_00000344 990 1013 990 1013 PF13894.1 zf-C2H2_4 Domain 1 24 24 10.0 0.91 1 CL0361 +TCONS_00000344 1254 1272 1254 1274 PF13894.1 zf-C2H2_4 Domain 1 19 24 13.7 0.059 1 CL0361 +TCONS_00000356 6 240 6 240 PF15345.1 TMEM51 Family 1 233 233 339.3 1.2e-101 1 No_clan +TCONS_00000357 6 240 6 240 PF15345.1 TMEM51 Family 1 233 233 339.3 1.2e-101 1 No_clan +TCONS_00000358 6 120 6 132 PF15345.1 TMEM51 Family 1 113 233 163.8 4.8e-48 1 No_clan +TCONS_00000359 6 240 6 240 PF15345.1 TMEM51 Family 1 233 233 339.3 1.2e-101 1 No_clan +TCONS_00000360 6 240 6 240 PF15345.1 TMEM51 Family 1 233 233 339.3 1.2e-101 1 No_clan +TCONS_00000411 2 40 1 44 PF00024.21 PAN_1 Domain 37 77 79 29.3 4.9e-07 1 CL0168 +TCONS_00000412 2 40 1 43 PF00024.21 PAN_1 Domain 37 77 79 28.2 1.1e-06 1 CL0168 +TCONS_00000412 47 81 47 91 PF00051.13 Kringle Domain 1 35 79 33.7 2.8e-08 1 No_clan +TCONS_00000412 112 149 89 149 PF00051.13 Kringle Domain 43 79 79 48.9 4.9e-13 1 No_clan +TCONS_00000413 6 42 2 42 PF00051.13 Kringle Domain 44 79 79 47.5 1.3e-12 1 No_clan +TCONS_00000413 47 82 47 92 PF00051.13 Kringle Domain 1 37 79 38.2 1.1e-09 1 No_clan +TCONS_00000415 2 40 1 43 PF00024.21 PAN_1 Domain 37 77 79 26.9 2.8e-06 1 CL0168 +TCONS_00000415 47 81 47 93 PF00051.13 Kringle Domain 1 35 79 32.6 6.3e-08 1 No_clan +TCONS_00000415 112 149 87 149 PF00051.13 Kringle Domain 43 79 79 47.6 1.3e-12 1 No_clan +TCONS_00000415 154 231 154 231 PF00051.13 Kringle Domain 1 79 79 101.3 2.1e-29 1 No_clan +TCONS_00000415 246 287 246 288 PF00051.13 Kringle Domain 1 43 79 41.3 1.2e-10 1 No_clan +TCONS_00000417 41 68 2 68 PF00051.13 Kringle Domain 53 79 79 30.6 2.6e-07 1 No_clan +TCONS_00000418 67 169 62 170 PF00089.21 Trypsin Domain 9 111 220 71.8 5.8e-20 1 CL0124 +TCONS_00000493 173 205 171 213 PF00057.13 Ldl_recept_a Repeat 3 34 37 30.2 2.8e-07 1 No_clan +TCONS_00000507 18 114 14 116 PF00651.26 BTB Domain 5 108 111 73.9 9.1e-21 1 CL0033 +TCONS_00000507 809 830 807 830 PF13894.1 zf-C2H2_4 Domain 3 24 24 12.1 0.18 1 CL0361 +TCONS_00000507 851 874 850 875 PF13465.1 zf-H2C2_2 Domain 2 25 26 24.1 2.9e-05 1 CL0361 +TCONS_00000507 908 931 907 932 PF13465.1 zf-H2C2_2 Domain 2 25 26 31.7 1.1e-07 1 CL0361 +TCONS_00000507 950 973 950 973 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.4 1.4 1 CL0361 +TCONS_00000507 978 1000 978 1000 PF00096.21 zf-C2H2 Domain 1 23 23 23.6 4.1e-05 1 CL0361 +TCONS_00000507 1006 1029 1006 1029 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.1 1.7 1 CL0361 +TCONS_00000507 1047 1069 1046 1069 PF13894.1 zf-C2H2_4 Domain 2 24 24 11.9 0.21 1 CL0361 +TCONS_00000507 1135 1158 1135 1158 PF13894.1 zf-C2H2_4 Domain 1 24 24 16.9 0.0055 1 CL0361 +TCONS_00000508 18 114 14 116 PF00651.26 BTB Domain 5 108 111 73.9 9.1e-21 1 CL0033 +TCONS_00000508 809 830 807 830 PF13894.1 zf-C2H2_4 Domain 3 24 24 12.1 0.18 1 CL0361 +TCONS_00000508 851 874 850 875 PF13465.1 zf-H2C2_2 Domain 2 25 26 24.1 2.9e-05 1 CL0361 +TCONS_00000508 908 931 907 932 PF13465.1 zf-H2C2_2 Domain 2 25 26 31.7 1.1e-07 1 CL0361 +TCONS_00000508 950 973 950 973 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.4 1.4 1 CL0361 +TCONS_00000508 978 1000 978 1000 PF00096.21 zf-C2H2 Domain 1 23 23 23.6 4.1e-05 1 CL0361 +TCONS_00000508 1006 1029 1006 1029 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.1 1.7 1 CL0361 +TCONS_00000508 1047 1069 1046 1069 PF13894.1 zf-C2H2_4 Domain 2 24 24 11.9 0.21 1 CL0361 +TCONS_00000508 1135 1158 1135 1158 PF13894.1 zf-C2H2_4 Domain 1 24 24 16.9 0.0055 1 CL0361 +TCONS_00000509 18 114 14 116 PF00651.26 BTB Domain 5 108 111 74.1 8e-21 1 CL0033 +TCONS_00000509 697 718 695 718 PF13894.1 zf-C2H2_4 Domain 3 24 24 12.3 0.16 1 CL0361 +TCONS_00000509 739 762 738 763 PF13465.1 zf-H2C2_2 Domain 2 25 26 24.2 2.6e-05 1 CL0361 +TCONS_00000509 796 819 795 820 PF13465.1 zf-H2C2_2 Domain 2 25 26 31.9 9.9e-08 1 CL0361 +TCONS_00000509 838 861 838 861 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.5 1.3 1 CL0361 +TCONS_00000509 866 888 866 888 PF00096.21 zf-C2H2 Domain 1 23 23 23.8 3.7e-05 1 CL0361 +TCONS_00000509 894 917 894 917 PF13894.1 zf-C2H2_4 Domain 1 24 24 9.3 1.5 1 CL0361 +TCONS_00000509 935 957 934 957 PF13894.1 zf-C2H2_4 Domain 2 24 24 12.1 0.19 1 CL0361 +TCONS_00000509 1023 1046 1023 1046 PF13894.1 zf-C2H2_4 Domain 1 24 24 17.0 0.0049 1 CL0361 +TCONS_00000558 45 116 45 118 PF01480.12 PWI Family 1 75 77 104.0 3.2e-30 1 No_clan +TCONS_00000559 45 116 45 118 PF01480.12 PWI Family 1 75 77 104.0 3.3e-30 1 No_clan +TCONS_00000560 6 77 6 79 PF01480.12 PWI Family 1 75 77 104.4 2.3e-30 1 No_clan +TCONS_00000561 2 33 1 35 PF01480.12 PWI Family 45 75 77 36.0 5.3e-09 1 No_clan +TCONS_00003866 103 163 97 166 PF13499.1 EF-hand_7 Domain 2 63 66 35.6 7.4e-09 1 CL0220 +TCONS_00003866 287 305 283 307 PF13202.1 EF-hand_5 Domain 6 23 25 13.2 0.04 1 CL0220 +TCONS_00003867 103 163 97 166 PF13499.1 EF-hand_7 Domain 2 63 66 35.7 7e-09 1 CL0220 +TCONS_00003867 287 305 283 306 PF13202.1 EF-hand_5 Domain 6 23 25 13.6 0.031 1 CL0220 +TCONS_00003869 103 163 93 166 PF13499.1 EF-hand_7 Domain 2 63 66 36.5 3.9e-09 1 CL0220 +TCONS_00003880 1 92 1 93 PF00169.24 PH Domain 3 103 104 46.7 2.9e-12 1 CL0266 +TCONS_00003880 134 250 133 251 PF01412.13 ArfGap Domain 2 116 117 140.2 2.3e-41 1 No_clan +TCONS_00003880 403 494 402 496 PF12796.2 Ank_2 Family 2 87 89 57.3 1.4e-15 1 CL0465 +TCONS_00003881 227 320 227 321 PF00169.24 PH Domain 1 103 104 48.5 7.9e-13 1 CL0266 +TCONS_00003881 362 478 361 479 PF01412.13 ArfGap Domain 2 116 117 139.6 3.6e-41 1 No_clan +TCONS_00003881 598 689 597 691 PF12796.2 Ank_2 Family 2 87 89 56.7 2.2e-15 1 CL0465 +TCONS_00003882 269 362 269 363 PF00169.24 PH Domain 1 103 104 48.3 9e-13 1 CL0266 +TCONS_00003882 404 520 403 521 PF01412.13 ArfGap Domain 2 116 117 139.4 4.1e-41 1 No_clan +TCONS_00003882 673 764 672 766 PF12796.2 Ank_2 Family 2 87 89 56.5 2.6e-15 1 CL0465 +TCONS_00003901 38 145 33 156 PF07686.12 V-set Domain 6 103 114 29.4 5.8e-07 1 CL0011 +TCONS_00003901 171 277 161 291 PF07686.12 V-set Domain 8 101 114 40.7 1.7e-10 1 CL0011 +TCONS_00003902 38 145 33 156 PF07686.12 V-set Domain 6 103 114 29.4 5.6e-07 1 CL0011 +TCONS_00003902 171 277 161 291 PF07686.12 V-set Domain 8 101 114 40.7 1.7e-10 1 CL0011 +TCONS_00003903 70 176 59 190 PF07686.12 V-set Domain 8 101 114 41.5 1e-10 1 CL0011 +TCONS_00003904 38 145 33 156 PF07686.12 V-set Domain 6 103 114 29.4 5.6e-07 1 CL0011 +TCONS_00003904 171 277 161 291 PF07686.12 V-set Domain 8 101 114 40.7 1.7e-10 1 CL0011 +TCONS_00003905 29 136 24 147 PF07686.12 V-set Domain 6 103 114 29.5 5.4e-07 1 CL0011 +TCONS_00003905 162 268 152 282 PF07686.12 V-set Domain 8 101 114 40.8 1.6e-10 1 CL0011 +TCONS_00003911 5 66 1 90 PF02984.14 Cyclin_C Domain 32 93 118 24.0 2.7e-05 1 CL0065 +TCONS_00003912 5 66 1 90 PF02984.14 Cyclin_C Domain 32 93 118 24.0 2.7e-05 1 CL0065 +TCONS_00003913 72 191 54 192 PF00134.18 Cyclin_N Domain 25 126 127 38.3 7.9e-10 1 CL0065 +TCONS_00003914 72 191 55 192 PF00134.18 Cyclin_N Domain 25 126 127 35.8 5e-09 1 CL0065 +TCONS_00003914 215 288 195 312 PF02984.14 Cyclin_C Domain 20 93 118 25.1 1.3e-05 1 CL0065 +TCONS_00003915 5 66 1 90 PF02984.14 Cyclin_C Domain 32 93 118 24.0 2.7e-05 1 CL0065 +TCONS_00003916 5 66 1 90 PF02984.14 Cyclin_C Domain 32 93 118 24.0 2.7e-05 1 CL0065 +TCONS_00003921 45 102 31 104 PF12796.2 Ank_2 Family 30 87 89 40.5 2.5e-10 1 CL0465 +TCONS_00003921 103 162 100 170 PF12796.2 Ank_2 Family 23 81 89 45.3 8e-12 1 CL0465 +TCONS_00003921 182 266 181 266 PF12796.2 Ank_2 Family 2 89 89 51.5 9.5e-14 1 CL0465 +TCONS_00003921 273 364 273 365 PF12796.2 Ank_2 Family 1 88 89 77.3 8.1e-22 1 CL0465 +TCONS_00003937 116 193 83 198 PF00892.15 EamA Family 27 104 126 22.5 8.8e-05 1 CL0184 +TCONS_00003939 116 212 83 215 PF00892.15 EamA Family 27 123 126 23.2 5.3e-05 1 CL0184 +TCONS_00003939 224 368 224 369 PF03151.11 TPT Family 1 152 153 115.0 2.2e-33 1 CL0184 +TCONS_00003940 116 212 83 215 PF00892.15 EamA Family 27 123 126 23.2 5.3e-05 1 CL0184 +TCONS_00003940 224 368 224 369 PF03151.11 TPT Family 1 152 153 115.0 2.2e-33 1 CL0184 +TCONS_00003941 116 212 83 215 PF00892.15 EamA Family 27 123 126 23.2 5.3e-05 1 CL0184 +TCONS_00003941 224 368 224 369 PF03151.11 TPT Family 1 152 153 115.0 2.2e-33 1 CL0184 +TCONS_00003942 116 212 103 215 PF00892.15 EamA Family 27 123 126 28.0 1.8e-06 1 CL0184 +TCONS_00003943 116 212 89 215 PF00892.15 EamA Family 27 123 126 26.4 5.4e-06 1 CL0184 +TCONS_00003959 116 193 83 198 PF00892.15 EamA Family 27 104 126 22.5 8.8e-05 1 CL0184 +TCONS_00003962 116 193 83 198 PF00892.15 EamA Family 27 104 126 22.8 6.9e-05 1 CL0184 +TCONS_00004002 60 95 60 95 PF14670.1 FXa_inhibition Domain 1 36 36 41.4 1.1e-10 1 CL0001 +TCONS_00004002 101 137 101 137 PF14670.1 FXa_inhibition Domain 1 36 36 34.7 1.3e-08 1 CL0001 +TCONS_00004002 180 219 180 219 PF07645.10 EGF_CA Domain 1 42 42 41.1 1.2e-10 1 CL0001 +TCONS_00004002 230 265 230 265 PF14670.1 FXa_inhibition Domain 1 36 36 36.2 4.6e-09 1 CL0001 +TCONS_00004002 311 346 311 346 PF14670.1 FXa_inhibition Domain 1 36 36 36.9 2.8e-09 1 CL0001 +TCONS_00004002 463 508 462 508 PF00053.19 Laminin_EGF Family 1 49 49 20.3 0.00038 1 CL0001 +TCONS_00004002 684 725 677 727 PF00053.19 Laminin_EGF Family 3 47 49 13.7 0.044 1 CL0001 +TCONS_00004002 768 812 768 814 PF00053.19 Laminin_EGF Family 1 49 49 15.6 0.011 1 CL0001 +TCONS_00004002 941 978 941 986 PF00053.19 Laminin_EGF Family 1 41 49 13.7 0.043 1 CL0001 +TCONS_00004003 165 200 165 200 PF14670.1 FXa_inhibition Domain 1 36 36 41.1 1.4e-10 1 CL0001 +TCONS_00004003 206 242 206 242 PF14670.1 FXa_inhibition Domain 1 36 36 34.4 1.7e-08 1 CL0001 +TCONS_00004003 285 324 285 324 PF07645.10 EGF_CA Domain 1 42 42 40.8 1.6e-10 1 CL0001 +TCONS_00004003 335 370 335 370 PF14670.1 FXa_inhibition Domain 1 36 36 35.8 6e-09 1 CL0001 +TCONS_00004003 416 451 416 451 PF14670.1 FXa_inhibition Domain 1 36 36 36.5 3.7e-09 1 CL0001 +TCONS_00004003 568 613 568 613 PF00053.19 Laminin_EGF Family 1 49 49 19.9 0.00049 1 CL0001 +TCONS_00004003 873 917 873 919 PF00053.19 Laminin_EGF Family 1 49 49 15.5 0.012 1 CL0001 +TCONS_00004003 1132 1169 1132 1174 PF00053.19 Laminin_EGF Family 1 41 49 19.0 0.00097 1 CL0001 +TCONS_00004003 1175 1213 1175 1221 PF00053.19 Laminin_EGF Family 1 41 49 15.5 0.011 1 CL0001 +TCONS_00004003 1348 1385 1347 1393 PF00053.19 Laminin_EGF Family 1 41 49 14.5 0.024 1 CL0001 +TCONS_00004004 225 249 223 251 PF00400.27 WD40 Repeat 13 37 39 26.2 4.9e-06 1 CL0186 +TCONS_00004005 225 249 223 251 PF00400.27 WD40 Repeat 13 37 39 26.3 4.6e-06 1 CL0186 +TCONS_00004033 18 98 17 100 PF03061.17 4HBT Domain 2 77 79 54.2 1.2e-14 1 CL0050 predicted_active_site[30] +TCONS_00004033 191 260 191 266 PF03061.17 4HBT Domain 1 71 79 62.1 3.8e-17 1 CL0050 predicted_active_site[204,204] +TCONS_00004034 39 119 38 121 PF03061.17 4HBT Domain 2 77 79 54.0 1.3e-14 1 CL0050 predicted_active_site[51] +TCONS_00004034 212 281 212 287 PF03061.17 4HBT Domain 1 71 79 62.0 4.2e-17 1 CL0050 predicted_active_site[225,225] +TCONS_00004035 69 149 68 151 PF03061.17 4HBT Domain 2 77 79 53.8 1.5e-14 1 CL0050 predicted_active_site[81] +TCONS_00004035 242 311 242 317 PF03061.17 4HBT Domain 1 71 79 61.8 4.8e-17 1 CL0050 predicted_active_site[255,255] +TCONS_00004036 127 196 127 203 PF03061.17 4HBT Domain 1 71 79 62.8 2.4e-17 1 CL0050 predicted_active_site[140,140] +TCONS_00004037 59 139 58 141 PF03061.17 4HBT Domain 2 77 79 53.9 1.4e-14 1 CL0050 predicted_active_site[71] +TCONS_00004037 232 301 232 307 PF03061.17 4HBT Domain 1 71 79 61.9 4.6e-17 1 CL0050 predicted_active_site[245,245] +TCONS_00004042 151 228 150 230 PF00531.17 Death Domain 2 81 83 62.9 1.7e-17 1 CL0041 +TCONS_00004044 109 186 108 188 PF00531.17 Death Domain 2 81 83 63.5 1.1e-17 1 CL0041 +TCONS_00004046 334 411 333 413 PF00531.17 Death Domain 2 81 83 61.4 4.9e-17 1 CL0041 +TCONS_00004049 343 420 342 422 PF00531.17 Death Domain 2 81 83 61.4 5.1e-17 1 CL0041 +TCONS_00004051 73 115 73 115 PF00020.13 TNFR_c6 Domain 1 39 39 21.4 0.00019 1 No_clan +TCONS_00004066 25 132 25 133 PF00651.26 BTB Domain 1 110 111 102.0 1.6e-29 1 CL0033 +TCONS_00004066 138 239 138 239 PF07707.10 BACK Domain 1 103 103 83.2 9.6e-24 1 CL0033 +TCONS_00004066 288 321 284 321 PF01344.20 Kelch_1 Repeat 14 47 47 25.3 7.9e-06 1 CL0186 +TCONS_00004066 327 368 326 369 PF01344.20 Kelch_1 Repeat 4 46 47 38.3 6.7e-10 1 CL0186 +TCONS_00004066 371 408 371 409 PF01344.20 Kelch_1 Repeat 1 46 47 21.6 0.00011 1 CL0186 +TCONS_00004067 4 41 4 42 PF01344.20 Kelch_1 Repeat 1 46 47 23.2 3.6e-05 1 CL0186 +TCONS_00004067 135 182 134 183 PF13964.1 Kelch_6 Repeat 2 49 50 38.0 1.1e-09 1 CL0186 +TCONS_00004068 25 132 25 133 PF00651.26 BTB Domain 1 110 111 101.8 1.9e-29 1 CL0033 +TCONS_00004068 138 239 138 239 PF07707.10 BACK Domain 1 103 103 82.9 1.1e-23 1 CL0033 +TCONS_00004068 288 321 284 321 PF01344.20 Kelch_1 Repeat 14 47 47 25.1 9e-06 1 CL0186 +TCONS_00004068 327 368 326 369 PF01344.20 Kelch_1 Repeat 4 46 47 38.1 7.6e-10 1 CL0186 +TCONS_00004068 371 408 371 409 PF01344.20 Kelch_1 Repeat 1 46 47 21.4 0.00013 1 CL0186 +TCONS_00004068 502 549 501 550 PF13964.1 Kelch_6 Repeat 2 49 50 36.1 4.4e-09 1 CL0186 +TCONS_00004102 18 236 13 274 PF00002.19 7tm_2 Family 8 211 243 53.1 2.2e-14 1 CL0192 +TCONS_00004103 18 177 13 225 PF00002.19 7tm_2 Family 8 162 243 48.6 5.3e-13 1 CL0192 +TCONS_00004104 18 177 13 208 PF00002.19 7tm_2 Family 8 162 243 50.8 1.1e-13 1 CL0192 +TCONS_00004110 169 257 169 258 PF00028.12 Cadherin Family 1 92 93 34.6 1.6e-08 1 CL0159 +TCONS_00004110 363 551 360 554 PF13385.1 Laminin_G_3 Domain 4 153 157 45.5 8.5e-12 1 CL0004 +TCONS_00004111 159 247 159 248 PF00028.12 Cadherin Family 1 92 93 34.7 1.6e-08 1 CL0159 +TCONS_00004111 353 541 350 544 PF13385.1 Laminin_G_3 Domain 4 153 157 45.5 8.4e-12 1 CL0004 +TCONS_00004112 169 257 169 258 PF00028.12 Cadherin Family 1 92 93 34.7 1.5e-08 1 CL0159 +TCONS_00004112 363 532 360 535 PF13385.1 Laminin_G_3 Domain 4 153 157 48.2 1.3e-12 1 CL0004 +TCONS_00004208 203 249 200 249 PF14604.1 SH3_9 Domain 5 49 49 34.1 1.4e-08 1 CL0010 +TCONS_00004209 79 125 76 125 PF14604.1 SH3_9 Domain 5 49 49 35.5 5e-09 1 CL0010 +TCONS_00004210 383 558 380 559 PF00621.15 RhoGEF Domain 4 179 180 118.3 3.2e-34 1 No_clan +TCONS_00004210 726 772 723 772 PF14604.1 SH3_9 Domain 5 49 49 32.1 5.9e-08 1 CL0010 +TCONS_00004224 180 243 180 243 PF06758.8 DUF1220 Domain 1 67 67 82.9 9.8e-24 1 No_clan +TCONS_00004224 451 514 451 514 PF06758.8 DUF1220 Domain 1 67 67 85.4 1.6e-24 1 No_clan +TCONS_00004224 722 782 722 784 PF06758.8 DUF1220 Domain 1 64 67 88.1 2.3e-25 1 No_clan +TCONS_00004224 808 870 808 871 PF06758.8 DUF1220 Domain 1 66 67 86.6 6.7e-25 1 No_clan +TCONS_00004224 880 946 880 946 PF06758.8 DUF1220 Domain 1 67 67 102.9 5.7e-30 1 No_clan +TCONS_00004224 955 1021 955 1021 PF06758.8 DUF1220 Domain 1 67 67 113.0 4e-33 1 No_clan +TCONS_00004224 1028 1094 1028 1094 PF06758.8 DUF1220 Domain 1 67 67 119.7 3.2e-35 1 No_clan +TCONS_00004225 180 240 180 242 PF06758.8 DUF1220 Domain 1 64 67 89.9 6.4e-26 1 No_clan +TCONS_00004225 266 328 266 329 PF06758.8 DUF1220 Domain 1 66 67 88.4 1.8e-25 1 No_clan +TCONS_00004225 338 404 338 404 PF06758.8 DUF1220 Domain 1 67 67 104.7 1.5e-30 1 No_clan +TCONS_00004226 180 240 180 242 PF06758.8 DUF1220 Domain 1 64 67 89.9 6.4e-26 1 No_clan +TCONS_00004226 266 328 266 329 PF06758.8 DUF1220 Domain 1 66 67 88.4 1.8e-25 1 No_clan +TCONS_00004226 338 404 338 404 PF06758.8 DUF1220 Domain 1 67 67 104.7 1.5e-30 1 No_clan +TCONS_00004227 180 243 180 243 PF06758.8 DUF1220 Domain 1 67 67 86.3 8.5e-25 1 No_clan +TCONS_00004227 451 511 451 513 PF06758.8 DUF1220 Domain 1 64 67 89.0 1.2e-25 1 No_clan +TCONS_00004227 537 599 537 600 PF06758.8 DUF1220 Domain 1 66 67 87.5 3.5e-25 1 No_clan +TCONS_00004227 609 674 609 674 PF06758.8 DUF1220 Domain 1 66 67 101.6 1.4e-29 1 No_clan +TCONS_00004240 67 282 62 282 PF00089.21 Trypsin Domain 9 220 220 156.0 1e-45 1 CL0124 +TCONS_00004241 30 108 19 110 PF00024.21 PAN_1 Domain 3 77 79 40.5 1.6e-10 1 CL0168 +TCONS_00004241 119 156 75 156 PF00051.13 Kringle Domain 43 79 79 46.3 3.3e-12 1 No_clan +TCONS_00004241 161 238 161 238 PF00051.13 Kringle Domain 1 79 79 99.4 8.6e-29 1 No_clan +TCONS_00004241 253 345 253 345 PF00051.13 Kringle Domain 1 79 79 31.3 1.5e-07 1 No_clan +TCONS_00004241 354 390 354 415 PF00051.13 Kringle Domain 1 37 79 36.6 3.5e-09 1 No_clan +TCONS_00004241 437 464 425 464 PF00051.13 Kringle Domain 53 79 79 26.6 4.5e-06 1 No_clan +TCONS_00004241 511 682 499 682 PF00089.21 Trypsin Domain 49 220 220 99.1 2.6e-28 1 CL0124 +TCONS_00004266 1 58 1 58 PF13764.1 E3_UbLigase_R4 Family 746 802 802 31.9 3.3e-08 1 No_clan +TCONS_00004267 1 104 1 107 PF13764.1 E3_UbLigase_R4 Family 72 173 802 130.0 7.1e-38 1 No_clan +TCONS_00004267 113 686 105 686 PF13764.1 E3_UbLigase_R4 Family 223 802 802 753.4 2.3e-226 1 No_clan +TCONS_00004269 58 98 58 99 PF13764.1 E3_UbLigase_R4 Family 1 41 802 76.2 1.3e-21 1 No_clan +TCONS_00004269 99 827 98 827 PF13764.1 E3_UbLigase_R4 Family 69 802 802 940.4 6.8e-283 1 No_clan +TCONS_00004270 78 874 78 874 PF13764.1 E3_UbLigase_R4 Family 1 802 802 1100.1 0 1 No_clan +TCONS_00004271 76 872 76 872 PF13764.1 E3_UbLigase_R4 Family 1 802 802 1100.1 0 1 No_clan +TCONS_00004311 1 78 1 78 PF15170.1 CaM-KIIN Family 1 79 79 157.6 5.4e-47 1 No_clan +TCONS_00004325 5 70 1 71 PF00538.14 Linker_histone Domain 9 75 77 44.2 1.5e-11 1 No_clan +TCONS_00004326 7 78 5 80 PF00538.14 Linker_histone Domain 3 75 77 58.0 7e-16 1 No_clan +TCONS_00004326 115 178 108 178 PF00538.14 Linker_histone Domain 13 77 77 38.2 1.1e-09 1 No_clan +TCONS_00004326 194 259 189 260 PF00538.14 Linker_histone Domain 9 75 77 42.7 4.4e-11 1 No_clan +TCONS_00004327 121 192 119 194 PF00538.14 Linker_histone Domain 3 75 77 57.5 1e-15 1 No_clan +TCONS_00004327 229 292 222 292 PF00538.14 Linker_histone Domain 13 77 77 37.7 1.6e-09 1 No_clan +TCONS_00004327 308 373 303 374 PF00538.14 Linker_histone Domain 9 75 77 42.2 6.3e-11 1 No_clan +TCONS_00004328 159 230 157 232 PF00538.14 Linker_histone Domain 3 75 77 57.4 1.1e-15 1 No_clan +TCONS_00004328 267 330 260 330 PF00538.14 Linker_histone Domain 13 77 77 37.5 1.8e-09 1 No_clan +TCONS_00004328 346 411 341 412 PF00538.14 Linker_histone Domain 9 75 77 42.0 7e-11 1 No_clan +TCONS_00004329 121 192 119 194 PF00538.14 Linker_histone Domain 3 75 77 57.5 1e-15 1 No_clan +TCONS_00004329 229 292 222 292 PF00538.14 Linker_histone Domain 13 77 77 37.7 1.6e-09 1 No_clan +TCONS_00004329 308 373 303 374 PF00538.14 Linker_histone Domain 9 75 77 42.2 6.3e-11 1 No_clan +TCONS_00004330 159 230 157 232 PF00538.14 Linker_histone Domain 3 75 77 57.4 1.1e-15 1 No_clan +TCONS_00004330 267 330 260 330 PF00538.14 Linker_histone Domain 13 77 77 37.5 1.8e-09 1 No_clan +TCONS_00004330 346 411 341 412 PF00538.14 Linker_histone Domain 9 75 77 42.0 7e-11 1 No_clan +TCONS_00004332 158 229 156 231 PF00538.14 Linker_histone Domain 3 75 77 58.4 5.4e-16 1 No_clan +TCONS_00004332 266 326 259 327 PF00538.14 Linker_histone Domain 13 74 77 35.7 6.7e-09 1 No_clan +TCONS_00004376 167 231 167 235 PF00076.17 RRM_1 Domain 1 64 70 50.8 9.4e-14 1 CL0221 +TCONS_00004376 248 312 248 318 PF00076.17 RRM_1 Domain 1 59 70 30.4 2.1e-07 1 CL0221 +TCONS_00004376 346 407 346 408 PF00076.17 RRM_1 Domain 1 69 70 56.1 2e-15 1 CL0221 +TCONS_00004377 167 231 167 235 PF00076.17 RRM_1 Domain 1 64 70 50.8 9.3e-14 1 CL0221 +TCONS_00004377 248 309 248 315 PF00076.17 RRM_1 Domain 1 59 70 35.8 4.3e-09 1 CL0221 +TCONS_00004377 343 404 343 405 PF00076.17 RRM_1 Domain 1 69 70 56.1 2e-15 1 CL0221 +TCONS_00004378 66 130 66 134 PF00076.17 RRM_1 Domain 1 64 70 51.1 7.3e-14 1 CL0221 +TCONS_00004378 147 208 147 214 PF00076.17 RRM_1 Domain 1 59 70 36.2 3.4e-09 1 CL0221 +TCONS_00004378 242 303 242 304 PF00076.17 RRM_1 Domain 1 69 70 56.5 1.6e-15 1 CL0221 +TCONS_00004379 66 130 66 134 PF00076.17 RRM_1 Domain 1 64 70 51.1 7.4e-14 1 CL0221 +TCONS_00004379 147 211 147 217 PF00076.17 RRM_1 Domain 1 59 70 30.8 1.6e-07 1 CL0221 +TCONS_00004379 245 306 245 307 PF00076.17 RRM_1 Domain 1 69 70 56.4 1.6e-15 1 CL0221 +TCONS_00004380 28 92 28 96 PF00076.17 RRM_1 Domain 1 64 70 51.3 6.6e-14 1 CL0221 +TCONS_00004380 109 170 109 176 PF00076.17 RRM_1 Domain 1 59 70 36.3 3e-09 1 CL0221 +TCONS_00004380 204 265 204 266 PF00076.17 RRM_1 Domain 1 69 70 56.6 1.4e-15 1 CL0221 +TCONS_00004381 129 193 129 197 PF00076.17 RRM_1 Domain 1 64 70 50.9 8.6e-14 1 CL0221 +TCONS_00004381 210 271 210 277 PF00076.17 RRM_1 Domain 1 59 70 35.9 3.9e-09 1 CL0221 +TCONS_00004381 305 366 305 367 PF00076.17 RRM_1 Domain 1 69 70 56.2 1.8e-15 1 CL0221 +TCONS_00004382 88 149 88 155 PF00076.17 RRM_1 Domain 1 59 70 36.4 2.8e-09 1 CL0221 +TCONS_00004382 183 244 183 245 PF00076.17 RRM_1 Domain 1 69 70 56.7 1.3e-15 1 CL0221 +TCONS_00004439 20 27 19 71 PF07004.7 SHIPPO-rpt Repeat 2 9 37 4.8 59 1 No_clan +TCONS_00004439 140 159 140 171 PF07004.7 SHIPPO-rpt Repeat 1 20 37 11.2 0.54 1 No_clan +TCONS_00004439 178 210 178 213 PF07004.7 SHIPPO-rpt Repeat 1 34 37 14.6 0.047 1 No_clan +TCONS_00004439 220 235 219 246 PF07004.7 SHIPPO-rpt Repeat 2 17 37 12.4 0.22 1 No_clan +TCONS_00004439 259 269 259 276 PF07004.7 SHIPPO-rpt Repeat 1 11 37 9.2 2.3 1 No_clan +TCONS_00004440 95 114 95 126 PF07004.7 SHIPPO-rpt Repeat 1 20 37 11.5 0.43 1 No_clan +TCONS_00004440 133 165 133 168 PF07004.7 SHIPPO-rpt Repeat 1 34 37 14.9 0.036 1 No_clan +TCONS_00004440 175 191 174 202 PF07004.7 SHIPPO-rpt Repeat 2 18 37 12.8 0.17 1 No_clan +TCONS_00004440 214 224 214 231 PF07004.7 SHIPPO-rpt Repeat 1 11 37 9.5 1.8 1 No_clan +TCONS_00004441 67 74 66 93 PF07004.7 SHIPPO-rpt Repeat 2 9 37 4.3 83 1 No_clan +TCONS_00004441 187 206 187 218 PF07004.7 SHIPPO-rpt Repeat 1 20 37 10.9 0.66 1 No_clan +TCONS_00004441 225 257 225 260 PF07004.7 SHIPPO-rpt Repeat 1 34 37 14.3 0.058 1 No_clan +TCONS_00004441 267 282 266 293 PF07004.7 SHIPPO-rpt Repeat 2 17 37 12.2 0.27 1 No_clan +TCONS_00004441 306 316 306 323 PF07004.7 SHIPPO-rpt Repeat 1 11 37 9.0 2.7 1 No_clan +TCONS_00004442 67 74 66 93 PF07004.7 SHIPPO-rpt Repeat 2 9 37 4.3 83 1 No_clan +TCONS_00004442 187 206 187 218 PF07004.7 SHIPPO-rpt Repeat 1 20 37 10.9 0.66 1 No_clan +TCONS_00004442 225 257 225 260 PF07004.7 SHIPPO-rpt Repeat 1 34 37 14.3 0.058 1 No_clan +TCONS_00004442 267 282 266 293 PF07004.7 SHIPPO-rpt Repeat 2 17 37 12.2 0.27 1 No_clan +TCONS_00004442 306 316 306 323 PF07004.7 SHIPPO-rpt Repeat 1 11 37 9.0 2.7 1 No_clan +TCONS_00004443 15 25 15 52 PF07004.7 SHIPPO-rpt Repeat 1 11 37 4.0 1.1e+02 1 No_clan +TCONS_00004443 55 74 55 86 PF07004.7 SHIPPO-rpt Repeat 1 20 37 13.1 0.13 1 No_clan +TCONS_00004443 93 105 93 113 PF07004.7 SHIPPO-rpt Repeat 1 13 37 13.6 0.094 1 No_clan
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/salmon_cond1_rep1.sf Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,1093 @@ +Name Length EffectiveLength TPM NumReads +TCONS_00000001 1652 1652 11.1815 11.6729 +TCONS_00000002 1488 1488 0 0 +TCONS_00000003 1595 1595 0 0 +TCONS_00000006 78 78 28475.5 0.324245 +TCONS_00000007 2750 2750 32.5198 59.1913 +TCONS_00000008 4369 4369 10.0237 29.7173 +TCONS_00000009 4272 4272 15.3493 44.4535 +TCONS_00000010 937 937 0 0 +TCONS_00000012 1584 1584 47709 47512.3 +TCONS_00000013 694 694 2748.13 1007.75 +TCONS_00000015 1023 1023 16380.9 9816.85 +TCONS_00000016 510 510 0 0 +TCONS_00000017 854 854 0 0 +TCONS_00000018 701 701 57.6706 21.4335 +TCONS_00000019 517 517 48.5659 11.7325 +TCONS_00000020 1543 1543 196.837 190.32 +TCONS_00000021 2682 2682 59.2833 105.056 +TCONS_00000022 3043 3043 0.47982 0.972736 +TCONS_00000023 490 490 4.37202 0.972736 +TCONS_00000024 2554 2554 0 0 +TCONS_00000025 2121 2121 36.5397 50.2604 +TCONS_00000026 2560 2560 144.607 243.785 +TCONS_00000027 955 955 51.7022 28.4991 +TCONS_00000028 2003 2003 112.974 145.972 +TCONS_00000029 1149 1149 56.5546 38.9299 +TCONS_00000030 2398 2398 11.0247 17.3234 +TCONS_00000031 2554 2554 16.5029 27.7514 +TCONS_00000032 2293 2293 45.2628 67.7627 +TCONS_00000033 662 662 2821.38 970.791 +TCONS_00000034 7319 7319 1948.03 9837.85 +TCONS_00000035 673 673 9.4226 3.31544 +TCONS_00000036 971 971 106.506 59.9124 +TCONS_00000037 1616 1616 0 0 +TCONS_00000041 2259 2259 0 0 +TCONS_00000042 2278 2278 0 0 +TCONS_00000043 2111 2111 0 0 +TCONS_00000044 2790 2790 1006.18 1859.87 +TCONS_00000045 3054 3054 8.45822 17.2131 +TCONS_00000046 2960 2960 21.2277 41.7893 +TCONS_00000047 2590 2590 12.0013 20.4869 +TCONS_00000048 2684 2684 4.21879 7.48206 +TCONS_00000049 2530 2530 11.4481 19.0569 +TCONS_00000050 1239 1239 847.508 637.313 +TCONS_00000051 1181 1181 139.312 99.0486 +TCONS_00000052 1932 1932 14.4788 17.981 +TCONS_00000053 2192 2192 845.357 1205.22 +TCONS_00000054 2558 2558 2.88743 4.86368 +TCONS_00000055 1747 1747 272.665 302.96 +TCONS_00000056 1594 1594 55.4717 55.6352 +TCONS_00000057 1741 1741 175.51 194.266 +TCONS_00000058 491 491 0 0 +TCONS_00000059 2141 2141 38.7529 53.8526 +TCONS_00000060 2536 2536 309.875 517.144 +TCONS_00000061 3859 3859 18.4899 48.1504 +TCONS_00000062 2432 2432 462.516 737.879 +TCONS_00000063 1939 1939 32.3298 40.3101 +TCONS_00000064 2667 2667 192.737 339.504 +TCONS_00000065 1170 1170 406.751 286.03 +TCONS_00000066 2611 2611 41.1192 70.8031 +TCONS_00000067 2467 2467 1092.68 1770.26 +TCONS_00000068 2329 2329 1496.94 2279.16 +TCONS_00000069 2616 2616 12.7511 22.0012 +TCONS_00000070 1048 1048 0 0 +TCONS_00000071 3243 3243 23.23 50.3786 +TCONS_00000072 3201 3201 230.473 492.98 +TCONS_00000073 3231 3231 0 0 +TCONS_00000074 3026 3026 71.9881 145.076 +TCONS_00000076 2930 2930 39.4169 76.761 +TCONS_00000077 2890 2890 14.8124 28.427 +TCONS_00000078 3311 3311 50.6086 112.187 +TCONS_00000079 2590 2590 35.4331 60.4861 +TCONS_00000080 2308 2308 32.0146 48.2684 +TCONS_00000081 585 585 0 0 +TCONS_00000082 1239 1239 2.05912 1.54843 +TCONS_00000083 1306 1306 0 0 +TCONS_00000084 905 905 36.2798 18.7156 +TCONS_00000085 850 850 0.00268498 0.0012807 +TCONS_00000086 906 906 68.4177 35.3429 +TCONS_00000087 848 848 0 0 +TCONS_00000088 1808 1808 45.8269 52.8948 +TCONS_00000089 921 921 18.4517 9.72736 +TCONS_00000090 1101 1101 0 0 +TCONS_00000091 1925 1925 0.786404 0.972736 +TCONS_00000092 2324 2324 0 0 +TCONS_00000093 2112 2112 26.7569 36.634 +TCONS_00000094 2032 2032 0 0 +TCONS_00000095 2009 2009 4.54047 5.88592 +TCONS_00000096 1745 1745 10.9251 12.1235 +TCONS_00000097 1212 1212 0 0 +TCONS_00000098 1849 1849 0 0 +TCONS_00000099 1859 1859 0 0 +TCONS_00000100 2089 2089 6.18632 8.36934 +TCONS_00000101 1943 1943 86.4024 107.974 +TCONS_00000102 5706 5706 1751.24 6847.09 +TCONS_00000103 3093 3093 3557.39 7337.62 +TCONS_00000104 3203 3203 170.625 365.207 +TCONS_00000105 4834 4834 1.54004 5.0719900000000004 +TCONS_00000106 3951 3951 0 0 +TCONS_00000107 3939 3939 0.667472 1.77595 +TCONS_00000108 4854 4854 0 0 +TCONS_00000109 5564 5564 2.54328 9.68858 +TCONS_00000110 2241 2241 0 0 +TCONS_00000111 722 722 77.1879 29.8331 +TCONS_00000112 1671 1671 39.8848 42.1734 +TCONS_00000113 4460 4460 41.4281 125.487 +TCONS_00000114 1704 1704 511.88 553.193 +TCONS_00000115 1561 1561 17.5428 17.1852 +TCONS_00000116 2709 2709 681.085 1219.95 +TCONS_00000117 2763 2763 9.1221 16.6875 +TCONS_00000118 2677 2677 609.452 1077.85 +TCONS_00000119 2697 2697 0 0 +TCONS_00000120 2601 2601 34.2029 58.6521 +TCONS_00000121 2598 2598 0 0 +TCONS_00000122 2571 2571 98.8097 167.346 +TCONS_00000124 8659 8659 0 0 +TCONS_00000125 8716 8716 5.56099 33.5758 +TCONS_00000126 8662 8662 0 0 +TCONS_00000127 8719 8719 1.36623 8.25186 +TCONS_00000128 8720 8720 0 0 +TCONS_00000129 2902 2902 1.98171 3.81998 +TCONS_00000130 2209 2209 6.1018 8.77263 +TCONS_00000131 2217 2217 0.0366983 0.052969 +TCONS_00000132 1403 1403 0 0 +TCONS_00000133 1817 1817 0 0 +TCONS_00000134 2425 2425 2758.18 4386.64 +TCONS_00000135 2248 2248 26.1657 38.3401 +TCONS_00000136 1904 1904 2.91602 3.56366 +TCONS_00000137 2845 2845 5.84271 11.0271 +TCONS_00000138 1585 1585 0 0 +TCONS_00000140 2728 2728 0 0 +TCONS_00000141 2673 2673 0 0 +TCONS_00000142 1091 1091 0 0 +TCONS_00000144 1894 1894 2.50409e-4 3.04254e-4 +TCONS_00000145 2174 2174 0.688434 0.972736 +TCONS_00000146 545 545 52.1031 13.6183 +TCONS_00000147 760 760 0 0 +TCONS_00000149 956 956 0 0 +TCONS_00000151 3027 3027 115.803 233.457 +TCONS_00000152 3077 3077 0 0 +TCONS_00000154 3151 3151 0 0 +TCONS_00000156 3196 3196 0 0 +TCONS_00000157 3099 3099 0 0 +TCONS_00000158 1950 1950 2.0418 2.56167 +TCONS_00000159 1279 1279 0.456947 0.356538 +TCONS_00000160 1055 1055 1.56411 0.972736 +TCONS_00000163 2070 2070 1.70363 2.28192 +TCONS_00000164 2922 2922 0.828644 1.60902 +TCONS_00000165 4625 4625 0.309231 0.972736 +TCONS_00000166 3128 3128 50.967 106.388 +TCONS_00000167 2388 2388 2.23347 3.49371 +TCONS_00000168 3171 3171 0 0 +TCONS_00000169 3129 3129 35.8884 74.9384 +TCONS_00000170 3557 3557 0 0 +TCONS_00000171 3426 3426 0 0 +TCONS_00000172 3137 3137 0 0 +TCONS_00000173 1293 1293 2.66814 2.10826 +TCONS_00000174 3963 3963 29.1429 78.0352 +TCONS_00000175 1412 1412 8.96186 7.83521 +TCONS_00000176 1421 1421 8.35107 7.35434 +TCONS_00000177 1248 1248 1.28271 0.972736 +TCONS_00000178 687 687 0 0 +TCONS_00000179 3530 3530 0.410165 0.972736 +TCONS_00000180 1883 1883 0 0 +TCONS_00000181 2698 2698 1.98972e-5 3.54847e-5 +TCONS_00000182 1936 1936 0 0 +TCONS_00000183 1293 1293 0 0 +TCONS_00000184 2364 2364 1.88599 2.91817 +TCONS_00000185 2257 2257 39.252 57.765 +TCONS_00000186 2337 2337 43.6863 66.7613 +TCONS_00000187 2265 2265 139.003 205.349 +TCONS_00000188 2483 2483 37.4921 61.165 +TCONS_00000189 3669 3669 674.265 1665.32 +TCONS_00000190 1363 1363 387.393 325.273 +TCONS_00000191 1270 1270 123.558 95.6214 +TCONS_00000192 2094 2094 43.6382 59.1915 +TCONS_00000193 722 722 2772.12 1071.42 +TCONS_00000194 8441 8441 1.96532 11.484 +TCONS_00000195 5417 5417 0.00296778 0.0109973 +TCONS_00000196 5158 5158 0 0 +TCONS_00000197 3979 3979 1.65084 4.43907 +TCONS_00000198 2204 2204 6294.2 9026.99 +TCONS_00000199 1523 1523 5.9201 5.6404 +TCONS_00000200 3524 3524 19.7324 46.713 +TCONS_00000201 3414 3414 0 0 +TCONS_00000202 6251 6251 57.3894 246.495 +TCONS_00000203 6278 6278 131.625 567.859 +TCONS_00000204 6336 6336 0 0 +TCONS_00000205 1476 1476 20.87 19.1906 +TCONS_00000206 902 902 14436.2 7416.55 +TCONS_00000207 842 842 301.681 142.192 +TCONS_00000208 960 960 7370.16 4088.6 +TCONS_00000209 2323 2323 5.65026 8.57881 +TCONS_00000210 2400 2400 115.224 181.218 +TCONS_00000211 1756 1756 75.4735 84.3394 +TCONS_00000214 9113 9113 997.925 6305.28 +TCONS_00000215 3115 3115 295.375 613.847 +TCONS_00000216 2961 2961 676.183 1331.63 +TCONS_00000217 1460 1460 333.697 303.07 +TCONS_00000218 1536 1536 15.6092 15.0152 +TCONS_00000219 3848 3848 356.342 925.199 +TCONS_00000220 3735 3735 83.0566 209.011 +TCONS_00000221 5410 5410 39.6231 146.63 +TCONS_00000222 5336 5336 110.918 404.661 +TCONS_00000223 5482 5482 16.1633 60.6367 +TCONS_00000224 3780 3780 285.907 728.579 +TCONS_00000225 654 654 20.1199 6.80915 +TCONS_00000227 5515 5515 1037.1 3914.87 +TCONS_00000228 5902 5902 40.9313 165.707 +TCONS_00000229 5548 5548 0 0 +TCONS_00000230 5400 5400 0 0 +TCONS_00000231 1035 1035 53.6395 32.6005 +TCONS_00000232 2038 2038 264.109 347.786 +TCONS_00000233 1574 1574 0 0 +TCONS_00000234 7662 7662 711.164 3763.93 +TCONS_00000235 10579 10579 135.792 998.718 +TCONS_00000236 10667 10667 0 0 +TCONS_00000237 8667 8667 0 0 +TCONS_00000240 8703 8703 24.182 145.782 +TCONS_00000241 1936 1936 16743.9 20841.5 +TCONS_00000243 1870 1870 623.48 746.967 +TCONS_00000244 2051 2051 5.47918 7.26548 +TCONS_00000245 1235 1235 156.946 117.578 +TCONS_00000246 1467 1467 24.1952 22.0942 +TCONS_00000247 1400 1400 4.79862 4.15465 +TCONS_00000248 1427 1427 548.165 485.065 +TCONS_00000249 1184 1184 7.47801 5.3326 +TCONS_00000250 309 309 503.733 47.6307 +TCONS_00000251 1132 1132 23.992 16.2268 +TCONS_00000252 1125 1125 2.3572 1.58261 +TCONS_00000253 1924 1924 1215.73 1502.92 +TCONS_00000256 1795 1795 30.3095 34.7056 +TCONS_00000258 4216 4216 3079.08 8795.48 +TCONS_00000259 4052 4052 0 0 +TCONS_00000260 2237 2237 10.6784 15.5638 +TCONS_00000261 3653 3653 397.637 977.6 +TCONS_00000262 759 759 0 0 +TCONS_00000263 5213 5213 1.09247 3.89066 +TCONS_00000264 2837 2837 1.51083e-4 2.84288e-4 +TCONS_00000265 2933 2933 12.8062 24.9661 +TCONS_00000266 781 781 32.5956 13.9577 +TCONS_00000267 3319 3319 17.4808 38.8494 +TCONS_00000268 2947 2947 109.812 215.169 +TCONS_00000269 2822 2822 215.408 403.042 +TCONS_00000270 2918 2918 12.2956 23.8402 +TCONS_00000271 2688 2688 0 0 +TCONS_00000272 1547 1547 341.057 330.73 +TCONS_00000273 1773 1773 20.6692 23.3457 +TCONS_00000274 3728 3728 10.8446 27.2366 +TCONS_00000275 1279 1279 76.6423 59.8011 +TCONS_00000276 1258 1258 18.4988 14.1593 +TCONS_00000277 1182 1182 1240.78 883.051 +TCONS_00000278 1161 1161 353.763 246.517 +TCONS_00000279 1126 1126 76.3288 51.3007 +TCONS_00000280 726 726 0 0 +TCONS_00000281 2663 2663 0 0 +TCONS_00000282 1738 1738 3.88872 4.29604 +TCONS_00000283 1202 1202 0 0 +TCONS_00000284 1077 1077 19.6523 12.5276 +TCONS_00000285 1041 1041 4.084 2.49946 +TCONS_00000286 1194 1194 50.5781 36.425 +TCONS_00000287 5643 5643 428.033 1654.49 +TCONS_00000288 5627 5627 0 0 +TCONS_00000290 837 837 19.2261 8.99394 +TCONS_00000291 957 957 0 0 +TCONS_00000292 660 660 0 0 +TCONS_00000293 467 467 0 0 +TCONS_00000295 934 934 0 0 +TCONS_00000296 3003 3003 6858.82 13710.9 +TCONS_00000297 3144 3144 89.3714 187.563 +TCONS_00000298 4676 4676 2861.06 9103.1 +TCONS_00000299 4531 4531 213.79 658.305 +TCONS_00000300 1588 1588 680.824 679.943 +TCONS_00000301 3684 3684 8.99283 22.3062 +TCONS_00000302 3593 3593 9.54117e-4 0.00230525 +TCONS_00000303 2359 2359 0 0 +TCONS_00000304 2151 2151 7.01063 9.79182 +TCONS_00000305 3674 3674 906.189 2241.34 +TCONS_00000306 3574 3574 103.982 249.836 +TCONS_00000307 3561 3561 0 0 +TCONS_00000308 16326 16326 0 0 +TCONS_00000309 16251 16251 112.839 1282.36 +TCONS_00000310 13946 13946 99.6383 969.979 +TCONS_00000311 4062 4062 0 0 +TCONS_00000312 5671 5671 98.556 382.902 +TCONS_00000313 4219 4219 5.40974 15.4646 +TCONS_00000314 152 152 0 0 +TCONS_00000315 1574 1574 0 0 +TCONS_00000316 3832 3832 0 0 +TCONS_00000317 4049 4049 0 0 +TCONS_00000318 897 897 0 0 +TCONS_00000319 1018 1018 0 0 +TCONS_00000320 1783 1783 0 0 +TCONS_00000321 1606 1606 0 0 +TCONS_00000325 1855 1855 0 0 +TCONS_00000326 1863 1863 0 0 +TCONS_00000330 1863 1863 0 0 +TCONS_00000331 1557 1557 0 0 +TCONS_00000333 2804 2804 58.3333 108.403 +TCONS_00000334 2810 2810 91.6859 170.772 +TCONS_00000335 2699 2699 0 0 +TCONS_00000339 2700 2700 21.1734 37.7906 +TCONS_00000340 7456 7456 5.62555 28.9547 +TCONS_00000341 7955 7955 20.2399 111.315 +TCONS_00000342 2129 2129 0 0 +TCONS_00000343 2020 2020 2.65997 3.46887 +TCONS_00000344 6272 6272 293.311 1264.17 +TCONS_00000345 2301 2301 13.1163 19.7105 +TCONS_00000347 4052 4052 1.95926 5.36954 +TCONS_00000348 3905 3905 19.0785 50.3037 +TCONS_00000349 3833 3833 0 0 +TCONS_00000350 6021 6021 0 0 +TCONS_00000351 3842 3842 22.3299 57.8822 +TCONS_00000352 3643 3643 24.1793 59.2744 +TCONS_00000353 3653 3653 152.275 374.372 +TCONS_00000354 3393 3393 97.0643 220.794 +TCONS_00000355 4528 4528 6.32212 19.4538 +TCONS_00000356 2015 2015 0.0089552 0.0116468 +TCONS_00000357 1942 1942 43.713 54.5958 +TCONS_00000358 1879 1879 50.7576 61.1336 +TCONS_00000359 1911 1911 205.385 252.016 +TCONS_00000360 1984 1984 259.367 331.64 +TCONS_00000361 5090 5090 2.42645 8.43043 +TCONS_00000362 3506 3506 0 0 +TCONS_00000365 1378 1378 1.14406 0.972737 +TCONS_00000367 2419 2419 2524.19 4003.78 +TCONS_00000368 899 899 2.76276e-5 1.4135e-5 +TCONS_00000369 753 753 2.3817 0.972722 +TCONS_00000371 922 922 0 0 +TCONS_00000372 2314 2314 10.1386 15.329 +TCONS_00000373 6023 6023 222.047 917.931 +TCONS_00000374 5838 5838 78.4341 313.986 +TCONS_00000375 2927 2927 2.39832 4.66544 +TCONS_00000376 1462 1462 1.7478 1.58986 +TCONS_00000377 1759 1759 229.817 257.301 +TCONS_00000379 1853 1853 277.091 328.642 +TCONS_00000380 2770 2770 184.015 337.539 +TCONS_00000381 4120 4120 2359.58 6580.07 +TCONS_00000382 3070 3070 11.3519 23.2304 +TCONS_00000383 1741 1741 0.982944 1.08799 +TCONS_00000384 1518 1518 0 0 +TCONS_00000385 3493 3493 0 0 +TCONS_00000386 3349 3349 1353.79 3037.38 +TCONS_00000388 1524 1524 8.21278 7.83056 +TCONS_00000389 2792 2792 158.774 293.709 +TCONS_00000390 12227 12227 159.562 1359.43 +TCONS_00000391 11900 11900 176.796 1465.4 +TCONS_00000393 3059 3059 0 0 +TCONS_00000395 2532 2532 0 0 +TCONS_00000396 2406 2406 0.616835 0.972735 +TCONS_00000397 2535 2535 0 0 +TCONS_00000398 903 903 0 0 +TCONS_00000399 1097 1097 0 0 +TCONS_00000401 2128 2128 2.11396 2.91821 +TCONS_00000402 1498 1498 0 0 +TCONS_00000403 3583 3583 2053.21 4946.26 +TCONS_00000404 3580 3580 2196.62 5287.08 +TCONS_00000405 3633 3633 1355.74 3313.96 +TCONS_00000406 1342 1342 0 0 +TCONS_00000407 2079 2079 3268.72 4399.08 +TCONS_00000408 2003 2003 93.8204 121.224 +TCONS_00000409 2001 2001 0 0 +TCONS_00000410 2415 2415 2.308 3.65435 +TCONS_00000411 1397 1397 0 0 +TCONS_00000412 1586 1586 0 0 +TCONS_00000413 2635 2635 5.37404 9.34474 +TCONS_00000414 1403 1403 5.41195 4.69715 +TCONS_00000415 1748 1748 1.37329 1.52684 +TCONS_00000416 2736 2736 0 0 +TCONS_00000417 2413 2413 4.05013 6.40701 +TCONS_00000418 2026 2026 0.303579 0.397185 +TCONS_00000419 1668 1668 0 0 +TCONS_00000420 6656 6656 82.3142 377.118 +TCONS_00000421 2614 2614 2.73363 4.71283 +TCONS_00000422 6137 6137 19.5749 82.4996 +TCONS_00000423 2424 2424 45.4774 72.2956 +TCONS_00000424 3847 3847 0 0 +TCONS_00000425 2600 2600 0 0 +TCONS_00000427 2455 2455 0 0 +TCONS_00000428 2086 2086 0 0 +TCONS_00000429 3186 3186 0 0 +TCONS_00000430 1551 1551 0 0 +TCONS_00000431 2265 2265 0 0 +TCONS_00000432 2347 2347 0 0 +TCONS_00000433 3667 3667 4.10342 10.129 +TCONS_00000434 4493 4493 26.4814 80.8306 +TCONS_00000435 4260 4260 154.45 445.995 +TCONS_00000436 4245 4245 90.7217 261.009 +TCONS_00000437 2011 2011 0 0 +TCONS_00000438 4599 4599 0 0 +TCONS_00000439 3481 3481 0 0 +TCONS_00000440 3691 3691 239.428 595.072 +TCONS_00000441 3075 3075 0 0 +TCONS_00000442 2261 2261 7.53435 11.1092 +TCONS_00000443 1859 1859 5.72061 6.80915 +TCONS_00000444 1943 1943 0 0 +TCONS_00000445 1884 1884 0 0 +TCONS_00000446 1111 1111 0 0 +TCONS_00000447 5055 5055 0 0 +TCONS_00000448 4093 4093 0 0 +TCONS_00000449 2259 2259 0 0 +TCONS_00000450 2253 2253 0 0 +TCONS_00000451 6052 6052 0 0 +TCONS_00000452 2272 2272 2059.34 3052.45 +TCONS_00000453 1884 1884 397.53 480.199 +TCONS_00000454 1642 1642 16.0314 16.6226 +TCONS_00000455 2254 2254 71.9504 105.733 +TCONS_00000456 1611 1611 18.6389 18.9178 +TCONS_00000457 1740 1740 145.194 160.608 +TCONS_00000458 2298 2298 118.603 177.979 +TCONS_00000459 2589 2589 1986.31 3389.33 +TCONS_00000460 2025 2025 10771 14084.5 +TCONS_00000461 2054 2054 0 0 +TCONS_00000462 2088 2088 17.8748 24.1698 +TCONS_00000463 2021 2021 3632.29 4739.44 +TCONS_00000464 1983 1983 0 0 +TCONS_00000465 6506 6506 77.8118 348.24 +TCONS_00000466 2793 2793 4.12838 7.63982 +TCONS_00000467 2581 2581 0 0 +TCONS_00000468 1893 1893 247.643 300.718 +TCONS_00000469 2719 2719 0 0 +TCONS_00000470 2971 2971 0.984354 1.94547 +TCONS_00000471 3743 3743 0 0 +TCONS_00000472 4475 4475 0 0 +TCONS_00000473 4419 4419 0 0 +TCONS_00000474 2908 2908 0 0 +TCONS_00000476 2581 2581 2.28786 3.89094 +TCONS_00000477 957 957 160.178 88.519 +TCONS_00000478 1078 1078 0 0 +TCONS_00000479 787 787 0 0 +TCONS_00000480 2659 2659 1913.64 3360.04 +TCONS_00000481 1658 1658 532.486 558.146 +TCONS_00000482 2437 2437 0.608381 0.972736 +TCONS_00000483 105 105 3343.43 1.4591 +TCONS_00000484 3765 3765 0 0 +TCONS_00000485 4294 4294 294.884 858.604 +TCONS_00000486 3729 3729 15.4403 38.7898 +TCONS_00000487 3555 3555 20.1681 48.1865 +TCONS_00000488 2595 2595 11.3727 19.4541 +TCONS_00000489 2554 2554 0 0 +TCONS_00000490 2430 2430 4.18676e-4 6.67346e-4 +TCONS_00000491 2314 2314 0 0 +TCONS_00000492 2557 2557 0 0 +TCONS_00000493 4012 4012 8.57636 23.2618 +TCONS_00000494 987 987 60.5947 34.7715 +TCONS_00000495 1001 1001 0 0 +TCONS_00000498 1100 1100 0 0 +TCONS_00000499 1036 1036 441.225 268.475 +TCONS_00000501 1512 1512 59.3426 56.0775 +TCONS_00000502 2293 2293 703.854 1053.73 +TCONS_00000503 2167 2167 0 0 +TCONS_00000504 2094 2094 9688.65 13141.8 +TCONS_00000505 2302 2302 0 0 +TCONS_00000506 2343 2343 55.1779 84.5569 +TCONS_00000507 8992 8992 9.50577 59.248 +TCONS_00000508 8704 8704 174.799 1053.91 +TCONS_00000509 8368 8368 13.2159 76.5429 +TCONS_00000510 2160 2160 6.90339 9.68596 +TCONS_00000511 1844 1844 0 0 +TCONS_00000512 4996 4996 0 0 +TCONS_00000519 4032 4032 78.441 213.866 +TCONS_00000520 4868 4868 136.277 452.094 +TCONS_00000521 4865 4865 1336.28 4430.21 +TCONS_00000522 4629 4629 0 0 +TCONS_00000523 3565 3565 23.9499 57.3914 +TCONS_00000524 3035 3035 1696.69 3430.1 +TCONS_00000525 3107 3107 574.837 1191.37 +TCONS_00000526 887 887 34.2893 17.2525 +TCONS_00000527 2815 2815 35.2688 65.8155 +TCONS_00000528 2178 2178 0 0 +TCONS_00000529 1779 1779 0 0 +TCONS_00000530 1625 1625 0 0 +TCONS_00000531 607 607 54995.8 16784.9 +TCONS_00000532 604 604 9460.49 2867.3 +TCONS_00000533 594 594 44790.6 13258.6 +TCONS_00000534 1975 1975 100.815 128.266 +TCONS_00000535 4942 4942 1291.62 4352.47 +TCONS_00000536 1620 1620 1737.9 1774.97 +TCONS_00000537 1576 1576 129.949 128.679 +TCONS_00000538 1686 1686 0 0 +TCONS_00000539 1728 1728 185.727 203.868 +TCONS_00000540 1622 1622 292.451 299.102 +TCONS_00000541 1590 1590 1129.15 1129.28 +TCONS_00000542 2412 2412 1827.09 2889.03 +TCONS_00000544 2799 2799 0 0 +TCONS_00000545 2699 2699 7.04501e-5 1.25691e-4 +TCONS_00000546 2512 2512 0.588778 0.97261 +TCONS_00000547 1814 1814 0 0 +TCONS_00000548 1732 1732 170.681 187.835 +TCONS_00000549 5425 5425 981.947 3644.21 +TCONS_00000550 5535 5535 30.7929 116.674 +TCONS_00000551 2736 2736 5.69808 10.315 +TCONS_00000552 1697 1697 193.325 207.971 +TCONS_00000553 1413 1413 43.1353 37.743 +TCONS_00000554 1269 1269 40.7521 31.5092 +TCONS_00000555 1271 1271 0.00821765 0.00636545 +TCONS_00000556 1097 1097 0 0 +TCONS_00000557 3953 3953 0 0 +TCONS_00000558 3933 3933 822.276 2184.35 +TCONS_00000559 3969 3969 657.837 1764.26 +TCONS_00000560 2393 2393 25.7104 40.3084 +TCONS_00000561 2510 2510 168.495 278.101 +TCONS_00000562 1489 1489 33.9183 31.5005 +TCONS_00003803 842 842 721.461 340.048 +TCONS_00003804 2411 2411 0 0 +TCONS_00003807 1745 1745 0 0 +TCONS_00003808 1745 1745 6.75253 7.49324 +TCONS_00003809 1768 1768 253.034 284.904 +TCONS_00003810 1636 1636 35.0432 36.1869 +TCONS_00003812 3181 3181 58.2453 123.763 +TCONS_00003813 3517 3517 0 0 +TCONS_00003814 1189 1189 0 0 +TCONS_00003816 1134 1134 0 0 +TCONS_00003817 1097 1097 0 0 +TCONS_00003818 717 717 244.282 93.5513 +TCONS_00003819 1577 1577 81.853 81.1105 +TCONS_00003820 1148 1148 15.8846 10.9231 +TCONS_00003821 1022 1022 373.474 223.554 +TCONS_00003822 806 806 51.8984 23.1406 +TCONS_00003824 1129 1129 8.65652 5.83642 +TCONS_00003825 2373 2373 10.3306 16.0501 +TCONS_00003826 1390 1390 16.0474 13.7804 +TCONS_00003827 937 937 0 0 +TCONS_00003828 4272 4272 0.552601 1.6004 +TCONS_00003829 4295 4295 33.8281 98.5202 +TCONS_00003830 4812 4812 17.4239 57.1131 +TCONS_00003831 78 78 28475.5 0.324245 +TCONS_00003833 78 78 28475.5 0.324245 +TCONS_00003835 683 683 27.5783 9.89865 +TCONS_00003836 1317 1317 38.5659 31.1276 +TCONS_00003837 1316 1316 33.7748 27.2366 +TCONS_00003838 1704 1704 4.50045 4.86368 +TCONS_00003839 496 496 8.58047 1.94547 +TCONS_00003840 436 436 0 0 +TCONS_00003841 4282 4282 78.796 228.76 +TCONS_00003842 2799 2799 958.588 1777.99 +TCONS_00003843 2814 2814 1826.67 3407.48 +TCONS_00003844 896 896 77.0351 39.2499 +TCONS_00003845 1214 1214 38.416 28.2093 +TCONS_00003846 3040 3040 0 0 +TCONS_00003847 962 962 10.4941 5.83642 +TCONS_00003848 1040 1040 0 0 +TCONS_00003849 1870 1870 0 0 +TCONS_00003850 1750 1750 31.0945 34.6153 +TCONS_00003851 1741 1741 47.7952 52.9029 +TCONS_00003852 2741 2741 0 0 +TCONS_00003853 1979 1979 1.09595 1.39747 +TCONS_00003854 2373 2373 0 0 +TCONS_00003855 2276 2276 38.0568 56.5172 +TCONS_00003856 2704 2704 21.1042 37.7268 +TCONS_00003857 2104 2104 92.5354 126.17 +TCONS_00003858 3532 3532 0 0 +TCONS_00003859 1062 1062 0 0 +TCONS_00003860 1178 1178 20.5811 14.5891 +TCONS_00003861 1199 1199 0.00263063 0.00190381 +TCONS_00003862 988 988 0 0 +TCONS_00003863 1067 1067 6.17226 3.89094 +TCONS_00003864 1700 1700 0 0 +TCONS_00003865 3539 3539 80.9116 192.403 +TCONS_00003866 2021 2021 9281.87 12111.1 +TCONS_00003867 2137 2137 619.795 859.539 +TCONS_00003869 2153 2153 61.2429 85.6252 +TCONS_00003870 771 771 124.82 52.5665 +TCONS_00003871 1036 1036 116.701 71.0097 +TCONS_00003872 2262 2262 46.6761 68.8556 +TCONS_00003873 2379 2379 64.3402 100.235 +TCONS_00003874 2306 2306 0 0 +TCONS_00003875 2258 2258 2044.64 3010.43 +TCONS_00003876 2387 2387 89.4237 139.818 +TCONS_00003877 2127 2127 84.7096 116.878 +TCONS_00003878 2380 2380 131.981 205.705 +TCONS_00003879 3517 3517 24.7057 58.3642 +TCONS_00003880 3211 3211 114.901 246.584 +TCONS_00003881 5325 5325 81.5597 296.92 +TCONS_00003882 3759 3759 924.213 2341.46 +TCONS_00003883 1946 1946 145.793 182.501 +TCONS_00003884 2880 2880 110.47 211.227 +TCONS_00003885 2135 2135 2753.11 3814.16 +TCONS_00003886 2608 2608 7.28077 12.5213 +TCONS_00003887 2510 2510 13.8782 22.906 +TCONS_00003888 1832 1832 6.23713 7.30491 +TCONS_00003891 1918 1918 54.3546 66.9645 +TCONS_00003892 2069 2069 5.25856 7.03985 +TCONS_00003893 2242 2242 98.0658 143.278 +TCONS_00003894 1570 1570 8.09893 7.98539 +TCONS_00003895 1104 1104 368.436 241.896 +TCONS_00003896 2483 2483 18.7806 30.6389 +TCONS_00003897 2182 2182 369.222 523.787 +TCONS_00003898 2193 2193 54.3547 77.5315 +TCONS_00003899 2923 2923 1558.75 3027.81 +TCONS_00003900 4402 4402 27.5594 82.348 +TCONS_00003901 2005 2005 81.8632 105.89 +TCONS_00003902 1987 1987 2573.28 3295.79 +TCONS_00003903 1996 1996 1935.88 2491.74 +TCONS_00003904 2299 2299 10727 16104.9 +TCONS_00003905 2728 2728 9.42927 17.0162 +TCONS_00003906 781 781 3497.47 1497.65 +TCONS_00003907 813 813 287.146 129.454 +TCONS_00003908 909 909 2144.31 1112.24 +TCONS_00003909 990 990 2582.12 1487.19 +TCONS_00003910 2914 2914 7.98983 15.4691 +TCONS_00003911 4362 4362 108.205 320.258 +TCONS_00003912 2868 2868 13.7309 26.1378 +TCONS_00003913 5269 5269 508.04 1829.42 +TCONS_00003914 3115 3115 335.13 696.465 +TCONS_00003915 3129 3129 9.06391 18.9263 +TCONS_00003916 3839 3839 64.5446 167.171 +TCONS_00003917 732 732 9483.65 3732.47 +TCONS_00003918 1148 1148 34.032 23.4023 +TCONS_00003919 1456 1456 125.18 113.337 +TCONS_00003920 1475 1475 0.00410762 0.00377417 +TCONS_00003921 2016 2016 29.5145 38.4065 +TCONS_00003922 1116 1116 217.941 144.938 +TCONS_00003923 1302 1302 6061.88 4828.42 +TCONS_00003924 1497 1497 3.29146 3.07545 +TCONS_00003925 2970 2970 461.378 911.54 +TCONS_00003926 1629 1629 469.614 482.618 +TCONS_00003927 2053 2053 255.8 339.556 +TCONS_00003928 1877 1877 273.568 329.105 +TCONS_00003929 2452 2452 0.0719544 0.11581 +TCONS_00003932 2431 2431 0 0 +TCONS_00003934 2499 2499 187.255 307.608 +TCONS_00003935 262 262 911.904 55.961 +TCONS_00003936 335 335 541.972 61.2015 +TCONS_00003937 2236 2236 12.4079 18.0758 +TCONS_00003938 5141 5141 436.201 1531.26 +TCONS_00003939 6420 6420 71.0861 313.817 +TCONS_00003940 6002 6002 517.017 2129.65 +TCONS_00003941 5915 5915 56.0363 227.373 +TCONS_00003942 1231 1231 307.035 229.15 +TCONS_00003943 2279 2279 24.7337 36.7839 +TCONS_00003944 1777 1777 10.1417 11.4837 +TCONS_00003945 1557 1557 9.1237 8.91194 +TCONS_00003946 1504 1504 99.1861 93.1678 +TCONS_00003947 2595 2595 308.162 527.137 +TCONS_00003948 2625 2625 1151.82 1994.71 +TCONS_00003949 1966 1966 90.1292 114.097 +TCONS_00003950 1920 1920 94.3006 116.311 +TCONS_00003951 1277 1277 70.28 54.7375 +TCONS_00003952 1108 1108 7.73054 5.09734 +TCONS_00003953 1120 1120 4.02882 2.69069 +TCONS_00003954 1150 1150 124.765 85.9719 +TCONS_00003955 887 887 80.9911 40.7502 +TCONS_00003956 704 704 0 0 +TCONS_00003957 734 734 15.2683 6.0307 +TCONS_00003958 657 657 0 0 +TCONS_00003959 2149 2149 84.9166 118.484 +TCONS_00003961 3841 3841 596.692 1546.28 +TCONS_00003962 1430 1430 369.223 327.504 +TCONS_00003963 3021 3021 0 0 +TCONS_00003964 3127 3127 0.0743201 0.155082 +TCONS_00003965 3228 3228 1271.79 2744.63 +TCONS_00003966 3152 3152 0 0 +TCONS_00003967 3646 3646 3.49931 8.58583 +TCONS_00003968 1431 1431 29.5408 26.2239 +TCONS_00003969 3127 3127 16079.2 33552.1 +TCONS_00003970 2981 2981 14.0732 27.9136 +TCONS_00003971 1118 1118 0 0 +TCONS_00003972 958 958 21.0954 11.6728 +TCONS_00003973 2097 2097 0 0 +TCONS_00003974 2755 2755 0 0 +TCONS_00003975 4710 4710 0 0 +TCONS_00003976 2572 2572 0 0 +TCONS_00003977 2145 2145 0 0 +TCONS_00003978 1954 1954 0 0 +TCONS_00003979 1253 1253 29.8724 22.7593 +TCONS_00003980 2347 2347 128.417 197.154 +TCONS_00003981 2216 2216 30.2139 43.5884 +TCONS_00003982 2266 2266 86.695 128.136 +TCONS_00003983 728 728 2926.63 1143.55 +TCONS_00003984 1641 1641 19.2688 19.9658 +TCONS_00003985 1826 1826 0 0 +TCONS_00003986 2248 2248 236.997 347.267 +TCONS_00003987 1345 1345 69.2073 57.2289 +TCONS_00003988 1530 1530 17.9186 17.1607 +TCONS_00003989 2072 2072 30.3894 40.748 +TCONS_00003990 2012 2012 1015.4 1318.43 +TCONS_00003991 2642 2642 580.134 1011.65 +TCONS_00003993 1305 1305 0 0 +TCONS_00003995 2209 2209 3.16959 4.55695 +TCONS_00003996 2303 2303 0 0 +TCONS_00003997 3322 3322 6.08777 13.5424 +TCONS_00003998 2754 2754 1.76783 3.22274 +TCONS_00003999 2902 2902 0 0 +TCONS_00004000 2222 2222 0.672289 0.972736 +TCONS_00004001 620 620 3.09402 0.972736 +TCONS_00004002 6472 6472 40.79 181.572 +TCONS_00004003 7432 7432 57.2336 293.61 +TCONS_00004004 1698 1698 461.625 496.924 +TCONS_00004005 2041 2041 121.624 160.415 +TCONS_00004006 5724 5724 17.9136 70.2675 +TCONS_00004007 3322 3322 24.9979 55.6086 +TCONS_00004008 6356 6356 248.636 1086.38 +TCONS_00004009 2648 2648 1462.4 2556.35 +TCONS_00004010 6458 6458 76.646 340.422 +TCONS_00004011 5892 5892 320.88 1296.79 +TCONS_00004012 2208 2208 104.858 150.681 +TCONS_00004013 1660 1660 1041.2 1092.85 +TCONS_00004014 2505 2505 3.85239 6.34475 +TCONS_00004015 847 847 0 0 +TCONS_00004016 5002 5002 104.237 355.675 +TCONS_00004017 4370 4370 9.1926 27.2597 +TCONS_00004018 3630 3630 3.72339 9.09351 +TCONS_00004020 2773 2773 0 0 +TCONS_00004021 1349 1349 3.49867 2.90301 +TCONS_00004022 6343 6343 1.72636 7.52724 +TCONS_00004023 7735 7735 2.23938 11.9677 +TCONS_00004024 9646 9646 0.720431 4.82342 +TCONS_00004025 3491 3491 0 0 +TCONS_00004026 2198 2198 0 0 +TCONS_00004027 2084 2084 5810.49 7840.36 +TCONS_00004028 2067 2067 2977.67 3982.11 +TCONS_00004029 4813 4813 2247.47 7368.48 +TCONS_00004030 4920 4920 291.742 978.565 +TCONS_00004031 2710 2710 680.205 1218.85 +TCONS_00004032 2632 2632 373.015 647.832 +TCONS_00004033 1413 1413 4383.84 3835.82 +TCONS_00004034 1429 1429 60.5811 53.6932 +TCONS_00004035 1624 1624 167.1 171.136 +TCONS_00004036 1294 1294 368.067 291.092 +TCONS_00004037 1804 1804 124.087 142.874 +TCONS_00004038 1877 1877 0 0 +TCONS_00004039 1802 1802 1615.1 1857.35 +TCONS_00004040 1200 1200 0 0 +TCONS_00004041 4259 4259 2.35862 6.80915 +TCONS_00004042 1066 1066 0.620732 0.390866 +TCONS_00004043 1559 1559 0 0 +TCONS_00004044 1448 1448 18.7761 16.8935 +TCONS_00004046 1615 1615 0 0 +TCONS_00004048 1480 1480 0 0 +TCONS_00004049 1642 1642 0 0 +TCONS_00004051 894 894 13.8451 7.03458 +TCONS_00004052 3694 3694 3.18018 7.91072 +TCONS_00004053 5038 5038 3.26393 11.2202 +TCONS_00004054 4725 4725 0 0 +TCONS_00004055 4698 4698 0 0 +TCONS_00004056 4715 4715 38.7758 124.443 +TCONS_00004058 4643 4643 8.0076 25.2911 +TCONS_00004059 4783 4783 0.00860012 0.0280137 +TCONS_00004060 4761 4761 20.8512 67.5955 +TCONS_00004061 5221 5221 0 0 +TCONS_00004062 4528 4528 2.66406 8.19757 +TCONS_00004063 1548 1548 20.504 19.8977 +TCONS_00004064 2832 2832 362.549 680.915 +TCONS_00004065 2864 2864 0 0 +TCONS_00004066 6318 6318 81.1207 352.267 +TCONS_00004067 3475 3475 541.745 1263.72 +TCONS_00004068 4486 4486 413.595 1260.39 +TCONS_00004069 1357 1357 0 0 +TCONS_00004070 3293 3293 1890.01 4165.63 +TCONS_00004071 3137 3137 29.3553 61.4627 +TCONS_00004072 3219 3219 16.2231 34.9076 +TCONS_00004074 643 643 0 0 +TCONS_00004075 647 647 0 0 +TCONS_00004076 1883 1883 1.61149 1.94547 +TCONS_00004077 3128 3128 1838.67 3838.01 +TCONS_00004078 2156 2156 35.0244 49.0427 +TCONS_00004079 6306 6306 1225.19 5310.01 +TCONS_00004080 8192 8192 19.3316 109.558 +TCONS_00004081 8007 8007 282.827 1565.88 +TCONS_00004082 2592 2592 6.16535 10.5333 +TCONS_00004083 584 584 0 0 +TCONS_00004084 2710 2710 3.76784 6.75155 +TCONS_00004085 2267 2267 156.917 232.036 +TCONS_00004086 1812 1812 41266.6 47747.9 +TCONS_00004087 1801 1801 22821.7 26228.6 +TCONS_00004088 1753 1753 0 0 +TCONS_00004089 1683 1683 0 0 +TCONS_00004090 1644 1644 0 0 +TCONS_00004091 1453 1453 20629.2 18633.7 +TCONS_00004092 1448 1448 0 0 +TCONS_00004093 1276 1276 105.569 82.148 +TCONS_00004094 1539 1539 0 0 +TCONS_00004095 2012 2012 0 0 +TCONS_00004096 1942 1942 2.80192 3.49948 +TCONS_00004097 2436 2436 0 0 +TCONS_00004098 2398 2398 11.996 18.8496 +TCONS_00004099 2411 2411 0.0151097 0.023881 +TCONS_00004100 920 920 0 0 +TCONS_00004101 1279 1279 0 0 +TCONS_00004102 1153 1153 28.1319 19.4444 +TCONS_00004103 958 958 88.9671 49.2287 +TCONS_00004104 2913 2913 1.17399 2.27214 +TCONS_00004105 2396 2396 0.660685 1.03722 +TCONS_00004106 3934 3934 55.6441 147.856 +TCONS_00004107 1822 1822 0 0 +TCONS_00004108 951 951 44.3453 24.3184 +TCONS_00004109 2235 2235 639.692 931.45 +TCONS_00004110 5191 5191 2221.12 7875.62 +TCONS_00004111 5161 5161 1737.15 6122.71 +TCONS_00004112 5134 5134 29.4655 103.291 +TCONS_00004113 2995 2995 99.3743 198.089 +TCONS_00004114 2961 2961 392.369 772.702 +TCONS_00004115 1345 1345 7.03949 5.8211 +TCONS_00004116 1500 1500 636.821 596.38 +TCONS_00004117 1440 1440 269.732 241.162 +TCONS_00004118 1383 1383 0 0 +TCONS_00004119 2036 2036 858.553 1129.35 +TCONS_00004120 3391 3391 345.309 784.994 +TCONS_00004121 7931 7931 0 0 +TCONS_00004122 4405 4405 2.49757 7.4681 +TCONS_00004123 3250 3250 5.51457 11.9866 +TCONS_00004124 2267 2267 0 0 +TCONS_00004125 2262 2262 0.00411017 0.00606323 +TCONS_00004126 2238 2238 0.662916 0.966673 +TCONS_00004127 2316 2316 0 0 +TCONS_00004128 2443 2443 15.7761 25.2911 +TCONS_00004129 720 720 0 0 +TCONS_00004130 2190 2190 0 0 +TCONS_00004132 828 828 1844.31 851.031 +TCONS_00004133 1273 1273 10771.4 8358.84 +TCONS_00004134 2805 2805 1727.59 3211.66 +TCONS_00004135 2730 2730 11.5832 20.9196 +TCONS_00004136 2689 2689 27.5409 48.9413 +TCONS_00004137 4020 4020 234.442 637.206 +TCONS_00004138 8724 8724 620.968 3752.75 +TCONS_00004139 1534 1534 48.6097 46.6911 +TCONS_00004140 1543 1543 0 0 +TCONS_00004141 1183 1183 0 0 +TCONS_00004142 1830 1830 431.496 504.757 +TCONS_00004143 1151 1151 2296.45 1584.03 +TCONS_00004144 7188 7188 154.918 768.012 +TCONS_00004145 7105 7105 294.282 1441.65 +TCONS_00004146 1411 1411 80.1649 70.0302 +TCONS_00004148 852 852 12.2016 5.83725 +TCONS_00004149 697 697 0 0 +TCONS_00004150 2339 2339 1907.91 2918.36 +TCONS_00004151 2534 2534 123.001 205.099 +TCONS_00004152 1368 1368 302.328 254.917 +TCONS_00004153 1805 1805 593.049 683.257 +TCONS_00004154 1262 1262 0 0 +TCONS_00004155 1222 1222 2.5648 1.89787 +TCONS_00004156 252 252 28.2921 1.53651 +TCONS_00004158 1002 1002 2551.5 1491.2 +TCONS_00004160 1840 1840 0 0 +TCONS_00004162 1720 1720 0 0 +TCONS_00004163 1734 1734 0 0 +TCONS_00004164 1855 1855 0 0 +TCONS_00004165 1007 1007 203.489 119.647 +TCONS_00004169 2100 2100 0 0 +TCONS_00004170 2164 2164 0 0 +TCONS_00004172 1844 1844 0 0 +TCONS_00004173 2100 2100 0 0 +TCONS_00004175 1906 1906 0 0 +TCONS_00004176 6978 6978 0 0 +TCONS_00004177 7099 7099 0 0 +TCONS_00004178 3105 3105 4.85319 10.0516 +TCONS_00004179 4316 4316 25.3677 74.2569 +TCONS_00004180 1987 1987 103.4 132.431 +TCONS_00004181 1537 1537 69.6204 67.0201 +TCONS_00004182 2045 2045 5.24381 6.93114 +TCONS_00004184 1904 1904 29.5257 36.0832 +TCONS_00004185 1798 1798 76.6549 87.9355 +TCONS_00004186 2196 2196 51.0704 72.9552 +TCONS_00004187 538 538 25761.5 6605.85 +TCONS_00004188 2732 2732 39.8257 71.9825 +TCONS_00004189 2749 2749 605.295 1101.31 +TCONS_00004190 2564 2564 7.31529 12.3531 +TCONS_00004191 2770 2770 43.1838 79.2122 +TCONS_00004192 2745 2745 0 0 +TCONS_00004193 1894 1894 21.6657 26.3244 +TCONS_00004194 1928 1928 8.38648 10.3914 +TCONS_00004196 1166 1166 30.4164 21.303 +TCONS_00004197 905 905 3.86289 1.99274 +TCONS_00004199 2892 2892 254.894 489.535 +TCONS_00004200 2877 2877 16.2374 31.0125 +TCONS_00004201 2904 2904 36.5348 70.4769 +TCONS_00004202 2907 2907 67.1553 129.687 +TCONS_00004203 2415 2415 486.625 770.493 +TCONS_00004204 892 892 7.32427 3.71105 +TCONS_00004205 1700 1700 46.1919 49.7894 +TCONS_00004206 3946 3946 1262.97 3366.64 +TCONS_00004207 1631 1631 0 0 +TCONS_00004208 2008 2008 136.313 176.609 +TCONS_00004209 1984 1984 36.5938 46.7907 +TCONS_00004210 3029 3029 2.09199 4.22037 +TCONS_00004211 1559 1559 183.966 179.956 +TCONS_00004212 2474 2474 12.3944 20.1415 +TCONS_00004213 3055 3055 19.0376 38.7564 +TCONS_00004214 2975 2975 489.73 969.284 +TCONS_00004215 2963 2963 0 0 +TCONS_00004216 3650 3650 0 0 +TCONS_00004217 2014 2014 0 0 +TCONS_00004219 5368 5368 12.0265 44.1482 +TCONS_00004220 574 574 22.4368 6.32434 +TCONS_00004221 1122 1122 12.0336 8.05377 +TCONS_00004222 2482 2482 0.741598 1.20933 +TCONS_00004223 1160 1160 1278.79 890.216 +TCONS_00004224 4268 4268 475.701 1376.34 +TCONS_00004225 1512 1512 444.215 419.774 +TCONS_00004226 1512 1512 239.585 226.402 +TCONS_00004227 2216 2216 6.43042 9.27691 +TCONS_00004228 2663 2663 92.2487 162.234 +TCONS_00004229 3026 3026 40.1795 80.9729 +TCONS_00004230 2696 2696 252.458 449.878 +TCONS_00004231 1404 1404 128.744 111.831 +TCONS_00004232 2173 2173 58.4296 82.5178 +TCONS_00004233 1966 1966 24.7015 31.2703 +TCONS_00004234 2746 2746 59.8807 108.823 +TCONS_00004235 1912 1912 69.2783 85.0566 +TCONS_00004236 2029 2029 19.5295 25.5927 +TCONS_00004237 596 596 206.37 61.3799 +TCONS_00004238 2015 2015 0 0 +TCONS_00004239 1171 1171 0 0 +TCONS_00004240 4170 4170 1.07348 3.03153 +TCONS_00004241 4395 4395 2.24461 6.69583 +TCONS_00004242 359 359 209.699 27.2366 +TCONS_00004243 1100 1100 3022.24 1975.7 +TCONS_00004244 1097 1097 600.304 391.158 +TCONS_00004245 1081 1081 56.6475 36.2708 +TCONS_00004246 1078 1078 20.6036 13.1486 +TCONS_00004247 1224 1224 220.082 163.164 +TCONS_00004248 3996 3996 173.204 467.825 +TCONS_00004249 3981 3981 224.217 603.235 +TCONS_00004250 3694 3694 28.8937 71.8735 +TCONS_00004251 1080 1080 61.2846 39.1966 +TCONS_00004252 1639 1639 0 0 +TCONS_00004253 1143 1143 5327.08 3644.36 +TCONS_00004254 4362 4362 0 0 +TCONS_00004255 4014 4014 0 0 +TCONS_00004256 1625 1625 0 0 +TCONS_00004258 3950 3950 1079.6 2880.9 +TCONS_00004259 4091 4091 190.585 527.569 +TCONS_00004260 2521 2521 0 0 +TCONS_00004261 3241 3241 54.8351 118.842 +TCONS_00004262 2368 2368 0 0 +TCONS_00004263 3381 3381 480.233 1088.32 +TCONS_00004264 5835 5835 231.207 925.072 +TCONS_00004265 3402 3402 9.93512 22.6629 +TCONS_00004266 941 941 202.307 109.513 +TCONS_00004267 2535 2535 204.725 341.517 +TCONS_00004268 2916 2916 24.9259 48.2943 +TCONS_00004269 2888 2888 16.2472 31.1576 +TCONS_00004270 3481 3481 502.897 1175.24 +TCONS_00004271 3477 3477 391.844 914.604 +TCONS_00004272 15880 15880 522.042 5795.83 +TCONS_00004273 3162 3162 4.31444 9.10958 +TCONS_00004274 3124 3124 159.431 332.344 +TCONS_00004275 2172 2172 1.59155 2.24656 +TCONS_00004276 5751 5751 6.49883 25.6162 +TCONS_00004277 2675 2675 5.95027 10.515 +TCONS_00004278 4237 4237 2054.85 5900.24 +TCONS_00004279 4234 4234 42.4189 121.711 +TCONS_00004280 4234 4234 258.099 740.553 +TCONS_00004281 4171 4171 18.6479 52.6749 +TCONS_00004282 2314 2314 10.9373 16.5365 +TCONS_00004283 2117 2117 0 0 +TCONS_00004284 1241 1241 17.4303 13.1319 +TCONS_00004285 1362 1362 3376.38 2832.57 +TCONS_00004286 1257 1257 96.5278 73.8157 +TCONS_00004287 1032 1032 6.66589 4.03719 +TCONS_00004288 1575 1575 0 0 +TCONS_00004289 2084 2084 129.553 174.812 +TCONS_00004290 1629 1629 18322.2 18829.5 +TCONS_00004291 2049 2049 6.63996 8.7953 +TCONS_00004292 2093 2093 12.9153 17.5093 +TCONS_00004293 2232 2232 0 0 +TCONS_00004294 2973 2973 514.068 1016.73 +TCONS_00004295 2401 2401 0 0 +TCONS_00004296 2281 2281 50.737 75.5276 +TCONS_00004297 1715 1715 32.53 35.4085 +TCONS_00004298 1045 1045 26.468 16.2736 +TCONS_00004299 1249 1249 0 0 +TCONS_00004301 922 922 0 0 +TCONS_00004302 999 999 9.73731e-4 5.67024e-4 +TCONS_00004303 968 968 20.8282 11.6723 +TCONS_00004304 888 888 0 0 +TCONS_00004308 1452 1452 0 0 +TCONS_00004309 2467 2467 0 0 +TCONS_00004310 1607 1607 726.874 735.696 +TCONS_00004311 2350 2350 6656.64 10233.9 +TCONS_00004312 2456 2456 1622.91 2616.66 +TCONS_00004313 2126 2126 12396.4 17095.1 +TCONS_00004314 2135 2135 0 0 +TCONS_00004315 2073 2073 0 0 +TCONS_00004316 2015 2015 19.2974 25.0975 +TCONS_00004317 1812 1812 0 0 +TCONS_00004318 1671 1671 21.1379 22.3509 +TCONS_00004319 1978 1978 3.79706 4.839 +TCONS_00004320 3776 3776 0.00195775 0.0049834 +TCONS_00004321 3773 3773 32.1432 81.7516 +TCONS_00004322 3705 3705 128.928 321.713 +TCONS_00004323 3834 3834 127.723 330.354 +TCONS_00004324 3063 3063 162.799 332.342 +TCONS_00004325 3139 3139 65.1901 136.584 +TCONS_00004326 4775 4775 121.311 394.467 +TCONS_00004327 4317 4317 161.14 471.807 +TCONS_00004328 3921 3921 1127.86 2986.55 +TCONS_00004329 3797 3797 977.66 2503.13 +TCONS_00004330 1860 1860 817.941 974.161 +TCONS_00004331 2544 2544 19.2164 32.1786 +TCONS_00004332 2537 2537 228.027 380.711 +TCONS_00004333 927 927 285.674 151.813 +TCONS_00004334 5160 5160 351.787 1239.65 +TCONS_00004335 4949 4949 53.2798 179.804 +TCONS_00004336 5786 5786 517.716 2053.48 +TCONS_00004337 5850 5850 199.863 801.782 +TCONS_00004338 6175 6175 385.109 1633.41 +TCONS_00004340 6283 6283 292.991 1265.07 +TCONS_00004342 1915 1915 0 0 +TCONS_00004343 2088 2088 28.2445 38.1914 +TCONS_00004344 5241 5241 101.151 362.236 +TCONS_00004345 5087 5087 980.268 3403.75 +TCONS_00004346 5096 5096 1001.05 3482.3 +TCONS_00004347 5000 5000 14.401 49.1184 +TCONS_00004348 5136 5136 4096.6 14366.4 +TCONS_00004349 2198 2198 14.286 20.4281 +TCONS_00004350 2326 2326 0.63978 0.972736 +TCONS_00004351 2057 2057 431.919 574.563 +TCONS_00004352 3348 3348 1.65232e-4 3.70601e-4 +TCONS_00004353 3300 3300 1.75827 3.88399 +TCONS_00004354 3333 3333 0.00295076 0.006587 +TCONS_00004355 3494 3494 0 0 +TCONS_00004356 3639 3639 41.4875 101.588 +TCONS_00004357 4462 4462 953.215 2888.66 +TCONS_00004359 4264 4264 33.9993 98.2736 +TCONS_00004360 4498 4498 0 0 +TCONS_00004361 2089 2089 0.944197 1.27738 +TCONS_00004362 2126 2126 193.146 266.355 +TCONS_00004363 2411 2411 184.813 292.099 +TCONS_00004364 3586 3586 634.332 1529.48 +TCONS_00004365 14287 14287 1616.25 16123.9 +TCONS_00004366 14290 14290 283.723 2831.04 +TCONS_00004367 846 846 0 0 +TCONS_00004368 3903 3903 0 0 +TCONS_00004369 3883 3883 0 0 +TCONS_00004370 510 510 0 0 +TCONS_00004371 8653 8653 317.993 1905.8 +TCONS_00004372 8587 8587 402.536 2393.7 +TCONS_00004373 3921 3921 0 0 +TCONS_00004374 2834 2834 0 0 +TCONS_00004375 1637 1637 0 0 +TCONS_00004376 2740 2740 381.392 691.499 +TCONS_00004377 2731 2731 1507.46 2723.58 +TCONS_00004378 2565 2565 3090.62 5221.23 +TCONS_00004379 2574 2574 716.981 1215.82 +TCONS_00004380 2451 2451 0 0 +TCONS_00004381 2617 2617 0 0 +TCONS_00004382 2388 2388 105.248 164.634 +TCONS_00004383 4314 4314 215.254 629.791 +TCONS_00004384 4492 4492 131.698 401.896 +TCONS_00004385 1586 1586 462.44 461.188 +TCONS_00004386 540 540 28.0658 7.23642 +TCONS_00004387 738 738 132.236 52.605 +TCONS_00004388 646 646 11.3049 3.76195 +TCONS_00004389 2552 2552 132.768 223.075 +TCONS_00004390 2791 2791 42.753 79.0566 +TCONS_00004391 4088 4088 56.5353 156.379 +TCONS_00004392 4129 4129 655.899 1833.26 +TCONS_00004394 1768 1768 0 0 +TCONS_00004395 697 697 0 0 +TCONS_00004396 2041 2041 0 0 +TCONS_00004397 5192 5192 88.3184 313.221 +TCONS_00004398 1287 1287 1188.4 933.981 +TCONS_00004399 1547 1547 498.386 483.295 +TCONS_00004400 1074 1074 76.6189 48.6791 +TCONS_00004401 1607 1607 23.1245 23.4052 +TCONS_00004402 1631 1631 93.0909 95.8001 +TCONS_00004403 1553 1553 60.8488 59.2645 +TCONS_00004404 1566 1566 502.092 493.633 +TCONS_00004405 1676 1676 191.708 203.386 +TCONS_00004406 1824 1824 95.2429 111.01 +TCONS_00004408 1244 1244 5.60264 4.23291 +TCONS_00004409 934 934 0 0 +TCONS_00004410 1607 1607 1433.78 1451.18 +TCONS_00004412 1394 1394 52.7327 45.4323 +TCONS_00004413 2160 2160 0 0 +TCONS_00004414 1411 1411 6.2186 5.43243 +TCONS_00004415 2054 2054 41.6408 55.3047 +TCONS_00004416 2077 2077 154.003 207.041 +TCONS_00004418 953 953 3.81388 2.09688 +TCONS_00004419 1774 1774 0 0 +TCONS_00004420 2239 2239 110.069 160.582 +TCONS_00004421 1842 1842 1279.56 1507.67 +TCONS_00004422 2924 2924 1046.74 2033.98 +TCONS_00004423 2686 2686 0 0 +TCONS_00004424 4859 4859 0 0 +TCONS_00004425 5799 5799 0 0 +TCONS_00004426 3940 3940 0 0 +TCONS_00004427 5094 5094 0 0 +TCONS_00004428 2703 2703 0 0 +TCONS_00004429 2798 2798 5.44027e-4 0.00100868 +TCONS_00004431 2725 2725 4.8564 8.75362 +TCONS_00004432 4461 4461 0 0 +TCONS_00004433 4548 4548 0 0 +TCONS_00004434 4417 4417 0 0 +TCONS_00004435 4424 4424 0 0 +TCONS_00004436 686 686 0 0 +TCONS_00004439 2497 2497 88.8612 145.849 +TCONS_00004440 2827 2827 12.5506 23.5274 +TCONS_00004441 2683 2683 156.143 276.811 +TCONS_00004442 2803 2803 0 0 +TCONS_00004443 1653 1653 16.116 16.8357
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/salmon_cond1_rep2.sf Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,1093 @@ +Name Length EffectiveLength TPM NumReads +TCONS_00000001 1652 1652 11.6557 12.1679 +TCONS_00000002 1488 1488 0 0 +TCONS_00000003 1595 1595 8.94522 8.9779 +TCONS_00000006 78 78 0 0 +TCONS_00000007 2750 2750 26.3142 47.8961 +TCONS_00000008 4369 4369 4.96783e-4 0.00147281 +TCONS_00000009 4272 4272 11.6937 33.8664 +TCONS_00000010 937 937 0 0 +TCONS_00000012 1584 1584 89137.8 88770.3 +TCONS_00000013 694 694 46127.7 16915.3 +TCONS_00000015 1023 1023 56407.6 33804.4 +TCONS_00000016 510 510 0 0 +TCONS_00000017 854 854 0 0 +TCONS_00000018 701 701 42.3991 15.7578 +TCONS_00000019 517 517 0 0 +TCONS_00000020 1543 1543 229.739 222.133 +TCONS_00000021 2682 2682 88.533 156.888 +TCONS_00000022 3043 3043 0.67294 1.36425 +TCONS_00000023 490 490 0 0 +TCONS_00000024 2554 2554 4.41456 7.42354 +TCONS_00000025 2121 2121 36.3346 49.9782 +TCONS_00000026 2560 2560 131.115 221.04 +TCONS_00000027 955 955 43.3015 23.8685 +TCONS_00000028 2003 2003 83.1034 107.376 +TCONS_00000029 1149 1149 62.9707 43.3466 +TCONS_00000030 2398 2398 0.00110412 0.00173493 +TCONS_00000031 2554 2554 33.2725 55.9512 +TCONS_00000032 2293 2293 11.3782 17.034300000000002 +TCONS_00000033 662 662 3675.44 1264.66 +TCONS_00000034 7319 7319 3144.04 15877.9 +TCONS_00000035 673 673 2.11352 0.743665 +TCONS_00000036 971 971 21.7175 12.2167 +TCONS_00000037 1616 1616 0 0 +TCONS_00000041 2259 2259 0 0 +TCONS_00000042 2278 2278 0 0 +TCONS_00000043 2111 2111 0 0 +TCONS_00000044 2790 2790 1117.41 2065.47 +TCONS_00000045 3054 3054 9.99311 20.3367 +TCONS_00000046 2960 2960 18.4992 36.4178 +TCONS_00000047 2590 2590 22.7491 38.834 +TCONS_00000048 2684 2684 11.3619 20.1504 +TCONS_00000049 2530 2530 5.87029 9.77191 +TCONS_00000050 1239 1239 472.462 355.284 +TCONS_00000051 1181 1181 230.975 164.219 +TCONS_00000052 1932 1932 17.3332 21.526 +TCONS_00000053 2192 2192 705.236 1005.45 +TCONS_00000054 2558 2558 5.66941 9.54973 +TCONS_00000055 1747 1747 378.825 420.915 +TCONS_00000056 1594 1594 69.3695 69.5739 +TCONS_00000057 1741 1741 170.89 189.153 +TCONS_00000058 491 491 0 0 +TCONS_00000059 2141 2141 0 0 +TCONS_00000060 2536 2536 587.348 980.212 +TCONS_00000061 3859 3859 12.4376 32.3895 +TCONS_00000062 2432 2432 97.5972 155.702 +TCONS_00000063 1939 1939 58.1464 72.4992 +TCONS_00000064 2667 2667 103.662 182.599 +TCONS_00000065 1170 1170 223.198 156.954 +TCONS_00000066 2611 2611 41.3345 71.1739 +TCONS_00000067 2467 2467 525.643 851.595 +TCONS_00000068 2329 2329 899.906 1370.15 +TCONS_00000069 2616 2616 18.9562 32.7076 +TCONS_00000070 1048 1048 9.2071 6.82124 +TCONS_00000071 3243 3243 20.8321 45.1782 +TCONS_00000072 3201 3201 410.47 877.992 +TCONS_00000073 3231 3231 0 0 +TCONS_00000074 3026 3026 36.5684 73.6954 +TCONS_00000076 2930 2930 63.1376 122.955 +TCONS_00000077 2890 2890 3.6043 6.91713 +TCONS_00000078 3311 3311 61.7799 136.951 +TCONS_00000079 2590 2590 73.3486 125.21 +TCONS_00000080 2308 2308 0 0 +TCONS_00000081 585 585 30.2889 8.77319 +TCONS_00000082 1239 1239 8.79699 6.6152 +TCONS_00000083 1306 1306 0 0 +TCONS_00000084 905 905 3.52411e-4 1.81798e-4 +TCONS_00000085 850 850 4.72177 2.25222 +TCONS_00000086 906 906 100.675 52.0065 +TCONS_00000087 848 848 13.2816 6.31636 +TCONS_00000088 1808 1808 120.144 138.673 +TCONS_00000089 921 921 3.88173 2.04637 +TCONS_00000090 1101 1101 1.75278 1.36425 +TCONS_00000091 1925 1925 0 0 +TCONS_00000092 2324 2324 0 0 +TCONS_00000093 2112 2112 59.8043 81.8803 +TCONS_00000094 2032 2032 0 0 +TCONS_00000095 2009 2009 0 0 +TCONS_00000096 1745 1745 59.0124 65.4857 +TCONS_00000097 1212 1212 0 0 +TCONS_00000098 1849 1849 0 0 +TCONS_00000099 1859 1859 0 0 +TCONS_00000100 2089 2089 15.7707 21.3359 +TCONS_00000101 1943 1943 112.444 140.518 +TCONS_00000102 5706 5706 1531.34 5987.34 +TCONS_00000103 3093 3093 4019.4 8290.58 +TCONS_00000104 3203 3203 89.8929 192.407 +TCONS_00000105 4834 4834 0 0 +TCONS_00000106 3951 3951 0.0317876 0.0848471 +TCONS_00000107 3939 3939 0.48085 1.2794 +TCONS_00000108 4854 4854 0 0 +TCONS_00000109 5564 5564 0 0 +TCONS_00000110 2241 2241 0 0 +TCONS_00000111 722 722 158.78 61.3684 +TCONS_00000112 1671 1671 44.2887 46.83 +TCONS_00000113 4460 4460 49.7318 150.639 +TCONS_00000114 1704 1704 764.08 825.748 +TCONS_00000115 1561 1561 48.1342 47.1532 +TCONS_00000116 2709 2709 543.282 973.115 +TCONS_00000117 2763 2763 0 0 +TCONS_00000118 2677 2677 528.13 934.028 +TCONS_00000119 2697 2697 0 0 +TCONS_00000120 2601 2601 0 0 +TCONS_00000121 2598 2598 0 0 +TCONS_00000122 2571 2571 57.5007 97.3844 +TCONS_00000124 8659 8659 8.16647 48.9779 +TCONS_00000125 8716 8716 0 0 +TCONS_00000126 8662 8662 1.38685 8.32051 +TCONS_00000127 8719 8719 0 0 +TCONS_00000128 8720 8720 0 0 +TCONS_00000129 2902 2902 1.75071 3.3747 +TCONS_00000130 2209 2209 0 0 +TCONS_00000131 2217 2217 0 0 +TCONS_00000132 1403 1403 0 0 +TCONS_00000133 1817 1817 0.0309458 0.0359154 +TCONS_00000134 2425 2425 2560.32 4071.95 +TCONS_00000135 2248 2248 9.53494 13.9714 +TCONS_00000136 1904 1904 0 0 +TCONS_00000137 2845 2845 0 0 +TCONS_00000138 1585 1585 0 0 +TCONS_00000140 2728 2728 0 0 +TCONS_00000141 2673 2673 0 0 +TCONS_00000142 1091 1091 0 0 +TCONS_00000144 1894 1894 1.12281 1.36425 +TCONS_00000145 2174 2174 0 0 +TCONS_00000146 545 545 60.0249 15.6888 +TCONS_00000147 760 760 25.871 10.6941 +TCONS_00000149 956 956 0 0 +TCONS_00000151 3027 3027 99.8396 201.275 +TCONS_00000152 3077 3077 0 0 +TCONS_00000154 3151 3151 0 0 +TCONS_00000156 3196 3196 11.169 23.851 +TCONS_00000157 3099 3099 0.259186 0.535708 +TCONS_00000158 1950 1950 1.78236 2.23618 +TCONS_00000159 1279 1279 2.37941 1.85656 +TCONS_00000160 1055 1055 0 0 +TCONS_00000163 2070 2070 0 0 +TCONS_00000164 2922 2922 0 0 +TCONS_00000165 4625 4625 0 0 +TCONS_00000166 3128 3128 89.3643 186.538 +TCONS_00000167 2388 2388 1.57151 2.45824 +TCONS_00000168 3171 3171 0 0 +TCONS_00000169 3129 3129 24.8044 51.7938 +TCONS_00000170 3557 3557 0 0 +TCONS_00000171 3426 3426 0 0 +TCONS_00000172 3137 3137 0 0 +TCONS_00000173 1293 1293 6.40254 5.05903 +TCONS_00000174 3963 3963 40.3122 107.943 +TCONS_00000175 1412 1412 10.6159 9.28128 +TCONS_00000176 1421 1421 28.1144 24.7589 +TCONS_00000177 1248 1248 7.1959 5.45699 +TCONS_00000178 687 687 0 0 +TCONS_00000179 3530 3530 0 0 +TCONS_00000180 1883 1883 0 0 +TCONS_00000181 2698 2698 0 0 +TCONS_00000182 1936 1936 0 0 +TCONS_00000183 1293 1293 9.49601 7.50336 +TCONS_00000184 2364 2364 0 0 +TCONS_00000185 2257 2257 44.5618 65.5791 +TCONS_00000186 2337 2337 53.0018 80.9973 +TCONS_00000187 2265 2265 105.632 156.049 +TCONS_00000188 2483 2483 38.6123 62.9926 +TCONS_00000189 3669 3669 856.164 2114.58 +TCONS_00000190 1363 1363 408.69 343.154 +TCONS_00000191 1270 1270 129.745 100.41 +TCONS_00000192 2094 2094 9.33748 12.6655 +TCONS_00000193 722 722 3399.2 1313.79 +TCONS_00000194 8441 8441 5.20959 30.4413 +TCONS_00000195 5417 5417 0 0 +TCONS_00000196 5158 5158 3.06783 10.8063 +TCONS_00000197 3979 3979 0 0 +TCONS_00000198 2204 2204 7774.02 11149.3 +TCONS_00000199 1523 1523 60.0782 57.2398 +TCONS_00000200 3524 3524 15.1339 35.8269 +TCONS_00000201 3414 3414 0 0 +TCONS_00000202 6251 6251 99.3841 426.869 +TCONS_00000203 6278 6278 314.497 1356.81 +TCONS_00000204 6336 6336 15.9235 69.3504 +TCONS_00000205 1476 1476 12.8748 11.8388 +TCONS_00000206 902 902 11155.4 5731.05 +TCONS_00000207 842 842 296.047 139.536 +TCONS_00000208 960 960 8727.99 4841.85 +TCONS_00000209 2323 2323 9.03264 13.7143 +TCONS_00000210 2400 2400 167.75 263.827 +TCONS_00000211 1756 1756 61.791 69.0496 +TCONS_00000214 9113 9113 1221.87 7720.28 +TCONS_00000215 3115 3115 107.24 222.865 +TCONS_00000216 2961 2961 664.788 1309.18 +TCONS_00000217 1460 1460 178.752 162.345 +TCONS_00000218 1536 1536 0 0 +TCONS_00000219 3848 3848 156.399 406.071 +TCONS_00000220 3735 3735 63.6171 160.092 +TCONS_00000221 5410 5410 47.7372 176.657 +TCONS_00000222 5336 5336 108.56 396.06 +TCONS_00000223 5482 5482 27.5474 103.344 +TCONS_00000224 3780 3780 349.587 890.854 +TCONS_00000225 654 654 18.1401 6.13911 +TCONS_00000227 5515 5515 1187.91 4484.15 +TCONS_00000228 5902 5902 39.0163 157.954 +TCONS_00000229 5548 5548 23.2515 88.3131 +TCONS_00000230 5400 5400 0 0 +TCONS_00000231 1035 1035 87.5535 53.2124 +TCONS_00000232 2038 2038 143.564 189.049 +TCONS_00000233 1574 1574 8.00113 7.91158 +TCONS_00000234 7662 7662 1013.51 5364.12 +TCONS_00000235 10579 10579 133.035 978.442 +TCONS_00000236 10667 10667 34.3558 254.816 +TCONS_00000237 8667 8667 0 0 +TCONS_00000240 8703 8703 26.8258 161.721 +TCONS_00000241 1936 1936 10052.2 12512.2 +TCONS_00000243 1870 1870 312.078 373.889 +TCONS_00000244 2051 2051 4.31842 5.72629 +TCONS_00000245 1235 1235 41.6915 31.2335 +TCONS_00000246 1467 1467 18.7036 17.0795 +TCONS_00000247 1400 1400 0.0125835 0.0108948 +TCONS_00000248 1427 1427 490.761 434.269 +TCONS_00000249 1184 1184 18.6668 13.3114 +TCONS_00000250 309 309 437.229 41.3424 +TCONS_00000251 1132 1132 14.7744 9.99258 +TCONS_00000252 1125 1125 4.83851 3.24855 +TCONS_00000253 1924 1924 828.397 1024.09 +TCONS_00000256 1795 1795 80.8092 92.5298 +TCONS_00000258 4216 4216 2389.86 6826.7 +TCONS_00000259 4052 4052 0 0 +TCONS_00000260 2237 2237 10.2962 15.0067 +TCONS_00000261 3653 3653 264.412 650.064 +TCONS_00000262 759 759 0 0 +TCONS_00000263 5213 5213 0 0 +TCONS_00000264 2837 2837 0 0 +TCONS_00000265 2933 2933 6.11415 11.9197 +TCONS_00000266 781 781 98.8168 42.3142 +TCONS_00000267 3319 3319 20.783 46.1882 +TCONS_00000268 2947 2947 175.866 344.597 +TCONS_00000269 2822 2822 142.443 266.521 +TCONS_00000270 2918 2918 0 0 +TCONS_00000271 2688 2688 0.00965964 0.0171587 +TCONS_00000272 1547 1547 376.331 364.936 +TCONS_00000273 1773 1773 2.41569 2.7285 +TCONS_00000274 3728 3728 1.90117 4.77487 +TCONS_00000275 1279 1279 179.181 139.808 +TCONS_00000276 1258 1258 49.6131 37.9747 +TCONS_00000277 1182 1182 1375.99 979.275 +TCONS_00000278 1161 1161 381.509 265.852 +TCONS_00000279 1126 1126 0 0 +TCONS_00000280 726 726 2.65814 1.36425 +TCONS_00000281 2663 2663 0 0 +TCONS_00000282 1738 1738 14.6313 16.1639 +TCONS_00000283 1202 1202 0 0 +TCONS_00000284 1077 1077 0 0 +TCONS_00000285 1041 1041 0 0 +TCONS_00000286 1194 1194 25.9358 18.6783 +TCONS_00000287 5643 5643 599.416 2316.94 +TCONS_00000288 5627 5627 0.00672731 0.0259271 +TCONS_00000290 837 837 10.4083 4.86897 +TCONS_00000291 957 957 0 0 +TCONS_00000292 660 660 0 0 +TCONS_00000293 467 467 2.61533 0.539363 +TCONS_00000295 934 934 0 0 +TCONS_00000296 3003 3003 13633.7 27253.9 +TCONS_00000297 3144 3144 138.338 290.33 +TCONS_00000298 4676 4676 2544.62 8096.26 +TCONS_00000299 4531 4531 104.294 321.145 +TCONS_00000300 1588 1588 458.299 457.705 +TCONS_00000301 3684 3684 0 0 +TCONS_00000302 3593 3593 0 0 +TCONS_00000303 2359 2359 4.79535e-5 7.40283e-5 +TCONS_00000304 2151 2151 0.976706 1.36417 +TCONS_00000305 3674 3674 1667.79 4125.06 +TCONS_00000306 3574 3574 96.4203 231.667 +TCONS_00000307 3561 3561 0 0 +TCONS_00000308 16326 16326 0.0121737 0.138993 +TCONS_00000309 16251 16251 270.289 3071.7 +TCONS_00000310 13946 13946 89.4549 870.844 +TCONS_00000311 4062 4062 0 0 +TCONS_00000312 5671 5671 31.7774 123.459 +TCONS_00000313 4219 4219 0 0 +TCONS_00000314 152 152 6.34805 0.682124 +TCONS_00000315 1574 1574 0 0 +TCONS_00000316 3832 3832 0 0 +TCONS_00000317 4049 4049 0 0 +TCONS_00000318 897 897 0 0 +TCONS_00000319 1018 1018 0 0 +TCONS_00000320 1783 1783 0 0 +TCONS_00000321 1606 1606 0 0 +TCONS_00000325 1855 1855 0 0 +TCONS_00000326 1863 1863 0 0 +TCONS_00000330 1863 1863 0 0 +TCONS_00000331 1557 1557 0 0 +TCONS_00000333 2804 2804 21.3019 39.5861 +TCONS_00000334 2810 2810 49.7944 92.746 +TCONS_00000335 2699 2699 0 0 +TCONS_00000339 2700 2700 40.5337 72.3453 +TCONS_00000340 7456 7456 0 0 +TCONS_00000341 7955 7955 6.04786 33.2618 +TCONS_00000342 2129 2129 0 0 +TCONS_00000343 2020 2020 101.3 132.105 +TCONS_00000344 6272 6272 414.045 1784.53 +TCONS_00000345 2301 2301 37.9706 57.0603 +TCONS_00000347 4052 4052 2.66983 7.31693 +TCONS_00000348 3905 3905 0 0 +TCONS_00000349 3833 3833 0 0 +TCONS_00000350 6021 6021 4.56321 18.8577 +TCONS_00000351 3842 3842 35.4038 91.7715 +TCONS_00000352 3643 3643 0 0 +TCONS_00000353 3653 3653 246.871 606.938 +TCONS_00000354 3393 3393 320.98 730.14 +TCONS_00000355 4528 4528 22.3355 68.7285 +TCONS_00000356 2015 2015 0 0 +TCONS_00000357 1942 1942 18.7315 23.3949 +TCONS_00000358 1879 1879 94.5342 113.859 +TCONS_00000359 1911 1911 550.526 675.52 +TCONS_00000360 1984 1984 191.231 244.518 +TCONS_00000361 5090 5090 2.35258 8.17379 +TCONS_00000362 3506 3506 1.41354 3.32833 +TCONS_00000365 1378 1378 0 0 +TCONS_00000367 2419 2419 1842.31 2922.22 +TCONS_00000368 899 899 0 0 +TCONS_00000369 753 753 8.35087 3.41062 +TCONS_00000371 922 922 0 0 +TCONS_00000372 2314 2314 28.552 43.1689 +TCONS_00000373 6023 6023 345.499 1428.28 +TCONS_00000374 5838 5838 66.7003 267.013 +TCONS_00000375 2927 2927 1.60521 3.12261 +TCONS_00000376 1462 1462 0 0 +TCONS_00000377 1759 1759 382.772 428.548 +TCONS_00000379 1853 1853 465.705 552.346 +TCONS_00000380 2770 2770 285.969 524.553 +TCONS_00000381 4120 4120 2313.48 6451.53 +TCONS_00000382 3070 3070 7.2182 14.7712 +TCONS_00000383 1741 1741 8.22425 9.10315 +TCONS_00000384 1518 1518 0 0 +TCONS_00000385 3493 3493 144.296 338.433 +TCONS_00000386 3349 3349 2662.49 5973.62 +TCONS_00000388 1524 1524 14.2942 13.6289 +TCONS_00000389 2792 2792 511.263 945.762 +TCONS_00000390 12227 12227 408.203 3477.8 +TCONS_00000391 11900 11900 178.297 1477.83 +TCONS_00000393 3059 3059 0 0 +TCONS_00000395 2532 2532 0 0 +TCONS_00000396 2406 2406 0 0 +TCONS_00000397 2535 2535 0 0 +TCONS_00000398 903 903 0 0 +TCONS_00000399 1097 1097 0 0 +TCONS_00000401 2128 2128 1.48301 2.04722 +TCONS_00000402 1498 1498 533.851 499.193 +TCONS_00000403 3583 3583 1671.33 4026.3 +TCONS_00000404 3580 3580 1154.33 2778.37 +TCONS_00000405 3633 3633 1770.54 4327.87 +TCONS_00000406 1342 1342 824.687 680.201 +TCONS_00000407 2079 2079 3243.35 4364.93 +TCONS_00000408 2003 2003 109.169 141.055 +TCONS_00000409 2001 2001 0 0 +TCONS_00000410 2415 2415 0.430813 0.682124 +TCONS_00000411 1397 1397 0 0 +TCONS_00000412 1586 1586 0 0 +TCONS_00000413 2635 2635 8.0772 14.0452 +TCONS_00000414 1403 1403 0 0 +TCONS_00000415 1748 1748 2.11816 2.355 +TCONS_00000416 2736 2736 0 0 +TCONS_00000417 2413 2413 2.28847 3.62018 +TCONS_00000418 2026 2026 0.0781924 0.102302 +TCONS_00000419 1668 1668 0 0 +TCONS_00000420 6656 6656 115.594 529.588 +TCONS_00000421 2614 2614 4.96147 8.55368 +TCONS_00000422 6137 6137 13.4781 56.8043 +TCONS_00000423 2424 2424 52.98 84.2224 +TCONS_00000424 3847 3847 0 0 +TCONS_00000425 2600 2600 0 0 +TCONS_00000427 2455 2455 1.11079e-5 1.92781e-5 +TCONS_00000428 2086 2086 0.925111 1.36423 +TCONS_00000429 3186 3186 0.605715 1.36425 +TCONS_00000430 1551 1551 0 0 +TCONS_00000431 2265 2265 0 0 +TCONS_00000432 2347 2347 0 0 +TCONS_00000433 3667 3667 16.8283 41.5392 +TCONS_00000434 4493 4493 9.33472 28.4928 +TCONS_00000435 4260 4260 244.544 706.154 +TCONS_00000436 4245 4245 0.0934533 0.268868 +TCONS_00000437 2011 2011 9.2629 12.0208 +TCONS_00000438 4599 4599 0 0 +TCONS_00000439 3481 3481 0 0 +TCONS_00000440 3691 3691 515.524 1281.28 +TCONS_00000441 3075 3075 0 0 +TCONS_00000442 2261 2261 21.1525 31.1888 +TCONS_00000443 1859 1859 8.02307 9.54973 +TCONS_00000444 1943 1943 0 0 +TCONS_00000445 1884 1884 0 0 +TCONS_00000446 1111 1111 0 0 +TCONS_00000447 5055 5055 0 0 +TCONS_00000448 4093 4093 1.41447 4.09274 +TCONS_00000449 2259 2259 0 0 +TCONS_00000450 2253 2253 0 0 +TCONS_00000451 6052 6052 0 0 +TCONS_00000452 2272 2272 1224.35 1814.79 +TCONS_00000453 1884 1884 197.908 239.065 +TCONS_00000454 1642 1642 110.23 114.295 +TCONS_00000455 2254 2254 64.2302 94.3878 +TCONS_00000456 1611 1611 0 0 +TCONS_00000457 1740 1740 153.917 170.257 +TCONS_00000458 2298 2298 55.7969 83.7305 +TCONS_00000459 2589 2589 1392.15 2375.48 +TCONS_00000460 2025 2025 6539.46 8551.23 +TCONS_00000461 2054 2054 5.59896 7.43618 +TCONS_00000462 2088 2088 37.2721 50.3983 +TCONS_00000463 2021 2021 550.382 718.143 +TCONS_00000464 1983 1983 0 0 +TCONS_00000465 6506 6506 96.4793 431.784 +TCONS_00000466 2793 2793 0 0 +TCONS_00000467 2581 2581 0 0 +TCONS_00000468 1893 1893 46.0621 55.9342 +TCONS_00000469 2719 2719 0 0 +TCONS_00000470 2971 2971 0 0 +TCONS_00000471 3743 3743 0 0 +TCONS_00000472 4475 4475 0.00147721 0.00467321 +TCONS_00000473 4419 4419 1.09027 3.40595 +TCONS_00000474 2908 2908 0 0 +TCONS_00000476 2581 2581 0.802173 1.36425 +TCONS_00000477 957 957 291.3 160.981 +TCONS_00000478 1078 1078 0 0 +TCONS_00000479 787 787 0 0 +TCONS_00000480 2659 2659 2480.6 4355.52 +TCONS_00000481 1658 1658 1107.44 1160.81 +TCONS_00000482 2437 2437 5.97272 9.54973 +TCONS_00000483 105 105 18756.5 8.18549 +TCONS_00000484 3765 3765 190.433 483.261 +TCONS_00000485 4294 4294 525.055 1528.79 +TCONS_00000486 3729 3729 7.14582 17.9521 +TCONS_00000487 3555 3555 0.0949508 0.226861 +TCONS_00000488 2595 2595 92.4958 158.222 +TCONS_00000489 2554 2554 0 0 +TCONS_00000490 2430 2430 10.1188 16.1288 +TCONS_00000491 2314 2314 0 0 +TCONS_00000492 2557 2557 18.3927 30.9683 +TCONS_00000493 4012 4012 23.3348 63.2913 +TCONS_00000494 987 987 257.995 148.047 +TCONS_00000495 1001 1001 0 0 +TCONS_00000498 1100 1100 12.0618 7.88506 +TCONS_00000499 1036 1036 590.158 359.098 +TCONS_00000501 1512 1512 80.8054 76.3594 +TCONS_00000502 2293 2293 621.614 930.614 +TCONS_00000503 2167 2167 0 0 +TCONS_00000504 2094 2094 8363.04 11343.7 +TCONS_00000505 2302 2302 0 0 +TCONS_00000506 2343 2343 54.1834 83.0328 +TCONS_00000507 8992 8992 4.57863 28.5379 +TCONS_00000508 8704 8704 232.591 1402.35 +TCONS_00000509 8368 8368 0 0 +TCONS_00000510 2160 2160 19.1081 26.8101 +TCONS_00000511 1844 1844 0 0 +TCONS_00000512 4996 4996 0 0 +TCONS_00000519 4032 4032 93.8993 256.012 +TCONS_00000520 4868 4868 0 0 +TCONS_00000521 4865 4865 117.538 389.677 +TCONS_00000522 4629 4629 140.913 443.662 +TCONS_00000523 3565 3565 12.8095 30.6956 +TCONS_00000524 3035 3035 1790.32 3619.38 +TCONS_00000525 3107 3107 614.572 1273.72 +TCONS_00000526 887 887 112.74 56.7245 +TCONS_00000527 2815 2815 17.5422 32.7357 +TCONS_00000528 2178 2178 0 0 +TCONS_00000529 1779 1779 0 0 +TCONS_00000530 1625 1625 0 0 +TCONS_00000531 607 607 53812.7 16423.8 +TCONS_00000532 604 604 7163.62 2171.16 +TCONS_00000533 594 594 64834.9 19191.9 +TCONS_00000534 1975 1975 68.5918 87.2686 +TCONS_00000535 4942 4942 1163.53 3920.82 +TCONS_00000536 1620 1620 1365.94 1395.07 +TCONS_00000537 1576 1576 163.823 162.221 +TCONS_00000538 1686 1686 0 0 +TCONS_00000539 1728 1728 91.5879 100.534 +TCONS_00000540 1622 1622 198.705 203.224 +TCONS_00000541 1590 1590 457.438 457.492 +TCONS_00000542 2412 2412 1737.21 2746.91 +TCONS_00000544 2799 2799 0 0 +TCONS_00000545 2699 2699 7.37064e-5 1.315e-4 +TCONS_00000546 2512 2512 0.82578 1.36412 +TCONS_00000547 1814 1814 4.66016 5.39867 +TCONS_00000548 1732 1732 186.409 205.143 +TCONS_00000549 5425 5425 1779.49 6604.05 +TCONS_00000550 5535 5535 93.1394 352.903 +TCONS_00000551 2736 2736 9.56238 17.3105 +TCONS_00000552 1697 1697 232.342 249.944 +TCONS_00000553 1413 1413 104.904 91.7901 +TCONS_00000554 1269 1269 59.0695 45.6721 +TCONS_00000555 1271 1271 102.913 79.7173 +TCONS_00000556 1097 1097 21.1384 13.7738 +TCONS_00000557 3953 3953 0.244094 0.682124 +TCONS_00000558 3933 3933 766.825 2037.04 +TCONS_00000559 3969 3969 465.686 1248.93 +TCONS_00000560 2393 2393 30.0273 47.0764 +TCONS_00000561 2510 2510 140.06 231.169 +TCONS_00000562 1489 1489 148.967 138.348 +TCONS_00003803 842 842 389.73 183.692 +TCONS_00003804 2411 2411 0 0 +TCONS_00003807 1745 1745 6.37832 7.07798 +TCONS_00003808 1745 1745 9.41511 10.4479 +TCONS_00003809 1768 1768 72.8587 82.0354 +TCONS_00003810 1636 1636 6.27984 6.4848 +TCONS_00003812 3181 3181 28.3241 60.1845 +TCONS_00003813 3517 3517 9.29883 21.9674 +TCONS_00003814 1189 1189 0 0 +TCONS_00003816 1134 1134 0 0 +TCONS_00003817 1097 1097 108.701 70.8297 +TCONS_00003818 717 717 185.924 71.2023 +TCONS_00003819 1577 1577 70.0438 69.4085 +TCONS_00003820 1148 1148 5.69836 3.9185 +TCONS_00003821 1022 1022 0 0 +TCONS_00003822 806 806 55.2067 24.6157 +TCONS_00003824 1129 1129 0 0 +TCONS_00003825 2373 2373 16.5374 25.6933 +TCONS_00003826 1390 1390 23.2476 19.9635 +TCONS_00003827 937 937 0 0 +TCONS_00003828 4272 4272 5.47035 15.8428 +TCONS_00003829 4295 4295 42.5403 123.893 +TCONS_00003830 4812 4812 28.5482 93.5772 +TCONS_00003831 78 78 0 0 +TCONS_00003833 78 78 0 0 +TCONS_00003835 683 683 59.5078 21.3591 +TCONS_00003836 1317 1317 60.7083 48.9992 +TCONS_00003837 1316 1316 44.831 36.1526 +TCONS_00003838 1704 1704 10.0989 10.914 +TCONS_00003839 496 496 6.01699 1.36425 +TCONS_00003840 436 436 0 0 +TCONS_00003841 4282 4282 32.3187 93.8273 +TCONS_00003842 2799 2799 295.524 548.139 +TCONS_00003843 2814 2814 1082.34 2019 +TCONS_00003844 896 896 73.4242 37.4101 +TCONS_00003845 1214 1214 32.8138 24.0956 +TCONS_00003846 3040 3040 4.26944 8.64636 +TCONS_00003847 962 962 44.7182 24.8707 +TCONS_00003848 1040 1040 9.52865 5.82491 +TCONS_00003849 1870 1870 22.4842 26.9374 +TCONS_00003850 1750 1750 23.4301 26.083 +TCONS_00003851 1741 1741 60.5935 67.0689 +TCONS_00003852 2741 2741 0 0 +TCONS_00003853 1979 1979 61.1541 77.9786 +TCONS_00003854 2373 2373 11.5539 17.9508 +TCONS_00003855 2276 2276 18.3462 27.2455 +TCONS_00003856 2704 2704 18.8394 33.6781 +TCONS_00003857 2104 2104 0 0 +TCONS_00003858 3532 3532 0 0 +TCONS_00003859 1062 1062 1.5483e-4 9.70561e-5 +TCONS_00003860 1178 1178 0 0 +TCONS_00003861 1199 1199 0 0 +TCONS_00003862 988 988 9.49778 5.45689 +TCONS_00003863 1067 1067 5.41031 3.41062 +TCONS_00003864 1700 1700 0 0 +TCONS_00003865 3539 3539 62.2363 147.994 +TCONS_00003866 2021 2021 7345.21 9584.09 +TCONS_00003867 2137 2137 450.58 624.87 +TCONS_00003869 2153 2153 17.8042 24.8925 +TCONS_00003870 771 771 95.7614 40.3289 +TCONS_00003871 1036 1036 33.631 20.4637 +TCONS_00003872 2262 2262 0 0 +TCONS_00003873 2379 2379 21.3963 33.3331 +TCONS_00003874 2306 2306 7.1809 10.8165 +TCONS_00003875 2258 2258 1248.12 1837.67 +TCONS_00003876 2387 2387 62.3358 97.4648 +TCONS_00003877 2127 2127 107.22 147.936 +TCONS_00003878 2380 2380 53.1632 82.86 +TCONS_00003879 3517 3517 15.8809 37.5168 +TCONS_00003880 3211 3211 86.9683 186.639 +TCONS_00003881 5325 5325 92.8157 337.897 +TCONS_00003882 3759 3759 688.41 1744.06 +TCONS_00003883 1946 1946 115.455 144.525 +TCONS_00003884 2880 2880 128.912 246.488 +TCONS_00003885 2135 2135 1907.14 2642.15 +TCONS_00003886 2608 2608 30.905 53.1498 +TCONS_00003887 2510 2510 43.6614 72.0632 +TCONS_00003888 1832 1832 0 0 +TCONS_00003891 1918 1918 95.5243 117.685 +TCONS_00003892 2069 2069 0 0 +TCONS_00003893 2242 2242 52.6869 76.9776 +TCONS_00003894 1570 1570 0 0 +TCONS_00003895 1104 1104 465.674 305.738 +TCONS_00003896 2483 2483 8.22763 13.4226 +TCONS_00003897 2182 2182 104.362 148.051 +TCONS_00003898 2193 2193 50.4304 71.9339 +TCONS_00003899 2923 2923 979.669 1902.97 +TCONS_00003900 4402 4402 20.0274 59.8421 +TCONS_00003901 2005 2005 106.991 138.393 +TCONS_00003902 1987 1987 3577.65 4582.16 +TCONS_00003903 1996 1996 4244.01 5462.61 +TCONS_00003904 2299 2299 5256.21 7891.33 +TCONS_00003905 2728 2728 28.8363 52.0383 +TCONS_00003906 781 781 2652.13 1135.67 +TCONS_00003907 813 813 609.763 274.9 +TCONS_00003908 909 909 937.029 486.034 +TCONS_00003909 990 990 1093.8 629.986 +TCONS_00003910 2914 2914 4.67165 9.04479 +TCONS_00003911 4362 4362 125.66 371.922 +TCONS_00003912 2868 2868 35.7335 68.0216 +TCONS_00003913 5269 5269 868.503 3127.42 +TCONS_00003914 3115 3115 242.996 504.992 +TCONS_00003915 3129 3129 42.2777 88.2797 +TCONS_00003916 3839 3839 152.808 395.774 +TCONS_00003917 732 732 7464.7 2937.88 +TCONS_00003918 1148 1148 40.6891 27.98 +TCONS_00003919 1456 1456 44.2621 40.0744 +TCONS_00003920 1475 1475 0.00393203 0.00361283 +TCONS_00003921 2016 2016 1.70114 2.21365 +TCONS_00003922 1116 1116 241.04 160.299 +TCONS_00003923 1302 1302 6225.88 4959.05 +TCONS_00003924 1497 1497 4.94176 4.61746 +TCONS_00003925 2970 2970 394.015 778.451 +TCONS_00003926 1629 1629 118.663 121.949 +TCONS_00003927 2053 2053 108.116 143.516 +TCONS_00003928 1877 1877 84.5745 101.744 +TCONS_00003929 2452 2452 0 0 +TCONS_00003932 2431 2431 0 0 +TCONS_00003934 2499 2499 174.907 287.324 +TCONS_00003935 262 262 524.22 32.17 +TCONS_00003936 335 335 279.885 31.6057 +TCONS_00003937 2236 2236 3.31772 4.83326 +TCONS_00003938 5141 5141 147.04 516.177 +TCONS_00003939 6420 6420 23.518 103.823 +TCONS_00003940 6002 6002 46.6985 192.357 +TCONS_00003941 5915 5915 250.313 1015.67 +TCONS_00003942 1231 1231 431.605 322.119 +TCONS_00003943 2279 2279 26.0519 38.7443 +TCONS_00003944 1777 1777 31.0126 35.1161 +TCONS_00003945 1557 1557 335.417 327.632 +TCONS_00003946 1504 1504 57.5165 54.0265 +TCONS_00003947 2595 2595 161.524 276.3 +TCONS_00003948 2625 2625 862.766 1494.13 +TCONS_00003949 1966 1966 191.884 242.911 +TCONS_00003950 1920 1920 76.5179 94.3778 +TCONS_00003951 1277 1277 129.511 100.869 +TCONS_00003952 1108 1108 22.4483 14.8019 +TCONS_00003953 1120 1120 1.1373 0.759554 +TCONS_00003954 1150 1150 113.015 77.8747 +TCONS_00003955 887 887 142.455 71.6753 +TCONS_00003956 704 704 0 0 +TCONS_00003957 734 734 26.4992 10.4668 +TCONS_00003958 657 657 0 0 +TCONS_00003959 2149 2149 138.858 193.747 +TCONS_00003961 3841 3841 1419.51 3678.55 +TCONS_00003962 1430 1430 476.471 422.635 +TCONS_00003963 3021 3021 4.53257 9.11837 +TCONS_00003964 3127 3127 508.78 1061.66 +TCONS_00003965 3228 3228 618.528 1334.83 +TCONS_00003966 3152 3152 0 0 +TCONS_00003967 3646 3646 1.69946 4.16976 +TCONS_00003968 1431 1431 55.5119 49.2788 +TCONS_00003969 3127 3127 17124.9 35734.1 +TCONS_00003970 2981 2981 5.09328 10.1023 +TCONS_00003971 1118 1118 0 0 +TCONS_00003972 958 958 24.6549 13.6425 +TCONS_00003973 2097 2097 0 0 +TCONS_00003974 2755 2755 0 0 +TCONS_00003975 4710 4710 0 0 +TCONS_00003976 2572 2572 0 0 +TCONS_00003977 2145 2145 0 0 +TCONS_00003978 1954 1954 0 0 +TCONS_00003979 1253 1253 23.9242 18.2274 +TCONS_00003980 2347 2347 138.287 212.307 +TCONS_00003981 2216 2216 56.9174 82.1125 +TCONS_00003982 2266 2266 68.2012 100.802 +TCONS_00003983 728 728 2117.66 827.458 +TCONS_00003984 1641 1641 19.3263 20.0254 +TCONS_00003985 1826 1826 0 0 +TCONS_00003986 2248 2248 116.381 170.531 +TCONS_00003987 1345 1345 56.9632 47.104 +TCONS_00003988 1530 1530 19.6493 18.8182 +TCONS_00003989 2072 2072 14.5103 19.4563 +TCONS_00003990 2012 2012 758.764 985.214 +TCONS_00003991 2642 2642 416.203 725.78 +TCONS_00003993 1305 1305 0 0 +TCONS_00003995 2209 2209 9.40505 13.5217 +TCONS_00003996 2303 2303 0 0 +TCONS_00003997 3322 3322 13.5036 30.0391 +TCONS_00003998 2754 2754 0 0 +TCONS_00003999 2902 2902 5.07563 9.78387 +TCONS_00004000 2222 2222 0 0 +TCONS_00004001 620 620 15.1876 4.77487 +TCONS_00004002 6472 6472 142.899 636.098 +TCONS_00004003 7432 7432 72.663 372.763 +TCONS_00004004 1698 1698 336.731 362.48 +TCONS_00004005 2041 2041 74.2892 97.9835 +TCONS_00004006 5724 5724 19.4689 76.3684 +TCONS_00004007 3322 3322 47.5041 105.674 +TCONS_00004008 6356 6356 198.903 869.081 +TCONS_00004009 2648 2648 1340.01 2342.41 +TCONS_00004010 6458 6458 93.4593 415.097 +TCONS_00004011 5892 5892 287.792 1163.07 +TCONS_00004012 2208 2208 247.973 356.338 +TCONS_00004013 1660 1660 1286.24 1350.04 +TCONS_00004014 2505 2505 4.8963 8.06402 +TCONS_00004015 847 847 0 0 +TCONS_00004016 5002 5002 92.6298 316.07 +TCONS_00004017 4370 4370 8.27673 24.5438 +TCONS_00004018 3630 3630 4.21795 10.3013 +TCONS_00004020 2773 2773 0 0 +TCONS_00004021 1349 1349 3.74518 3.10756 +TCONS_00004022 6343 6343 3.15076 13.7379 +TCONS_00004023 7735 7735 0 0 +TCONS_00004024 9646 9646 0.291399 1.95097 +TCONS_00004025 3491 3491 0 0 +TCONS_00004026 2198 2198 0 0 +TCONS_00004027 2084 2084 8967.88 12100.8 +TCONS_00004028 2067 2067 1804.95 2413.81 +TCONS_00004029 4813 4813 2379.46 7801.24 +TCONS_00004030 4920 4920 278.354 933.657 +TCONS_00004031 2710 2710 312.924 560.724 +TCONS_00004032 2632 2632 161.414 280.335 +TCONS_00004033 1413 1413 1138.88 996.511 +TCONS_00004034 1429 1429 20.3048 17.9962 +TCONS_00004035 1624 1624 55.0294 56.3586 +TCONS_00004036 1294 1294 896.376 708.914 +TCONS_00004037 1804 1804 29.4384 33.8954 +TCONS_00004038 1877 1877 0 0 +TCONS_00004039 1802 1802 261.662 300.908 +TCONS_00004040 1200 1200 0.804087 0.682124 +TCONS_00004041 4259 4259 0.47256 1.36425 +TCONS_00004042 1066 1066 2.14592 1.35125 +TCONS_00004043 1559 1559 0 0 +TCONS_00004044 1448 1448 0 0 +TCONS_00004046 1615 1615 2.23269 2.27242 +TCONS_00004048 1480 1480 2.3478 2.16551 +TCONS_00004049 1642 1642 0 0 +TCONS_00004051 894 894 4.71635 2.39634 +TCONS_00004052 3694 3694 0 0 +TCONS_00004053 5038 5038 1.78897 6.1498100000000004 +TCONS_00004054 4725 4725 0 0 +TCONS_00004055 4698 4698 0 0 +TCONS_00004056 4715 4715 26.1927 84.0599 +TCONS_00004058 4643 4643 0 0 +TCONS_00004059 4783 4783 0.0107549 0.0350327 +TCONS_00004060 4761 4761 12.1928 39.5266 +TCONS_00004061 5221 5221 6.2636 22.3423 +TCONS_00004062 4528 4528 0 0 +TCONS_00004063 1548 1548 0 0 +TCONS_00004064 2832 2832 351.868 660.855 +TCONS_00004065 2864 2864 8.67754 16.4939 +TCONS_00004066 6318 6318 72.8236 316.237 +TCONS_00004067 3475 3475 655.216 1528.42 +TCONS_00004068 4486 4486 339.947 1035.96 +TCONS_00004069 1357 1357 0 0 +TCONS_00004070 3293 3293 1423.69 3137.86 +TCONS_00004071 3137 3137 31.778 66.535 +TCONS_00004072 3219 3219 55.3143 119.021 +TCONS_00004074 643 643 0 0 +TCONS_00004075 647 647 0 0 +TCONS_00004076 1883 1883 1.13004 1.36425 +TCONS_00004077 3128 3128 2611.2 5450.57 +TCONS_00004078 2156 2156 107.861 151.032 +TCONS_00004079 6306 6306 2150.1 9318.59 +TCONS_00004080 8192 8192 0 0 +TCONS_00004081 8007 8007 248.438 1375.48 +TCONS_00004082 2592 2592 98.9852 169.113 +TCONS_00004083 584 584 0 0 +TCONS_00004084 2710 2710 8.55394 15.3277 +TCONS_00004085 2267 2267 199.782 295.42 +TCONS_00004086 1812 1812 18801.7 21754.7 +TCONS_00004087 1801 1801 1410.02 1620.51 +TCONS_00004088 1753 1753 0 0 +TCONS_00004089 1683 1683 3393.8 3617.33 +TCONS_00004090 1644 1644 6660.58 6915.63 +TCONS_00004091 1453 1453 27224.7 24591.2 +TCONS_00004092 1448 1448 0 0 +TCONS_00004093 1276 1276 194.429 151.293 +TCONS_00004094 1539 1539 1.25394 1.36425 +TCONS_00004095 2012 2012 13.3987 17.3974 +TCONS_00004096 1942 1942 0 0 +TCONS_00004097 2436 2436 96.8034 154.71 +TCONS_00004098 2398 2398 0 0 +TCONS_00004099 2411 2411 111.715 176.567 +TCONS_00004100 920 920 8.86318 4.66622 +TCONS_00004101 1279 1279 0 0 +TCONS_00004102 1153 1153 20.7286 14.3274 +TCONS_00004103 958 958 53.0161 29.3357 +TCONS_00004104 2913 2913 1.6584 3.20966 +TCONS_00004105 2396 2396 1.86144 2.92229 +TCONS_00004106 3934 3934 82.404 218.962 +TCONS_00004107 1822 1822 0 0 +TCONS_00004108 951 951 75.8761 41.6096 +TCONS_00004109 2235 2235 743.025 1081.91 +TCONS_00004110 5191 5191 2912.17 10325.9 +TCONS_00004111 5161 5161 1348.52 4752.97 +TCONS_00004112 5134 5134 17.8963 62.7354 +TCONS_00004113 2995 2995 86.0232 171.475 +TCONS_00004114 2961 2961 435.606 857.849 +TCONS_00004115 1345 1345 6.32133 5.22724 +TCONS_00004116 1500 1500 645.93 604.91 +TCONS_00004117 1440 1440 437.5 391.16 +TCONS_00004118 1383 1383 14.4525 12.3393 +TCONS_00004119 2036 2036 824.41 1084.44 +TCONS_00004120 3391 3391 283.915 645.427 +TCONS_00004121 7931 7931 0.562232 3.0826 +TCONS_00004122 4405 4405 1.19485 3.57277 +TCONS_00004123 3250 3250 6.35267 13.8084 +TCONS_00004124 2267 2267 0 0 +TCONS_00004125 2262 2262 0 0 +TCONS_00004126 2238 2238 0 0 +TCONS_00004127 2316 2316 0 0 +TCONS_00004128 2443 2443 14.0413 22.5101 +TCONS_00004129 720 720 0 0 +TCONS_00004130 2190 2190 0 0 +TCONS_00004132 828 828 4056.21 1871.68 +TCONS_00004133 1273 1273 4682.54 3633.75 +TCONS_00004134 2805 2805 1459.04 2712.41 +TCONS_00004135 2730 2730 0 0 +TCONS_00004136 2689 2689 39.1828 69.6293 +TCONS_00004137 4020 4020 106.801 290.281 +TCONS_00004138 8724 8724 650.018 3928.31 +TCONS_00004139 1534 1534 95.0546 91.3029 +TCONS_00004140 1543 1543 0 0 +TCONS_00004141 1183 1183 0 0 +TCONS_00004142 1830 1830 170.964 199.99 +TCONS_00004143 1151 1151 1773.42 1223.26 +TCONS_00004144 7188 7188 388.25 1924.76 +TCONS_00004145 7105 7105 242.714 1189.02 +TCONS_00004146 1411 1411 133.884 116.958 +TCONS_00004148 852 852 22.8136 10.914 +TCONS_00004149 697 697 0 0 +TCONS_00004150 2339 2339 749.632 1146.65 +TCONS_00004151 2534 2534 94.9078 158.256 +TCONS_00004152 1368 1368 279.897 236.003 +TCONS_00004153 1805 1805 309.701 356.81 +TCONS_00004154 1262 1262 0 0 +TCONS_00004155 1222 1222 0 0 +TCONS_00004156 252 252 149.845 8.13791 +TCONS_00004158 1002 1002 1297.86 758.522 +TCONS_00004160 1840 1840 0 0 +TCONS_00004162 1720 1720 0 0 +TCONS_00004163 1734 1734 0 0 +TCONS_00004164 1855 1855 0 0 +TCONS_00004165 1007 1007 203.021 119.372 +TCONS_00004169 2100 2100 0 0 +TCONS_00004170 2164 2164 0 0 +TCONS_00004172 1844 1844 0 0 +TCONS_00004173 2100 2100 0 0 +TCONS_00004175 1906 1906 0 0 +TCONS_00004176 6978 6978 1.68656 8.11082 +TCONS_00004177 7099 7099 0 0 +TCONS_00004178 3105 3105 0.374731 0.776114 +TCONS_00004179 4316 4316 26.006 76.1253 +TCONS_00004180 1987 1987 165.238 211.632 +TCONS_00004181 1537 1537 15.4045 14.8291 +TCONS_00004182 2045 2045 14.5948 19.2911 +TCONS_00004184 1904 1904 31.8842 38.9656 +TCONS_00004185 1798 1798 0 0 +TCONS_00004186 2196 2196 34.7737 49.675 +TCONS_00004187 538 538 14920.7 3826.03 +TCONS_00004188 2732 2732 39.6268 71.623 +TCONS_00004189 2749 2749 503.537 916.164 +TCONS_00004190 2564 2564 0 0 +TCONS_00004191 2770 2770 62.8375 115.263 +TCONS_00004192 2745 2745 0 0 +TCONS_00004193 1894 1894 3.18681 3.87206 +TCONS_00004194 1928 1928 11.3755 14.0949 +TCONS_00004196 1166 1166 21.0158 14.7191 +TCONS_00004197 905 905 0 0 +TCONS_00004199 2892 2892 225.907 433.865 +TCONS_00004200 2877 2877 19.5866 37.4094 +TCONS_00004201 2904 2904 0 0 +TCONS_00004202 2907 2907 55.4118 107.009 +TCONS_00004203 2415 2415 302.529 479.006 +TCONS_00004204 892 892 7.60353 3.85255 +TCONS_00004205 1700 1700 30.7694 33.1657 +TCONS_00004206 3946 3946 578.063 1540.92 +TCONS_00004207 1631 1631 0 0 +TCONS_00004208 2008 2008 123.074 159.457 +TCONS_00004209 1984 1984 44.2742 56.6113 +TCONS_00004210 3029 3029 12.9302 26.0854 +TCONS_00004211 1559 1559 176.423 172.577 +TCONS_00004212 2474 2474 18.643 30.2959 +TCONS_00004213 3055 3055 44.6479 90.8932 +TCONS_00004214 2975 2975 567.052 1122.32 +TCONS_00004215 2963 2963 0 0 +TCONS_00004216 3650 3650 0.350249 0.860354 +TCONS_00004217 2014 2014 0 0 +TCONS_00004219 5368 5368 21.5759 79.2035 +TCONS_00004220 574 574 41.8251 11.7894 +TCONS_00004221 1122 1122 22.1882 14.85 +TCONS_00004222 2482 2482 0.8366 1.36425 +TCONS_00004223 1160 1160 2175.15 1514.2 +TCONS_00004224 4268 4268 702.878 2033.63 +TCONS_00004225 1512 1512 648.398 612.722 +TCONS_00004226 1512 1512 211.661 200.015 +TCONS_00004227 2216 2216 1.83122 2.64183 +TCONS_00004228 2663 2663 104.738 184.199 +TCONS_00004229 3026 3026 41.7203 84.078 +TCONS_00004230 2696 2696 141.752 252.6 +TCONS_00004231 1404 1404 171.552 149.015 +TCONS_00004232 2173 2173 62.523 88.2989 +TCONS_00004233 1966 1966 18.2709 23.1296 +TCONS_00004234 2746 2746 26.45 48.0685 +TCONS_00004235 1912 1912 76.915 94.4326 +TCONS_00004236 2029 2029 12.1416 15.9111 +TCONS_00004237 596 596 210.123 62.496 +TCONS_00004238 2015 2015 0 0 +TCONS_00004239 1171 1171 0 0 +TCONS_00004240 4170 4170 1.72622 4.87486 +TCONS_00004241 4395 4395 1.22414 3.65169 +TCONS_00004242 359 359 504.172 65.4839 +TCONS_00004243 1100 1100 867.572 567.15 +TCONS_00004244 1097 1097 198.784 129.528 +TCONS_00004245 1081 1081 5.12036 3.27851 +TCONS_00004246 1078 1078 0.916315 0.584764 +TCONS_00004247 1224 1224 236.528 175.357 +TCONS_00004248 3996 3996 187.73 507.059 +TCONS_00004249 3981 3981 196.045 527.438 +TCONS_00004250 3694 3694 0.0212982 0.0529795 +TCONS_00004251 1080 1080 26.9443 17.2331 +TCONS_00004252 1639 1639 0 0 +TCONS_00004253 1143 1143 5234.69 3581.15 +TCONS_00004254 4362 4362 3.363e-5 1.03703e-4 +TCONS_00004255 4014 4014 1.68266 4.77476 +TCONS_00004256 1625 1625 0 0 +TCONS_00004258 3950 3950 652.602 1741.46 +TCONS_00004259 4091 4091 166.087 459.755 +TCONS_00004260 2521 2521 0 0 +TCONS_00004261 3241 3241 204.973 444.232 +TCONS_00004262 2368 2368 0 0 +TCONS_00004263 3381 3381 328.008 743.345 +TCONS_00004264 5835 5835 374.131 1496.92 +TCONS_00004265 3402 3402 9.31627 21.2512 +TCONS_00004266 941 941 236.908 128.243 +TCONS_00004267 2535 2535 372.124 620.767 +TCONS_00004268 2916 2916 14.6598 28.4036 +TCONS_00004269 2888 2888 0 0 +TCONS_00004270 3481 3481 434.674 1015.8 +TCONS_00004271 3477 3477 98.0826 228.935 +TCONS_00004272 15880 15880 808.264 8973.52 +TCONS_00004273 3162 3162 6.85761 14.4793 +TCONS_00004274 3124 3124 179.439 374.051 +TCONS_00004275 2172 2172 0 0 +TCONS_00004276 5751 5751 5.36473 21.146 +TCONS_00004277 2675 2675 7.49306 13.2413 +TCONS_00004278 4237 4237 2011.2 5774.91 +TCONS_00004279 4234 4234 82.3087 236.165 +TCONS_00004280 4234 4234 229.103 657.355 +TCONS_00004281 4171 4171 9.32161 26.3309 +TCONS_00004282 2314 2314 9.92548 15.0067 +TCONS_00004283 2117 2117 0 0 +TCONS_00004284 1241 1241 12.6755 9.54973 +TCONS_00004285 1362 1362 1927.33 1616.91 +TCONS_00004286 1257 1257 1015.18 776.318 +TCONS_00004287 1032 1032 0 0 +TCONS_00004288 1575 1575 0 0 +TCONS_00004289 2084 2084 18.8245 25.4007 +TCONS_00004290 1629 1629 19793.9 20342 +TCONS_00004291 2049 2049 167.13 221.38 +TCONS_00004292 2093 2093 20.1265 27.2856 +TCONS_00004293 2232 2232 117.163 170.352 +TCONS_00004294 2973 2973 373.604 738.917 +TCONS_00004295 2401 2401 0 0 +TCONS_00004296 2281 2281 101.541 151.155 +TCONS_00004297 1715 1715 31.7863 34.5989 +TCONS_00004298 1045 1045 9.63659 5.92496 +TCONS_00004299 1249 1249 0 0 +TCONS_00004301 922 922 6.64325e-4 3.50689e-4 +TCONS_00004302 999 999 0 0 +TCONS_00004303 968 968 0 0 +TCONS_00004304 888 888 5.41459 2.72814 +TCONS_00004308 1452 1452 0 0 +TCONS_00004309 2467 2467 4.69349 8.18549 +TCONS_00004310 1607 1607 5042.8 5104.01 +TCONS_00004311 2350 2350 8507.96 13080 +TCONS_00004312 2456 2456 1374.97 2216.9 +TCONS_00004313 2126 2126 12796.8 17647.2 +TCONS_00004314 2135 2135 0 0 +TCONS_00004315 2073 2073 0 0 +TCONS_00004316 2015 2015 0 0 +TCONS_00004317 1812 1812 13.3569 15.4548 +TCONS_00004318 1671 1671 136.61 144.449 +TCONS_00004319 1978 1978 19.2894 24.5826 +TCONS_00004320 3776 3776 0 0 +TCONS_00004321 3773 3773 27.7696 70.628 +TCONS_00004322 3705 3705 49.9771 124.707 +TCONS_00004323 3834 3834 44.5145 115.136 +TCONS_00004324 3063 3063 100.372 204.902 +TCONS_00004325 3139 3139 117.394 245.959 +TCONS_00004326 4775 4775 172.133 559.726 +TCONS_00004327 4317 4317 31.4786 92.1672 +TCONS_00004328 3921 3921 788.321 2087.46 +TCONS_00004329 3797 3797 1967.7 5037.95 +TCONS_00004330 1860 1860 1467.83 1748.18 +TCONS_00004331 2544 2544 0 0 +TCONS_00004332 2537 2537 239.209 399.38 +TCONS_00004333 927 927 267.594 142.205 +TCONS_00004334 5160 5160 628.196 2213.68 +TCONS_00004335 4949 4949 48.9399 165.158 +TCONS_00004336 5786 5786 802.383 3182.59 +TCONS_00004337 5850 5850 216.424 868.219 +TCONS_00004338 6175 6175 313.871 1331.26 +TCONS_00004340 6283 6283 311.711 1345.9 +TCONS_00004342 1915 1915 0 0 +TCONS_00004343 2088 2088 84.9247 114.833 +TCONS_00004344 5241 5241 155.001 555.081 +TCONS_00004345 5087 5087 986.331 3424.81 +TCONS_00004346 5096 5096 1772 6164.14 +TCONS_00004347 5000 5000 17.8227 60.7891 +TCONS_00004348 5136 5136 3578.95 12551 +TCONS_00004349 2198 2198 272.719 389.97 +TCONS_00004350 2326 2326 0.448641 0.682124 +TCONS_00004351 2057 2057 611.143 812.978 +TCONS_00004352 3348 3348 0 0 +TCONS_00004353 3300 3300 2.46707 5.44969 +TCONS_00004354 3333 3333 0.00326853 0.00729636 +TCONS_00004355 3494 3494 0 0 +TCONS_00004356 3639 3639 56.5689 138.516 +TCONS_00004357 4462 4462 1140.54 3456.33 +TCONS_00004359 4264 4264 56.0565 162.029 +TCONS_00004360 4498 4498 0 0 +TCONS_00004361 2089 2089 2.14287 2.89905 +TCONS_00004362 2126 2126 190.394 262.56 +TCONS_00004363 2411 2411 176.613 279.139 +TCONS_00004364 3586 3586 185.294 446.773 +TCONS_00004365 14287 14287 5743.53 57297.8 +TCONS_00004366 14290 14290 1240.5 12377.9 +TCONS_00004367 846 846 322.826 153.071 +TCONS_00004368 3903 3903 0.0101707 0.0280627 +TCONS_00004369 3883 3883 1.48074 4.06468 +TCONS_00004370 510 510 0 0 +TCONS_00004371 8653 8653 478.317 2866.65 +TCONS_00004372 8587 8587 568.553 3380.92 +TCONS_00004373 3921 3921 0 0 +TCONS_00004374 2834 2834 0 0 +TCONS_00004375 1637 1637 0.283549 0.293004 +TCONS_00004376 2740 2740 289.799 525.433 +TCONS_00004377 2731 2731 1179.9 2131.75 +TCONS_00004378 2565 2565 2277.44 3847.46 +TCONS_00004379 2574 2574 509.044 863.207 +TCONS_00004380 2451 2451 0 0 +TCONS_00004381 2617 2617 0 0 +TCONS_00004382 2388 2388 89.2775 139.653 +TCONS_00004383 4314 4314 313.143 916.196 +TCONS_00004384 4492 4492 110.131 336.081 +TCONS_00004385 1586 1586 567.04 565.504 +TCONS_00004386 540 540 217.637 56.115 +TCONS_00004387 738 738 168.593 67.0681 +TCONS_00004388 646 646 13.0752 4.35108 +TCONS_00004389 2552 2552 59.8523 100.563 +TCONS_00004390 2791 2791 41.4315 76.613 +TCONS_00004391 4088 4088 91.3879 252.783 +TCONS_00004392 4129 4129 498.976 1394.65 +TCONS_00004394 1768 1768 0 0 +TCONS_00004395 697 697 0.195125 0.0719674 +TCONS_00004396 2041 2041 0 0 +TCONS_00004397 5192 5192 29.62 105.047 +TCONS_00004398 1287 1287 1229.48 966.267 +TCONS_00004399 1547 1547 71.3578 69.1972 +TCONS_00004400 1074 1074 142.83 90.7456 +TCONS_00004401 1607 1607 0 0 +TCONS_00004402 1631 1631 192.089 197.679 +TCONS_00004403 1553 1553 0 0 +TCONS_00004404 1566 1566 193.265 190.009 +TCONS_00004405 1676 1676 121.508 128.91 +TCONS_00004406 1824 1824 29.0902 33.9059 +TCONS_00004408 1244 1244 3.57145 2.6983 +TCONS_00004409 934 934 0 0 +TCONS_00004410 1607 1607 1594.15 1613.5 +TCONS_00004412 1394 1394 327.298 281.987 +TCONS_00004413 2160 2160 0 0 +TCONS_00004414 1411 1411 5.04991 4.41149 +TCONS_00004415 2054 2054 37.355 49.6126 +TCONS_00004416 2077 2077 124.816 167.802 +TCONS_00004418 953 953 0 0 +TCONS_00004419 1774 1774 0 0 +TCONS_00004420 2239 2239 205.454 299.74 +TCONS_00004421 1842 1842 1284.91 1513.96 +TCONS_00004422 2924 2924 962.225 1869.77 +TCONS_00004423 2686 2686 0 0 +TCONS_00004424 4859 4859 0 0 +TCONS_00004425 5799 5799 0 0 +TCONS_00004426 3940 3940 0 0 +TCONS_00004427 5094 5094 0 0 +TCONS_00004428 2703 2703 2.28441 4.08209 +TCONS_00004429 2798 2798 0 0 +TCONS_00004431 2725 2725 0.00591119 0.0106549 +TCONS_00004432 4461 4461 0.00134022 0.00422657 +TCONS_00004433 4548 4548 0 0 +TCONS_00004434 4417 4417 0.147425 0.460339 +TCONS_00004435 4424 4424 0.0695635 0.217558 +TCONS_00004436 686 686 0 0 +TCONS_00004439 2497 2497 40.3414 66.2127 +TCONS_00004440 2827 2827 12.8311 24.0531 +TCONS_00004441 2683 2683 241.43 428.007 +TCONS_00004442 2803 2803 6.05059 11.2398 +TCONS_00004443 1653 1653 14.842 15.5048
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/salmon_cond2_rep1.sf Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,1093 @@ +Name Length EffectiveLength TPM NumReads +TCONS_00000001 1652 1652 0 0 +TCONS_00000002 1488 1488 0 0 +TCONS_00000003 1595 1595 0 0 +TCONS_00000006 78 78 1377990 4.67384 +TCONS_00000007 2750 2750 329.487 589.154 +TCONS_00000008 4369 4369 358.067 1050.07 +TCONS_00000009 4272 4272 0.00971677 0.0278293 +TCONS_00000010 937 937 0 0 +TCONS_00000012 1584 1584 88354.2 85156.6 +TCONS_00000013 694 694 6801.86 2276.16 +TCONS_00000015 1023 1023 31724.9 17994.9 +TCONS_00000016 510 510 0 0 +TCONS_00000017 854 854 0 0 +TCONS_00000018 701 701 86.5869 29.4037 +TCONS_00000019 517 517 0 0 +TCONS_00000020 1543 1543 121.215 113.315 +TCONS_00000021 2682 2682 27.6282 48.0737 +TCONS_00000022 3043 3043 23.7597 47.4061 +TCONS_00000023 490 490 0 0 +TCONS_00000024 2554 2554 0 0 +TCONS_00000025 2121 2121 8.21721 11.0393 +TCONS_00000026 2560 2560 167.146 276.421 +TCONS_00000027 955 955 158.746 82.4125 +TCONS_00000028 2003 2003 234.098 294.967 +TCONS_00000029 1149 1149 184.96 121.388 +TCONS_00000030 2398 2398 9.52126 14.6556 +TCONS_00000031 2554 2554 12.1632 20.0637 +TCONS_00000032 2293 2293 4.25187e-4 6.2291e-4 +TCONS_00000033 662 662 1003.63 313.147 +TCONS_00000034 7319 7319 1882.49 9446.49 +TCONS_00000035 673 673 4.17578 1.33538 +TCONS_00000036 971 971 27.6915 14.6892 +TCONS_00000037 1616 1616 2.03063 2.00307 +TCONS_00000041 2259 2259 5.07399 7.31156 +TCONS_00000042 2278 2278 0.00524265 0.00762502 +TCONS_00000043 2111 2111 9.51204 12.7115 +TCONS_00000044 2790 2790 291.136 528.811 +TCONS_00000045 3054 3054 2.05334 4.11285 +TCONS_00000046 2960 2960 5.612 10.8679 +TCONS_00000047 2590 2590 21.0208 35.2095 +TCONS_00000048 2684 2684 6.52646 11.3654 +TCONS_00000049 2530 2530 29.7772 48.6133 +TCONS_00000050 1239 1239 644.637 464.085 +TCONS_00000051 1181 1181 137.01 93.0183 +TCONS_00000052 1932 1932 15.435 18.6737 +TCONS_00000053 2192 2192 201.703 281.098 +TCONS_00000054 2558 2558 3.23266 5.34153 +TCONS_00000055 1747 1747 0 0 +TCONS_00000056 1594 1594 83.5124 81.0804 +TCONS_00000057 1741 1741 475.434 510.996 +TCONS_00000058 491 491 55.8942 10.6831 +TCONS_00000059 2141 2141 41.0204 55.6882 +TCONS_00000060 2536 2536 494.032 808.638 +TCONS_00000061 3859 3859 77.4015 199.083 +TCONS_00000062 2432 2432 478.775 748.464 +TCONS_00000063 1939 1939 119.152 144.742 +TCONS_00000064 2667 2667 106.773 184.656 +TCONS_00000065 1170 1170 264.323 177.397 +TCONS_00000066 2611 2611 55.8615 94.3965 +TCONS_00000067 2467 2467 1032.87 1640.23 +TCONS_00000068 2329 2329 317.113 472.649 +TCONS_00000069 2616 2616 29.3079 49.6291 +TCONS_00000070 1048 1048 6.84937 4.00615 +TCONS_00000071 3243 3243 0.00599657 0.0128123 +TCONS_00000072 3201 3201 99.9908 210.673 +TCONS_00000073 3231 3231 0 0 +TCONS_00000074 3026 3026 102.016 202.32 +TCONS_00000076 2930 2930 47.3159 90.6262 +TCONS_00000077 2890 2890 25.253 47.6541 +TCONS_00000078 3311 3311 0 0 +TCONS_00000079 2590 2590 109.105 182.749 +TCONS_00000080 2308 2308 0 0 +TCONS_00000081 585 585 224.576 57.8466 +TCONS_00000082 1239 1239 36.4726 26.2572 +TCONS_00000083 1306 1306 17.9878 13.8017 +TCONS_00000084 905 905 0 0 +TCONS_00000085 850 850 8.25962 3.67487 +TCONS_00000086 906 906 51.4446 24.9253 +TCONS_00000087 848 848 16.8154 7.4577 +TCONS_00000088 1808 1808 89.9153 100.9 +TCONS_00000089 921 921 2.69713 1.33538 +TCONS_00000090 1101 1101 24.6753 15.3569 +TCONS_00000091 1925 1925 42.116 50.7445 +TCONS_00000092 2324 2324 863.746 1284.34 +TCONS_00000093 2112 2112 0 0 +TCONS_00000094 2032 2032 0 0 +TCONS_00000095 2009 2009 39.3944 49.8046 +TCONS_00000096 1745 1745 0 0 +TCONS_00000097 1212 1212 4.2835 3.002 +TCONS_00000098 1849 1849 8.06605 9.28521 +TCONS_00000099 1859 1859 18.5776 21.5169 +TCONS_00000100 2089 2089 57.7278 76.2475 +TCONS_00000101 1943 1943 109.674 133.539 +TCONS_00000102 5706 5706 778.44 3018.63 +TCONS_00000103 3093 3093 780.296 1584.45 +TCONS_00000104 3203 3203 22.6022 47.653 +TCONS_00000105 4834 4834 0 0 +TCONS_00000106 3951 3951 0 0 +TCONS_00000107 3939 3939 3.13321e-5 8.23607e-5 +TCONS_00000108 4854 4854 0.299922 0.982391 +TCONS_00000109 5564 5564 1.33074 5.02675 +TCONS_00000110 2241 2241 0 0 +TCONS_00000111 722 722 0 0 +TCONS_00000112 1671 1671 1.30241 1.33538 +TCONS_00000113 4460 4460 0.66837 2.00307 +TCONS_00000114 1704 1704 0 0 +TCONS_00000115 1561 1561 0 0 +TCONS_00000116 2709 2709 440.065 774.122 +TCONS_00000117 2763 2763 14.8261 26.6468 +TCONS_00000118 2677 2677 291.339 505.907 +TCONS_00000119 2697 2697 0 0 +TCONS_00000120 2601 2601 6.79634 11.4366 +TCONS_00000121 2598 2598 0.0455975 0.0766329 +TCONS_00000122 2571 2571 93.9943 156.177 +TCONS_00000124 8659 8659 4.02601 24.0167 +TCONS_00000125 8716 8716 0 0 +TCONS_00000126 8662 8662 1.12227 6.69713 +TCONS_00000127 8719 8719 0 0 +TCONS_00000128 8720 8720 0 0 +TCONS_00000129 2902 2902 241.562 457.892 +TCONS_00000130 2209 2209 68.179 95.8353 +TCONS_00000131 2217 2217 41.0076 57.874 +TCONS_00000132 1403 1403 14.107 11.7914 +TCONS_00000133 1817 1817 8.19158 9.24441 +TCONS_00000134 2425 2425 495.731 772.518 +TCONS_00000135 2248 2248 0 0 +TCONS_00000136 1904 1904 0.254416 0.302762 +TCONS_00000137 2845 2845 64.0217 118.776 +TCONS_00000138 1585 1585 5.07964 4.8994 +TCONS_00000140 2728 2728 2.00297 3.55035 +TCONS_00000141 2673 2673 0 0 +TCONS_00000142 1091 1091 0 0 +TCONS_00000144 1894 1894 0 0 +TCONS_00000145 2174 2174 0.483518 0.667691 +TCONS_00000146 545 545 66.9717 15.3569 +TCONS_00000147 760 760 0 0 +TCONS_00000149 956 956 0 0 +TCONS_00000151 3027 3027 111.505 221.217 +TCONS_00000152 3077 3077 0.00154959 0.00312902 +TCONS_00000154 3151 3151 3.40925 7.06252 +TCONS_00000156 3196 3196 11.6186 24.4385 +TCONS_00000157 3099 3099 0 0 +TCONS_00000158 1950 1950 1.30551 1.59605 +TCONS_00000159 1279 1279 17.4997 13.0931 +TCONS_00000160 1055 1055 12.4518 7.3446 +TCONS_00000163 2070 2070 26.5836 34.7548 +TCONS_00000164 2922 2922 46.1334 88.1003 +TCONS_00000165 4625 4625 15.2255 47.4061 +TCONS_00000166 3128 3128 15.0807 30.9957 +TCONS_00000167 2388 2388 13.3614 20.4721 +TCONS_00000168 3171 3171 0 0 +TCONS_00000169 3129 3129 93.5006 192.239 +TCONS_00000170 3557 3557 0 0 +TCONS_00000171 3426 3426 0 0 +TCONS_00000172 3137 3137 0 0 +TCONS_00000173 1293 1293 8.74938 6.63283 +TCONS_00000174 3963 3963 28.8931 76.4397 +TCONS_00000175 1412 1412 16.5231 13.916 +TCONS_00000176 1421 1421 14.7466 12.5137 +TCONS_00000177 1248 1248 123.19 89.4706 +TCONS_00000178 687 687 1575.62 519.464 +TCONS_00000179 3530 3530 17.6105 41.1998 +TCONS_00000180 1883 1883 137.568 161.667 +TCONS_00000181 2698 2698 0 0 +TCONS_00000182 1936 1936 0 0 +TCONS_00000183 1293 1293 0.880753 0.667691 +TCONS_00000184 2364 2364 0 0 +TCONS_00000185 2257 2257 8.04411 11.5801 +TCONS_00000186 2337 2337 90.7195 135.728 +TCONS_00000187 2265 2265 127.547 184.335 +TCONS_00000188 2483 2483 99.4845 159.11 +TCONS_00000189 3669 3669 655.977 1599.12 +TCONS_00000190 1363 1363 112.645 90.9698 +TCONS_00000191 1270 1270 93.2031 69.1411 +TCONS_00000192 2094 2094 16.9919 22.5031 +TCONS_00000193 722 722 1659.2 588.071 +TCONS_00000194 8441 8441 6.92569 40.247 +TCONS_00000195 5417 5417 23.9562 88.0028 +TCONS_00000196 5158 5158 0 0 +TCONS_00000197 3979 3979 0 0 +TCONS_00000198 2204 2204 486.681 682.38 +TCONS_00000199 1523 1523 4.82425 4.44162 +TCONS_00000200 3524 3524 6.9065 16.1285 +TCONS_00000201 3414 3414 25.0874 56.6347 +TCONS_00000202 6251 6251 8.38518 35.7466 +TCONS_00000203 6278 6278 39.5786 169.482 +TCONS_00000204 6336 6336 0 0 +TCONS_00000205 1476 1476 30.8664 27.3927 +TCONS_00000206 902 902 6554.32 3157.08 +TCONS_00000207 842 842 29.254 12.8502 +TCONS_00000208 960 960 2449.31 1280.21 +TCONS_00000209 2323 2323 17.5192 26.0377 +TCONS_00000210 2400 2400 30.7869 47.4324 +TCONS_00000211 1756 1756 8.58788 9.3213 +TCONS_00000214 9113 9113 81.9967 515.457 +TCONS_00000215 3115 3115 24.6116 50.3584 +TCONS_00000216 2961 2961 54.3105 105.214 +TCONS_00000217 1460 1460 178.52 156.41 +TCONS_00000218 1536 1536 29.2565 27.205 +TCONS_00000219 3848 3848 173.365 444.561 +TCONS_00000220 3735 3735 220.29 547.294 +TCONS_00000221 5410 5410 267.299 980.599 +TCONS_00000222 5336 5336 139.07 502.911 +TCONS_00000223 5482 5482 23.0065 85.5712 +TCONS_00000224 3780 3780 40.3336 101.489 +TCONS_00000225 654 654 231.02 70.7752 +TCONS_00000227 5515 5515 1138.01 4259.29 +TCONS_00000228 5902 5902 23.759 95.4244 +TCONS_00000229 5548 5548 0 0 +TCONS_00000230 5400 5400 4.24728 15.5513 +TCONS_00000231 1035 1035 21.7232 12.5061 +TCONS_00000232 2038 2038 20.7482 26.6564 +TCONS_00000233 1574 1574 0 0 +TCONS_00000234 7662 7662 192.279 1011.49 +TCONS_00000235 10579 10579 369.887 2708.57 +TCONS_00000236 10667 10667 2.13723 15.7832 +TCONS_00000237 8667 8667 5.85708 34.9728 +TCONS_00000240 8703 8703 90.7981 544.469 +TCONS_00000241 1936 1936 7018.51 8511 +TCONS_00000243 1870 1870 481.64 561.589 +TCONS_00000244 2051 2051 0 0 +TCONS_00000245 1235 1235 99.4435 71.3098 +TCONS_00000246 1467 1467 0 0 +TCONS_00000247 1400 1400 11.7569 9.80209 +TCONS_00000248 1427 1427 135.998 115.982 +TCONS_00000249 1184 1184 24.3266 16.5673 +TCONS_00000250 309 309 99.0756 6.19835 +TCONS_00000251 1132 1132 5.2482 3.38128 +TCONS_00000252 1125 1125 8.71805 5.57368 +TCONS_00000253 1924 1924 615.762 741.48 +TCONS_00000256 1795 1795 3.47386 3.86631 +TCONS_00000258 4216 4216 2806.14 7925.84 +TCONS_00000259 4052 4052 49.9152 135.197 +TCONS_00000260 2237 2237 0.936822 1.33538 +TCONS_00000261 3653 3653 320.299 777.192 +TCONS_00000262 759 759 17.5449 6.67737 +TCONS_00000263 5213 5213 60.5395 213.661 +TCONS_00000264 2837 2837 0 0 +TCONS_00000265 2933 2933 19.7517 37.8731 +TCONS_00000266 781 781 156.742 62.092 +TCONS_00000267 3319 3319 158.063 346.213 +TCONS_00000268 2947 2947 52.4475 101.085 +TCONS_00000269 2822 2822 81.3674 149.634 +TCONS_00000270 2918 2918 0 0 +TCONS_00000271 2688 2688 95.0734 165.833 +TCONS_00000272 1547 1547 29.5516 27.7092 +TCONS_00000273 1773 1773 324.287 355.879 +TCONS_00000274 3728 3728 227.009 562.863 +TCONS_00000275 1279 1279 193.737 144.953 +TCONS_00000276 1258 1258 32.0848 23.5294 +TCONS_00000277 1182 1182 1129.46 767.608 +TCONS_00000278 1161 1161 205.154 136.381 +TCONS_00000279 1126 1126 18.5276 11.8583 +TCONS_00000280 726 726 3.73785 1.33538 +TCONS_00000281 2663 2663 2.06969 3.5735 +TCONS_00000282 1738 1738 1.37483 1.47475 +TCONS_00000283 1202 1202 1.00187 0.695061 +TCONS_00000284 1077 1077 6.40095 3.87509 +TCONS_00000285 1041 1041 9.42449 5.46568 +TCONS_00000286 1194 1194 29.7678 20.4833 +TCONS_00000287 5643 5643 332.903 1276.1 +TCONS_00000288 5627 5627 6.62842 25.3334 +TCONS_00000290 837 837 15.5261 6.76515 +TCONS_00000291 957 957 0 0 +TCONS_00000292 660 660 0 0 +TCONS_00000293 467 467 0 0 +TCONS_00000295 934 934 0 0 +TCONS_00000296 3003 3003 919.86 1809.32 +TCONS_00000297 3144 3144 3.61408 7.46896 +TCONS_00000298 4676 4676 748.539 2357.64 +TCONS_00000299 4531 4531 171.017 521.114 +TCONS_00000300 1588 1588 1282.01 1239.23 +TCONS_00000301 3684 3684 391.988 959.732 +TCONS_00000302 3593 3593 17.814 42.4693 +TCONS_00000303 2359 2359 0.275802 0.416926 +TCONS_00000304 2151 2151 11.0315 15.054 +TCONS_00000305 3674 3674 18.8435 46.0028 +TCONS_00000306 3574 3574 10.7311 25.4393 +TCONS_00000307 3561 3561 3.53674e-4 8.35172e-4 +TCONS_00000308 16326 16326 0 0 +TCONS_00000309 16251 16251 79.9709 906.263 +TCONS_00000310 13946 13946 73.4533 712.712 +TCONS_00000311 4062 4062 0 0 +TCONS_00000312 5671 5671 17.2952 66.6391 +TCONS_00000313 4219 4219 5.77674 16.3284 +TCONS_00000314 152 152 598.194 0.668656 +TCONS_00000315 1574 1574 1.39576 1.33538 +TCONS_00000316 3832 3832 2.27658 5.81211 +TCONS_00000317 4049 4049 8.95431 24.234 +TCONS_00000318 897 897 1.39642 0.667691 +TCONS_00000319 1018 1018 1.18451 0.667691 +TCONS_00000320 1783 1783 0 0 +TCONS_00000321 1606 1606 0 0 +TCONS_00000325 1855 1855 0 0 +TCONS_00000326 1863 1863 0 0 +TCONS_00000330 1863 1863 0 0 +TCONS_00000331 1557 1557 0 0 +TCONS_00000333 2804 2804 799.02 1459.23 +TCONS_00000334 2810 2810 922.2 1688.1 +TCONS_00000335 2699 2699 3.52794 6.1811 +TCONS_00000339 2700 2700 24.4573 42.8675 +TCONS_00000340 7456 7456 9.41927 48.1789 +TCONS_00000341 7955 7955 19.5836 107.077 +TCONS_00000342 2129 2129 1.67704 2.26247 +TCONS_00000343 2020 2020 0 0 +TCONS_00000344 6272 6272 101.184 432.858 +TCONS_00000345 2301 2301 0 0 +TCONS_00000347 4052 4052 0.885387 2.39809 +TCONS_00000348 3905 3905 53.6921 139.847 +TCONS_00000349 3833 3833 0 0 +TCONS_00000350 6021 6021 8.38885 34.3983 +TCONS_00000351 3842 3842 16.7104 42.7798 +TCONS_00000352 3643 3643 0.00387759 0.0093814 +TCONS_00000353 3653 3653 0 0 +TCONS_00000354 3393 3393 72.5057 162.605 +TCONS_00000355 4528 4528 6.86848 20.9147 +TCONS_00000356 2015 2015 20.2796 25.7247 +TCONS_00000357 1942 1942 27.966 34.0316 +TCONS_00000358 1879 1879 23.8225 27.9284 +TCONS_00000359 1911 1911 33.2716 39.7587 +TCONS_00000360 1984 1984 124.867 155.658 +TCONS_00000361 5090 5090 5.47619 18.8508 +TCONS_00000362 3506 3506 1.3734 3.18976 +TCONS_00000365 1378 1378 0.913746 0.74761 +TCONS_00000367 2419 2419 453.262 704.414 +TCONS_00000368 899 899 0 0 +TCONS_00000369 753 753 0 0 +TCONS_00000371 922 922 1.34697 0.667851 +TCONS_00000372 2314 2314 35.0507 51.8706 +TCONS_00000373 6023 6023 92.1784 378.106 +TCONS_00000374 5838 5838 38.1138 151.354 +TCONS_00000375 2927 2927 1.16646 2.23169 +TCONS_00000376 1462 1462 2.56813 2.2537 +TCONS_00000377 1759 1759 273.927 297.902 +TCONS_00000379 1853 1853 295.929 341.495 +TCONS_00000380 2770 2770 327.504 590.239 +TCONS_00000381 4120 4120 790.835 2180.01 +TCONS_00000382 3070 3070 10.9386 22.0338 +TCONS_00000383 1741 1741 0 0 +TCONS_00000384 1518 1518 26.9362 24.7046 +TCONS_00000385 3493 3493 18.9042 43.7319 +TCONS_00000386 3349 3349 862.515 1907.49 +TCONS_00000388 1524 1524 18.0444 16.626 +TCONS_00000389 2792 2792 37.0068 67.2704 +TCONS_00000390 12227 12227 255.807 2171.22 +TCONS_00000391 11900 11900 121.154 1000.32 +TCONS_00000393 3059 3059 0 0 +TCONS_00000395 2532 2532 4.4770200000000004 7.31538 +TCONS_00000396 2406 2406 10.7721 16.6419 +TCONS_00000397 2535 2535 1.26881 2.0759 +TCONS_00000398 903 903 0 0 +TCONS_00000399 1097 1097 6.95428 4.3084 +TCONS_00000401 2128 2128 42.2014 56.9035 +TCONS_00000402 1498 1498 0 0 +TCONS_00000403 3583 3583 564.628 1342.11 +TCONS_00000404 3580 3580 573.979 1363.11 +TCONS_00000405 3633 3633 292.947 706.682 +TCONS_00000406 1342 1342 0 0 +TCONS_00000407 2079 2079 526.257 691.366 +TCONS_00000408 2003 2003 27.842 35.0814 +TCONS_00000409 2001 2001 0 0 +TCONS_00000410 2415 2415 13.2309 20.5247 +TCONS_00000411 1397 1397 5.64704 4.69614 +TCONS_00000412 1586 1586 3.9022 3.76649 +TCONS_00000413 2635 2635 3.57446 6.10087 +TCONS_00000414 1403 1403 6.47536 5.41246 +TCONS_00000415 1748 1748 0 0 +TCONS_00000416 2736 2736 0 0 +TCONS_00000417 2413 2413 50.8967 78.8827 +TCONS_00000418 2026 2026 25.8646 33.0103 +TCONS_00000419 1668 1668 7.71415 7.89306 +TCONS_00000420 6656 6656 445.797 2028.1 +TCONS_00000421 2614 2614 29.9508 50.6754 +TCONS_00000422 6137 6137 109.897 459.644 +TCONS_00000423 2424 2424 66.8221 104.084 +TCONS_00000424 3847 3847 1.56229 4.00509 +TCONS_00000425 2600 2600 0 0 +TCONS_00000427 2455 2455 0 0 +TCONS_00000428 2086 2086 8.02138e-4 0.00105777 +TCONS_00000429 3186 3186 7.32565 15.3569 +TCONS_00000430 1551 1551 0 0 +TCONS_00000431 2265 2265 3.23397 4.67384 +TCONS_00000432 2347 2347 0 0 +TCONS_00000433 3667 3667 63.1812 153.932 +TCONS_00000434 4493 4493 64.4296 194.596 +TCONS_00000435 4260 4260 0 0 +TCONS_00000436 4245 4245 471.983 1342.77 +TCONS_00000437 2011 2011 2.56737 3.24944 +TCONS_00000438 4599 4599 26.1816 81.0376 +TCONS_00000439 3481 3481 0 0 +TCONS_00000440 3691 3691 0 0 +TCONS_00000441 3075 3075 6.41233 12.9391 +TCONS_00000442 2261 2261 42.5065 61.3115 +TCONS_00000443 1859 1859 19.0239 22.0338 +TCONS_00000444 1943 1943 403.63 491.459 +TCONS_00000445 1884 1884 2.80624 3.29983 +TCONS_00000446 1111 1111 13.7902 8.67998 +TCONS_00000447 5055 5055 229.754 785.202 +TCONS_00000448 4093 4093 18.7817 51.4149 +TCONS_00000449 2259 2259 0 0 +TCONS_00000450 2253 2253 0 0 +TCONS_00000451 6052 6052 1.78164 7.3446 +TCONS_00000452 2272 2272 975.859 1415.17 +TCONS_00000453 1884 1884 211.245 248.4 +TCONS_00000454 1642 1642 0 0 +TCONS_00000455 2254 2254 29.0774 41.7975 +TCONS_00000456 1611 1611 29.5477 29.0423 +TCONS_00000457 1740 1740 50.8958 54.6667 +TCONS_00000458 2298 2298 22.0813 32.4277 +TCONS_00000459 2589 2589 668.267 1118.86 +TCONS_00000460 2025 2025 140.67 179.435 +TCONS_00000461 2054 2054 0 0 +TCONS_00000462 2088 2088 0 0 +TCONS_00000463 2021 2021 28.5763 36.3702 +TCONS_00000464 1983 1983 19.8291 24.7046 +TCONS_00000465 6506 6506 168.3 747.814 +TCONS_00000466 2793 2793 0 0 +TCONS_00000467 2581 2581 0 0 +TCONS_00000468 1893 1893 1.69429 2.00307 +TCONS_00000469 2719 2719 0 0 +TCONS_00000470 2971 2971 15.1098 29.3784 +TCONS_00000471 3743 3743 9.61778 23.949 +TCONS_00000472 4475 4475 7.89476 23.744 +TCONS_00000473 4419 4419 0 0 +TCONS_00000474 2908 2908 1.25478 2.38382 +TCONS_00000476 2581 2581 46.0167 76.7845 +TCONS_00000477 957 957 114.155 59.4245 +TCONS_00000478 1078 1078 0 0 +TCONS_00000479 787 787 0 0 +TCONS_00000480 2659 2659 312.15 538.072 +TCONS_00000481 1658 1658 109.82 111.591 +TCONS_00000482 2437 2437 8.94923 14.0219 +TCONS_00000483 105 105 4463.09 0.667691 +TCONS_00000484 3765 3765 0 0 +TCONS_00000485 4294 4294 30.1262 86.7515 +TCONS_00000486 3729 3729 2.73471 6.78258 +TCONS_00000487 3555 3555 31.8895 75.1691 +TCONS_00000488 2595 2595 4828.38 8104.53 +TCONS_00000489 2554 2554 63.3631 104.52 +TCONS_00000490 2430 2430 46.4369 72.5287 +TCONS_00000491 2314 2314 106.566 157.704 +TCONS_00000492 2557 2557 0 0 +TCONS_00000493 4012 4012 19.3799 51.943 +TCONS_00000494 987 987 10.9134 5.91255 +TCONS_00000495 1001 1001 0 0 +TCONS_00000498 1100 1100 0 0 +TCONS_00000499 1036 1036 447.128 257.729 +TCONS_00000501 1512 1512 13.8912 12.6814 +TCONS_00000502 2293 2293 41.4162 60.6758 +TCONS_00000503 2167 2167 57.8233 79.5621 +TCONS_00000504 2094 2094 1585.92 2100.3 +TCONS_00000505 2302 2302 7.16606 10.5441 +TCONS_00000506 2343 2343 10.9306 16.3999 +TCONS_00000507 8992 8992 6.76406 41.9424 +TCONS_00000508 8704 8704 170.816 1024.41 +TCONS_00000509 8368 8368 95.8222 551.902 +TCONS_00000510 2160 2160 34.7413 47.6305 +TCONS_00000511 1844 1844 50.9272 58.4447 +TCONS_00000512 4996 4996 11.5639 39.0382 +TCONS_00000519 4032 4032 41.8281 112.701 +TCONS_00000520 4868 4868 57.9142 190.27 +TCONS_00000521 4865 4865 172.5 566.362 +TCONS_00000522 4629 4629 0 0 +TCONS_00000523 3565 3565 9.03718 21.3661 +TCONS_00000524 3035 3035 3270.03 6505.97 +TCONS_00000525 3107 3107 821.993 1677.25 +TCONS_00000526 887 887 0 0 +TCONS_00000527 2815 2815 4.36875 8.01248 +TCONS_00000528 2178 2178 0.965061 1.33538 +TCONS_00000529 1779 1779 0 0 +TCONS_00000530 1625 1625 0 0 +TCONS_00000531 607 607 6796.7 1856.41 +TCONS_00000532 604 604 2376.22 643.987 +TCONS_00000533 594 594 68660.9 18122.6 +TCONS_00000534 1975 1975 225.252 279.362 +TCONS_00000535 4942 4942 559.003 1865.78 +TCONS_00000536 1620 1620 1297.85 1283.91 +TCONS_00000537 1576 1576 25.1492 24.096800000000002 +TCONS_00000538 1686 1686 0 0 +TCONS_00000539 1728 1728 310.989 331.392 +TCONS_00000540 1622 1622 805.497 797.984 +TCONS_00000541 1590 1590 1747.45 1691.62 +TCONS_00000542 2412 2412 1205.09 1866.86 +TCONS_00000544 2799 2799 26.7396 48.7391 +TCONS_00000545 2699 2699 0.00132746 0.00232577 +TCONS_00000546 2512 2512 0 0 +TCONS_00000547 1814 1814 1.18978 1.34017 +TCONS_00000548 1732 1732 57.1381 61.0484 +TCONS_00000549 5425 5425 90.153 331.686 +TCONS_00000550 5535 5535 3.35949 12.6213 +TCONS_00000551 2736 2736 7.09368 12.614 +TCONS_00000552 1697 1697 130.808 136.523 +TCONS_00000553 1413 1413 0 0 +TCONS_00000554 1269 1269 16.6931 12.3717 +TCONS_00000555 1271 1271 0 0 +TCONS_00000556 1097 1097 0 0 +TCONS_00000557 3953 3953 2.27748 6.00922 +TCONS_00000558 3933 3933 863.129 2265.19 +TCONS_00000559 3969 3969 0 0 +TCONS_00000560 2393 2393 44.7208 68.6787 +TCONS_00000561 2510 2510 769.696 1245.7 +TCONS_00000562 1489 1489 60.5994 54.3365 +TCONS_00003803 842 842 278.207 122.206 +TCONS_00003804 2411 2411 0 0 +TCONS_00003807 1745 1745 0 0 +TCONS_00003808 1745 1745 3.57053 3.8477 +TCONS_00003809 1768 1768 131.595 143.949 +TCONS_00003810 1636 1636 9.85097 9.85659 +TCONS_00003812 3181 3181 11.7119 24.5104 +TCONS_00003813 3517 3517 51.6629 120.391 +TCONS_00003814 1189 1189 4.5329 3.10309 +TCONS_00003816 1134 1134 11.4206 7.37417 +TCONS_00003817 1097 1097 0.0179845 0.011142 +TCONS_00003818 717 717 194.107 68.1115 +TCONS_00003819 1577 1577 91.1326 87.3835 +TCONS_00003820 1148 1148 34.3034 22.4888 +TCONS_00003821 1022 1022 234.799 133.016 +TCONS_00003822 806 806 44.1181 18.2567 +TCONS_00003824 1129 1129 9.35791 6.00922 +TCONS_00003825 2373 2373 2.41348 3.6723 +TCONS_00003826 1390 1390 642.52 531.148 +TCONS_00003827 937 937 0 0 +TCONS_00003828 4272 4272 15.4828 44.3435 +TCONS_00003829 4295 4295 317.299 913.919 +TCONS_00003830 4812 4812 180.34 585.347 +TCONS_00003831 78 78 1377990 4.67384 +TCONS_00003833 78 78 1377990 4.67384 +TCONS_00003835 683 683 548.794 179.38 +TCONS_00003836 1317 1317 239.489 185.618 +TCONS_00003837 1316 1316 25.0055 19.363 +TCONS_00003838 1704 1704 2.54688 2.67076 +TCONS_00003839 496 496 0 0 +TCONS_00003840 436 436 8.77096 1.33538 +TCONS_00003841 4282 4282 97.1336 278.882 +TCONS_00003842 2799 2799 567.353 1034.13 +TCONS_00003843 2814 2814 1211.84 2221.71 +TCONS_00003844 896 896 101.407 48.4156 +TCONS_00003845 1214 1214 8.47086 5.9486 +TCONS_00003846 3040 3040 1.03541 2.06369 +TCONS_00003847 962 962 22.8582 11.9799 +TCONS_00003848 1040 1040 4.67735 2.70929 +TCONS_00003849 1870 1870 0 0 +TCONS_00003850 1750 1750 34.9971 37.8375 +TCONS_00003851 1741 1741 6.44643 6.92861 +TCONS_00003852 2741 2741 13.8289 24.6394 +TCONS_00003853 1979 1979 110.321 137.135 +TCONS_00003854 2373 2373 4.30905 6.55657 +TCONS_00003855 2276 2276 37.9034 55.0739 +TCONS_00003856 2704 2704 6.60276 11.5917 +TCONS_00003857 2104 2104 0 0 +TCONS_00003858 3532 3532 5.4193 12.6861 +TCONS_00003859 1062 1062 0 0 +TCONS_00003860 1178 1178 0 0 +TCONS_00003861 1199 1199 34.7535 24.0369 +TCONS_00003862 988 988 0 0 +TCONS_00003863 1067 1067 0 0 +TCONS_00003864 1700 1700 0.638442 0.667691 +TCONS_00003865 3539 3539 101.228 237.466 +TCONS_00003866 2021 2021 1529.33 1946.44 +TCONS_00003867 2137 2137 33.2717 45.0746 +TCONS_00003869 2153 2153 0 0 +TCONS_00003870 771 771 250.811 97.5835 +TCONS_00003871 1036 1036 32.4342 18.6953 +TCONS_00003872 2262 2262 13.0385 18.816 +TCONS_00003873 2379 2379 29.7214 45.3495 +TCONS_00003874 2306 2306 0 0 +TCONS_00003875 2258 2258 664.648 957.282 +TCONS_00003876 2387 2387 33.5246 51.3422 +TCONS_00003877 2127 2127 15.5895 21.0096 +TCONS_00003878 2380 2380 24.8518 37.9371 +TCONS_00003879 3517 3517 34.6694 80.7906 +TCONS_00003880 3211 3211 171.766 363.112 +TCONS_00003881 5325 5325 119.365 430.722 +TCONS_00003882 3759 3759 143.984 360.162 +TCONS_00003883 1946 1946 129.018 157.366 +TCONS_00003884 2880 2880 85.1209 160.027 +TCONS_00003885 2135 2135 1573.93 2130.05 +TCONS_00003886 2608 2608 44.7784 75.5729 +TCONS_00003887 2510 2510 36.1981 58.584 +TCONS_00003888 1832 1832 14.2929 16.2815 +TCONS_00003891 1918 1918 89.019 106.816 +TCONS_00003892 2069 2069 3.96502 5.18098 +TCONS_00003893 2242 2242 77.1676 110.27 +TCONS_00003894 1570 1570 43.2744 41.2799 +TCONS_00003895 1104 1104 385.416 240.685 +TCONS_00003896 2483 2483 135.317 216.418 +TCONS_00003897 2182 2182 294.499 408.34 +TCONS_00003898 2193 2193 27.9163 38.9246 +TCONS_00003899 2923 2923 653.742 1248.91 +TCONS_00003900 4402 4402 185.142 547.272 +TCONS_00003901 2005 2005 0 0 +TCONS_00003902 1987 1987 14.8233 18.5099 +TCONS_00003903 1996 1996 37.794 47.434 +TCONS_00003904 2299 2299 70.0963 102.99 +TCONS_00003905 2728 2728 21.8431 38.7179 +TCONS_00003906 781 781 1686.92 668.257 +TCONS_00003907 813 813 228.324 95.6137 +TCONS_00003908 909 909 730.45 355.458 +TCONS_00003909 990 990 986.496 536.545 +TCONS_00003910 2914 2914 15.015 28.589 +TCONS_00003911 4362 4362 108.402 317.366 +TCONS_00003912 2868 2868 134.998 252.651 +TCONS_00003913 5269 5269 353.551 1261.78 +TCONS_00003914 3115 3115 462.693 946.728 +TCONS_00003915 3129 3129 100.345 206.312 +TCONS_00003916 3839 3839 126.807 324.365 +TCONS_00003917 732 732 4766.04 1722.93 +TCONS_00003918 1148 1148 84.3515 55.2997 +TCONS_00003919 1456 1456 0.0032772 0.00286205 +TCONS_00003920 1475 1475 74.6134 66.1637 +TCONS_00003921 2016 2016 6.26152 7.94715 +TCONS_00003922 1116 1116 63.2919 40.0615 +TCONS_00003923 1302 1302 3288.48 2513.89 +TCONS_00003924 1497 1497 14.6336 13.204 +TCONS_00003925 2970 2970 251.525 488.869 +TCONS_00003926 1629 1629 224.556 223.573 +TCONS_00003927 2053 2053 50.9762 66.0326 +TCONS_00003928 1877 1877 211.301 247.421 +TCONS_00003929 2452 2452 0 0 +TCONS_00003932 2431 2431 5.77119 9.01797 +TCONS_00003934 2499 2499 108.302 174.438 +TCONS_00003935 262 262 1463.07 43.1053 +TCONS_00003936 335 335 308.081 24.9271 +TCONS_00003937 2236 2236 12.7174 18.1188 +TCONS_00003938 5141 5141 277.374 964.81 +TCONS_00003939 6420 6420 93.5897 410.161 +TCONS_00003940 6002 6002 22.189 90.6876 +TCONS_00003941 5915 5915 227.158 914.435 +TCONS_00003942 1231 1231 141.955 101.393 +TCONS_00003943 2279 2279 41.3696 60.198 +TCONS_00003944 1777 1777 100.762 110.864 +TCONS_00003945 1557 1557 140.87 133.083 +TCONS_00003946 1504 1504 89.5491 81.2438 +TCONS_00003947 2595 2595 286.157 480.32 +TCONS_00003948 2625 2625 643.906 1094.47 +TCONS_00003949 1966 1966 134.03 165.374 +TCONS_00003950 1920 1920 0 0 +TCONS_00003951 1277 1277 36.1157 26.9705 +TCONS_00003952 1108 1108 31.7757 19.9332 +TCONS_00003953 1120 1120 2.06326 1.3118 +TCONS_00003954 1150 1150 22.611 14.8554 +TCONS_00003955 887 887 20.6379 9.72203 +TCONS_00003956 704 704 11.4358 3.9077 +TCONS_00003957 734 734 0 0 +TCONS_00003958 657 657 0 0 +TCONS_00003959 2149 2149 133.768 182.357 +TCONS_00003961 3841 3841 369.77 946.374 +TCONS_00003962 1430 1430 298.518 255.216 +TCONS_00003963 3021 3021 22.3949 44.3346 +TCONS_00003964 3127 3127 0 0 +TCONS_00003965 3228 3228 600.882 1277.48 +TCONS_00003966 3152 3152 311.239 644.974 +TCONS_00003967 3646 3646 94.5147 228.868 +TCONS_00003968 1431 1431 216.204 184.995 +TCONS_00003969 3127 3127 4654.8 9563.79 +TCONS_00003970 2981 2981 3.19151 6.22791 +TCONS_00003971 1118 1118 221.053 140.231 +TCONS_00003972 958 958 70.419 36.7072 +TCONS_00003973 2097 2097 2.32425 3.08304 +TCONS_00003974 2755 2755 0.887906 1.5908 +TCONS_00003975 4710 4710 1.05187 3.33831 +TCONS_00003976 2572 2572 0 0 +TCONS_00003977 2145 2145 1.06305e-4 1.44617e-4 +TCONS_00003978 1954 1954 7.62842 9.34767 +TCONS_00003979 1253 1253 21.6946 15.833 +TCONS_00003980 2347 2347 75.316 113.215 +TCONS_00003981 2216 2216 0 0 +TCONS_00003982 2266 2266 21.6975 31.3733 +TCONS_00003983 728 728 1798.76 645.168 +TCONS_00003984 1641 1641 33.1709 33.3071 +TCONS_00003985 1826 1826 0 0 +TCONS_00003986 2248 2248 860.461 1233.23 +TCONS_00003987 1345 1345 63.5892 50.544 +TCONS_00003988 1530 1530 5.34965 4.95182 +TCONS_00003989 2072 2072 10.2022 13.3525 +TCONS_00003990 2012 2012 479.585 607.336 +TCONS_00003991 2642 2642 353.008 604.26 +TCONS_00003993 1305 1305 3.48402 2.67076 +TCONS_00003995 2209 2209 0.949827 1.33512 +TCONS_00003996 2303 2303 1.78559e-4 2.62856e-4 +TCONS_00003997 3322 3322 0 0 +TCONS_00003998 2754 2754 0 0 +TCONS_00003999 2902 2902 11.393 21.5959 +TCONS_00004000 2222 2222 0 0 +TCONS_00004001 620 620 0 0 +TCONS_00004002 6472 6472 39.559 174.823 +TCONS_00004003 7432 7432 170.351 868.444 +TCONS_00004004 1698 1698 366.357 382.623 +TCONS_00004005 2041 2041 215.564 277.404 +TCONS_00004006 5724 5724 72.2483 281.083 +TCONS_00004007 3322 3322 12.3237 27.0192 +TCONS_00004008 6356 6356 435.737 1889.92 +TCONS_00004009 2648 2648 1413.21 2425.05 +TCONS_00004010 6458 6458 20.0393 88.3613 +TCONS_00004011 5892 5892 114.092 457.428 +TCONS_00004012 2208 2208 63.4796 89.1848 +TCONS_00004013 1660 1660 535.353 544.741 +TCONS_00004014 2505 2505 14.9431 24.1315 +TCONS_00004015 847 847 0 0 +TCONS_00004016 5002 5002 147.254 497.735 +TCONS_00004017 4370 4370 33.3677 97.8783 +TCONS_00004018 3630 3630 12.0984 29.1596 +TCONS_00004020 2773 2773 7.10227 12.815 +TCONS_00004021 1349 1349 10.9532 8.7371200000000009 +TCONS_00004022 6343 6343 3.33866 14.4501 +TCONS_00004023 7735 7735 0 0 +TCONS_00004024 9646 9646 10.9131 72.715 +TCONS_00004025 3491 3491 4.61506 10.6697 +TCONS_00004026 2198 2198 6.91298 9.66343 +TCONS_00004027 2084 2084 4565.03 6013.41 +TCONS_00004028 2067 2067 54.0791 70.5872 +TCONS_00004029 4813 4813 1246.08 4045.4 +TCONS_00004030 4920 4920 160.025 531.625 +TCONS_00004031 2710 2710 156.502 275.414 +TCONS_00004032 2632 2632 90.2876 153.911 +TCONS_00004033 1413 1413 1649.47 1390.38 +TCONS_00004034 1429 1429 0 0 +TCONS_00004035 1624 1624 117.878 116.945 +TCONS_00004036 1294 1294 897.561 681.068 +TCONS_00004037 1804 1804 1015.39 1136.56 +TCONS_00004038 1877 1877 9.06258 10.6117 +TCONS_00004039 1802 1802 148.621 166.147 +TCONS_00004040 1200 1200 0 0 +TCONS_00004041 4259 4259 7.25024 20.6984 +TCONS_00004042 1066 1066 0 0 +TCONS_00004043 1559 1559 0 0 +TCONS_00004044 1448 1448 39.5195 34.2897 +TCONS_00004046 1615 1615 168.831 166.42 +TCONS_00004048 1480 1480 0 0 +TCONS_00004049 1642 1642 11.3945 11.4493 +TCONS_00004051 894 894 84.5086 40.2281 +TCONS_00004052 3694 3694 38.2061 93.8129 +TCONS_00004053 5038 5038 28.3954 96.7022 +TCONS_00004054 4725 4725 47.4503 151.095 +TCONS_00004055 4698 4698 61.6005 194.978 +TCONS_00004056 4715 4715 34.3738 109.213 +TCONS_00004058 4643 4643 0 0 +TCONS_00004059 4783 4783 13.8034 44.5201 +TCONS_00004060 4761 4761 59.2999 190.337 +TCONS_00004061 5221 5221 0 0 +TCONS_00004062 4528 4528 5.84589 17.8009 +TCONS_00004063 1548 1548 67.1539 63.0145 +TCONS_00004064 2832 2832 215.563 397.944 +TCONS_00004065 2864 2864 0 0 +TCONS_00004066 6318 6318 76.6261 330.292 +TCONS_00004067 3475 3475 160.545 369.354 +TCONS_00004068 4486 4486 147.948 446.112 +TCONS_00004069 1357 1357 0 0 +TCONS_00004070 3293 3293 1381.76 3001.14 +TCONS_00004071 3137 3137 35.9037 74.0218 +TCONS_00004072 3219 3219 17.589 37.2824 +TCONS_00004074 643 643 0 0 +TCONS_00004075 647 647 0 0 +TCONS_00004076 1883 1883 0 0 +TCONS_00004077 3128 3128 497.354 1022.22 +TCONS_00004078 2156 2156 23.436 32.0646 +TCONS_00004079 6306 6306 378.897 1630 +TCONS_00004080 8192 8192 26.2619 147.992 +TCONS_00004081 8007 8007 636.017 3500.92 +TCONS_00004082 2592 2592 0 0 +TCONS_00004083 584 584 0 0 +TCONS_00004084 2710 2710 5.98779 10.5374 +TCONS_00004085 2267 2267 214.36 310.103 +TCONS_00004086 1812 1812 30626.9 34455 +TCONS_00004087 1801 1801 9684.53 10819.7 +TCONS_00004088 1753 1753 68.3653 74.0588 +TCONS_00004089 1683 1683 3401.14 3516.09 +TCONS_00004090 1644 1644 6.65942 6.70087 +TCONS_00004091 1453 1453 11038.9 9617.1 +TCONS_00004092 1448 1448 4.81468 4.17754 +TCONS_00004093 1276 1276 216.853 161.788 +TCONS_00004094 1539 1539 0.716409 0.667691 +TCONS_00004095 2012 2012 3.29853e-4 4.17719e-4 +TCONS_00004096 1942 1942 2.1944 2.67035 +TCONS_00004097 2436 2436 0 0 +TCONS_00004098 2398 2398 0 0 +TCONS_00004099 2411 2411 0 0 +TCONS_00004100 920 920 0 0 +TCONS_00004101 1279 1279 0 0 +TCONS_00004102 1153 1153 4.27731 2.81926 +TCONS_00004103 958 958 44.3782 23.1329 +TCONS_00004104 2913 2913 1.48879 2.83364 +TCONS_00004105 2396 2396 8.20045 12.611 +TCONS_00004106 3934 3934 245.446 644.322 +TCONS_00004107 1822 1822 1.17967 1.33545 +TCONS_00004108 951 951 226.306 116.846 +TCONS_00004109 2235 2235 122.899 175.011 +TCONS_00004110 5191 5191 0 0 +TCONS_00004111 5161 5161 1064.1 3716.39 +TCONS_00004112 5134 5134 518.985 1802.66 +TCONS_00004113 2995 2995 203.036 398.212 +TCONS_00004114 2961 2961 449.64 871.068 +TCONS_00004115 1345 1345 0 0 +TCONS_00004116 1500 1500 196.868 178.053 +TCONS_00004117 1440 1440 10.3258 8.90091 +TCONS_00004118 1383 1383 0 0 +TCONS_00004119 2036 2036 828.687 1063.49 +TCONS_00004120 3391 3391 266.694 597.725 +TCONS_00004121 7931 7931 29.3782 160.133 +TCONS_00004122 4405 4405 35.797 105.89 +TCONS_00004123 3250 3250 48.9202 104.766 +TCONS_00004124 2267 2267 0.771137 1.11556 +TCONS_00004125 2262 2262 1.85004 2.66981 +TCONS_00004126 2238 2238 0 0 +TCONS_00004127 2316 2316 6.40787e-4 9.49189e-4 +TCONS_00004128 2443 2443 42.1422 66.2081 +TCONS_00004129 720 720 2.09752 0.74046 +TCONS_00004130 2190 2190 14.2588 19.8512 +TCONS_00004132 828 828 150.911 64.7962 +TCONS_00004133 1273 1273 5164.57 3842.2 +TCONS_00004134 2805 2805 1379.72 2520.72 +TCONS_00004135 2730 2730 7.74536 13.7399 +TCONS_00004136 2689 2689 72.5627 126.62 +TCONS_00004137 4020 4020 115.523 310.284 +TCONS_00004138 8724 8724 935.482 5623.49 +TCONS_00004139 1534 1534 1290.64 1198.31 +TCONS_00004140 1543 1543 6.13931 5.73918 +TCONS_00004141 1183 1183 2.05169 1.39582 +TCONS_00004142 1830 1830 318.371 362.216 +TCONS_00004143 1151 1151 6403.6 4211.69 +TCONS_00004144 7188 7188 85.2271 419.784 +TCONS_00004145 7105 7105 91.1537 443.626 +TCONS_00004146 1411 1411 29.6043 24.9123 +TCONS_00004148 852 852 5.9838 2.67077 +TCONS_00004149 697 697 5.9481 2.00307 +TCONS_00004150 2339 2339 619.759 928.116 +TCONS_00004151 2534 2534 118.384 193.604 +TCONS_00004152 1368 1368 370.526 300.538 +TCONS_00004153 1805 1805 318.291 356.499 +TCONS_00004154 1262 1262 15.7743 11.6127 +TCONS_00004155 1222 1222 28.8278 20.4072 +TCONS_00004156 252 252 0 0 +TCONS_00004158 1002 1002 2563.8 1416.17 +TCONS_00004160 1840 1840 0 0 +TCONS_00004162 1720 1720 0 0 +TCONS_00004163 1734 1734 0 0 +TCONS_00004164 1855 1855 0 0 +TCONS_00004165 1007 1007 323.091 179.609 +TCONS_00004169 2100 2100 0 0 +TCONS_00004170 2164 2164 0 0 +TCONS_00004172 1844 1844 0 0 +TCONS_00004173 2100 2100 0 0 +TCONS_00004175 1906 1906 8.40609 10.0154 +TCONS_00004176 6978 6978 6.3024 30.1067 +TCONS_00004177 7099 7099 0 0 +TCONS_00004178 3105 3105 4.21435 8.59329 +TCONS_00004179 4316 4316 28.5825 82.7509 +TCONS_00004180 1987 1987 171.447 214.086 +TCONS_00004181 1537 1537 140.236 130.502 +TCONS_00004182 2045 2045 19.0042 24.5098 +TCONS_00004184 1904 1904 0 0 +TCONS_00004185 1798 1798 72.0127 80.3009 +TCONS_00004186 2196 2196 119.533 166.923 +TCONS_00004187 538 538 14576.6 3270.35 +TCONS_00004188 2732 2732 60.9259 108.166 +TCONS_00004189 2749 2749 267.216 477.619 +TCONS_00004190 2564 2564 0 0 +TCONS_00004191 2770 2770 14.3455 25.854 +TCONS_00004192 2745 2745 12.1814 21.7385 +TCONS_00004193 1894 1894 3.76668 4.45583 +TCONS_00004194 1928 1928 7.15413 8.635 +TCONS_00004196 1166 1166 9.40717 6.28691 +TCONS_00004197 905 905 18.4514 8.92679 +TCONS_00004199 2892 2892 0.0104583 0.0197502 +TCONS_00004200 2877 2877 2.60762 4.89679 +TCONS_00004201 2904 2904 0 0 +TCONS_00004202 2907 2907 0 0 +TCONS_00004203 2415 2415 0.704227 1.09245 +TCONS_00004204 892 892 2.54505 1.20791 +TCONS_00004205 1700 1700 16.4022 17.1537 +TCONS_00004206 3946 3946 646.52 1702.67 +TCONS_00004207 1631 1631 4.9664 4.95167 +TCONS_00004208 2008 2008 296.452 374.581 +TCONS_00004209 1984 1984 0 0 +TCONS_00004210 3029 3029 678.675 1347.39 +TCONS_00004211 1559 1559 43.0479 40.7291 +TCONS_00004212 2474 2474 2.50886 3.99657 +TCONS_00004213 3055 3055 12.6211 25.2891 +TCONS_00004214 2975 2975 258.103 502.566 +TCONS_00004215 2963 2963 1.18674 2.30071 +TCONS_00004216 3650 3650 0 0 +TCONS_00004217 2014 2014 0 0 +TCONS_00004219 5368 5368 49.3056 179.416 +TCONS_00004220 574 574 113.84 28.4378 +TCONS_00004221 1122 1122 37.7553 24.0579 +TCONS_00004222 2482 2482 12.4297 19.8706 +TCONS_00004223 1160 1160 178.636 118.626 +TCONS_00004224 4268 4268 105.022 300.491 +TCONS_00004225 1512 1512 162.551 148.395 +TCONS_00004226 1512 1512 32.2978 29.485 +TCONS_00004227 2216 2216 8.86078 12.4989 +TCONS_00004228 2663 2663 62.2622 107.501 +TCONS_00004229 3026 3026 1.75302 3.47661 +TCONS_00004230 2696 2696 61.7647 108.083 +TCONS_00004231 1404 1404 34.5445 28.8986 +TCONS_00004232 2173 2173 114.736 158.357 +TCONS_00004233 1966 1966 35.1185 43.3312 +TCONS_00004234 2746 2746 142.58 254.543 +TCONS_00004235 1912 1912 148.245 177.254 +TCONS_00004236 2029 2029 38.8158 49.6219 +TCONS_00004237 596 596 189.458 50.2743 +TCONS_00004238 2015 2015 10.4776 13.2909 +TCONS_00004239 1171 1171 1.08752 0.730644 +TCONS_00004240 4170 4170 38.7518 108.193 +TCONS_00004241 4395 4395 2.36658 6.98379 +TCONS_00004242 359 359 423.045 41.3968 +TCONS_00004243 1100 1100 3947.4 2453.91 +TCONS_00004244 1097 1097 858.176 531.667 +TCONS_00004245 1081 1081 0 0 +TCONS_00004246 1078 1078 0 0 +TCONS_00004247 1224 1224 368.538 261.409 +TCONS_00004248 3996 3996 568.106 1516.24 +TCONS_00004249 3981 3981 457.459 1216.08 +TCONS_00004250 3694 3694 20.8169 51.1147 +TCONS_00004251 1080 1080 22.6306 13.7484 +TCONS_00004252 1639 1639 20.7477 20.8035 +TCONS_00004253 1143 1143 1668.07 1087.67 +TCONS_00004254 4362 4362 62.7363 183.671 +TCONS_00004255 4014 4014 0 0 +TCONS_00004256 1625 1625 0.615839 0.611401 +TCONS_00004258 3950 3950 3500.67 9229.22 +TCONS_00004259 4091 4091 1632.42 4466.46 +TCONS_00004260 2521 2521 0 0 +TCONS_00004261 3241 3241 162.727 347.454 +TCONS_00004262 2368 2368 7.71609 11.7134 +TCONS_00004263 3381 3381 504.189 1126.44 +TCONS_00004264 5835 5835 93.7024 371.904 +TCONS_00004265 3402 3402 14.9752 33.6796 +TCONS_00004266 941 941 103.514 52.7146 +TCONS_00004267 2535 2535 65.2408 106.741 +TCONS_00004268 2916 2916 36.2088 68.9939 +TCONS_00004269 2888 2888 190.035 358.34 +TCONS_00004270 3481 3481 703.319 1621.06 +TCONS_00004271 3477 3477 369.752 851.183 +TCONS_00004272 15880 15880 862.15 9544.13 +TCONS_00004273 3162 3162 7.06446 14.6895 +TCONS_00004274 3124 3124 200.83 412.201 +TCONS_00004275 2172 2172 0 0 +TCONS_00004276 5751 5751 4.52114 17.6759 +TCONS_00004277 2675 2675 14.6973 25.5009 +TCONS_00004278 4237 4237 451.266 1281.28 +TCONS_00004279 4234 4234 19.6246 55.6787 +TCONS_00004280 4234 4234 144.128 408.919 +TCONS_00004281 4171 4171 2.39165 6.67904 +TCONS_00004282 2314 2314 13.761 20.3646 +TCONS_00004283 2117 2117 0 0 +TCONS_00004284 1241 1241 15.7358 11.3507 +TCONS_00004285 1362 1362 702.903 567.151 +TCONS_00004286 1257 1257 0 0 +TCONS_00004287 1032 1032 2.41922 1.38762 +TCONS_00004288 1575 1575 0 0 +TCONS_00004289 2084 2084 77.8337 102.528 +TCONS_00004290 1629 1629 5122.54 5100.11 +TCONS_00004291 2049 2049 16.0239 20.7114 +TCONS_00004292 2093 2093 16.142 21.3661 +TCONS_00004293 2232 2232 0 0 +TCONS_00004294 2973 2973 48.9661 95.2754 +TCONS_00004295 2401 2401 3.69282 5.69202 +TCONS_00004296 2281 2281 0 0 +TCONS_00004297 1715 1715 8.70014 9.19098 +TCONS_00004298 1045 1045 0.0182659 0.0106448 +TCONS_00004299 1249 1249 0 0 +TCONS_00004301 922 922 0 0 +TCONS_00004302 999 999 0.00138399 7.61546e-4 +TCONS_00004303 968 968 31.5925 16.6915 +TCONS_00004304 888 888 0 0 +TCONS_00004308 1452 1452 0.767025 0.667691 +TCONS_00004309 2467 2467 0 0 +TCONS_00004310 1607 1607 6.94006 6.80174 +TCONS_00004311 2350 2350 113.467 170.804 +TCONS_00004312 2456 2456 365.058 576.885 +TCONS_00004313 2126 2126 5079.3 6841.66 +TCONS_00004314 2135 2135 0 0 +TCONS_00004315 2073 2073 0 0 +TCONS_00004316 2015 2015 13.5558 17.1956 +TCONS_00004317 1812 1812 5.74775 6.46616 +TCONS_00004318 1671 1671 0 0 +TCONS_00004319 1978 1978 0 0 +TCONS_00004320 3776 3776 61.6179 154.871 +TCONS_00004321 3773 3773 60.9828 153.145 +TCONS_00004322 3705 3705 60.0397 147.891 +TCONS_00004323 3834 3834 73.0323 186.555 +TCONS_00004324 3063 3063 144.58 290.513 +TCONS_00004325 3139 3139 53.0419 109.43 +TCONS_00004326 4775 4775 113.563 365.63 +TCONS_00004327 4317 4317 214.426 620.948 +TCONS_00004328 3921 3921 40.3181 105.469 +TCONS_00004329 3797 3797 55.7553 140.964 +TCONS_00004330 1860 1860 522.544 605.589 +TCONS_00004331 2544 2544 18.1978 29.8892 +TCONS_00004332 2537 2537 15.3445 25.127 +TCONS_00004333 927 927 141.789 70.8027 +TCONS_00004334 5160 5160 14.2089 49.6149 +TCONS_00004335 4949 4949 0 0 +TCONS_00004336 5786 5786 254.426 1001 +TCONS_00004337 5850 5850 0 0 +TCONS_00004338 6175 6175 293.607 1235.89 +TCONS_00004340 6283 6283 137.933 591.14 +TCONS_00004342 1915 1915 0 0 +TCONS_00004343 2088 2088 41.5518 54.8527 +TCONS_00004344 5241 5241 8.24683 29.2686 +TCONS_00004345 5087 5087 0 0 +TCONS_00004346 5096 5096 93.5654 322.479 +TCONS_00004347 5000 5000 3.57736 12.0868 +TCONS_00004348 5136 5136 425.45 1478.37 +TCONS_00004349 2198 2198 29.1022 40.6809 +TCONS_00004350 2326 2326 0.44885 0.668048 +TCONS_00004351 2057 2057 56.9186 73.8911 +TCONS_00004352 3348 3348 15.3114 33.8511 +TCONS_00004353 3300 3300 36.2405 78.8922 +TCONS_00004354 3333 3333 96.0602 211.355 +TCONS_00004355 3494 3494 23.2555 53.8145 +TCONS_00004356 3639 3639 54.1566 130.873 +TCONS_00004357 4462 4462 520.674 1561.17 +TCONS_00004359 4264 4264 40.118 114.673 +TCONS_00004360 4498 4498 2.51869 7.61607 +TCONS_00004361 2089 2089 4.58538 6.05642 +TCONS_00004362 2126 2126 188.206 253.508 +TCONS_00004363 2411 2411 58.1801 90.0886 +TCONS_00004364 3586 3586 176.834 420.704 +TCONS_00004365 14287 14287 730.281 7261.91 +TCONS_00004366 14290 14290 118.195 1175.58 +TCONS_00004367 846 846 0 0 +TCONS_00004368 3903 3903 64.1217 166.921 +TCONS_00004369 3883 3883 7.083e-4 0.00183383 +TCONS_00004370 510 510 0 0 +TCONS_00004371 8653 8653 107.246 639.306 +TCONS_00004372 8587 8587 350.665 2074 +TCONS_00004373 3921 3921 1.34987 3.53115 +TCONS_00004374 2834 2834 116.373 214.996 +TCONS_00004375 1637 1637 5.74673 5.75407 +TCONS_00004376 2740 2740 223.501 398.062 +TCONS_00004377 2731 2731 1127.58 2001.07 +TCONS_00004378 2565 2565 1305.74 2164.03 +TCONS_00004379 2574 2574 231.398 384.971 +TCONS_00004380 2451 2451 6.58024 10.3752 +TCONS_00004381 2617 2617 9.29533 15.747 +TCONS_00004382 2388 2388 106.963 163.887 +TCONS_00004383 4314 4314 15.9207 46.0705 +TCONS_00004384 4492 4492 0 0 +TCONS_00004385 1586 1586 1.82702 1.76348 +TCONS_00004386 540 540 1.06121 0.239589 +TCONS_00004387 738 738 0 0 +TCONS_00004388 646 646 0 0 +TCONS_00004389 2552 2552 31.6687 52.1938 +TCONS_00004390 2791 2791 78.0578 141.837 +TCONS_00004391 4088 4088 77.2774 211.274 +TCONS_00004392 4129 4129 543.731 1502.3 +TCONS_00004394 1768 1768 0 0 +TCONS_00004395 697 697 13.8243 4.65544 +TCONS_00004396 2041 2041 1.55748 2.00429 +TCONS_00004397 5192 5192 87.9633 309.141 +TCONS_00004398 1287 1287 3618.98 2728.17 +TCONS_00004399 1547 1547 170.21 159.598 +TCONS_00004400 1074 1074 58.2416 35.1355 +TCONS_00004401 1607 1607 31.5673 30.9381 +TCONS_00004402 1631 1631 4.37347 4.3605 +TCONS_00004403 1553 1553 25.0089 23.5557 +TCONS_00004404 1566 1566 410.122 390.06 +TCONS_00004405 1676 1676 37.3476 38.4249 +TCONS_00004406 1824 1824 33.4016 37.8598 +TCONS_00004408 1244 1244 6.57668 4.75791 +TCONS_00004409 934 934 13.6156 6.86636 +TCONS_00004410 1607 1607 277.546 272.014 +TCONS_00004412 1394 1394 26.0146 21.5789 +TCONS_00004413 2160 2160 11.2444 15.4161 +TCONS_00004414 1411 1411 7.51267 6.3219900000000004 +TCONS_00004415 2054 2054 8.6179 11.1694 +TCONS_00004416 2077 2077 130.669 171.48 +TCONS_00004418 953 953 13.1216 6.79351 +TCONS_00004419 1774 1774 0 0 +TCONS_00004420 2239 2239 370.852 529.151 +TCONS_00004421 1842 1842 492.533 564.54 +TCONS_00004422 2924 2924 866.093 1655.19 +TCONS_00004423 2686 2686 0.431717 0.752418 +TCONS_00004424 4859 4859 0.217532 0.713293 +TCONS_00004425 5799 5799 0.883374 3.48362 +TCONS_00004426 3940 3940 0 0 +TCONS_00004427 5094 5094 1.08287 3.73065 +TCONS_00004428 2703 2703 2.26131 3.96831 +TCONS_00004429 2798 2798 3.68503 6.71422 +TCONS_00004431 2725 2725 2.96653e-4 5.25201e-4 +TCONS_00004432 4461 4461 0 0 +TCONS_00004433 4548 4548 39.3861 120.489 +TCONS_00004434 4417 4417 29.2748 86.8454 +TCONS_00004435 4424 4424 15.5536 46.2177 +TCONS_00004436 686 686 140.56 46.2416 +TCONS_00004439 2497 2497 6.58664 10.5995 +TCONS_00004440 2827 2827 7.43093 13.6917 +TCONS_00004441 2683 2683 122.443 213.14 +TCONS_00004442 2803 2803 1.3733 2.50705 +TCONS_00004443 1653 1653 5.04101 5.10446
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/salmon_cond2_rep2.sf Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,1093 @@ +Name Length EffectiveLength TPM NumReads +TCONS_00000001 1652 1652 0 0 +TCONS_00000002 1488 1488 0.621918 0.654207 +TCONS_00000003 1595 1595 0 0 +TCONS_00000006 78 78 835811 2.8349 +TCONS_00000007 2750 2750 400.032 715.295 +TCONS_00000008 4369 4369 321.749 943.567 +TCONS_00000009 4272 4272 0.202507 0.579991 +TCONS_00000010 937 937 0 0 +TCONS_00000012 1584 1584 100259 96630.9 +TCONS_00000013 694 694 7026.17 2351.22 +TCONS_00000015 1023 1023 33690.7 19110 +TCONS_00000016 510 510 0 0 +TCONS_00000017 854 854 0 0 +TCONS_00000018 701 701 92.5542 31.4301 +TCONS_00000019 517 517 0 0 +TCONS_00000020 1543 1543 82.8399 77.4408 +TCONS_00000021 2682 2682 29.7021 51.6823 +TCONS_00000022 3043 3043 32.1328 64.1123 +TCONS_00000023 490 490 0 0 +TCONS_00000024 2554 2554 4.23036 6.97813 +TCONS_00000025 2121 2121 0 0 +TCONS_00000026 2560 2560 200.885 332.22 +TCONS_00000027 955 955 157.065 81.5396 +TCONS_00000028 2003 2003 232.477 292.924 +TCONS_00000029 1149 1149 188.186 123.505 +TCONS_00000030 2398 2398 17.3996 26.7824 +TCONS_00000031 2554 2554 7.16309 11.8158 +TCONS_00000032 2293 2293 0 0 +TCONS_00000033 662 662 1123.84 350.655 +TCONS_00000034 7319 7319 1849.52 9281.01 +TCONS_00000035 673 673 2.45178 0.784059 +TCONS_00000036 971 971 33.0539 17.5337 +TCONS_00000037 1616 1616 1.32641 1.30841 +TCONS_00000041 2259 2259 13.599 19.596 +TCONS_00000042 2278 2278 0.00559733 0.00814088 +TCONS_00000043 2111 2111 5.89099 7.8725 +TCONS_00000044 2790 2790 267.968 486.73 +TCONS_00000045 3054 3054 2.64622 5.30039 +TCONS_00000046 2960 2960 18.508 35.8418 +TCONS_00000047 2590 2590 33.1576 55.5385 +TCONS_00000048 2684 2684 3.56635 6.21057 +TCONS_00000049 2530 2530 28.7413 46.9221 +TCONS_00000050 1239 1239 730.129 525.632 +TCONS_00000051 1181 1181 90.0279 61.1212 +TCONS_00000052 1932 1932 14.5404 17.5913 +TCONS_00000053 2192 2192 178.383 248.599 +TCONS_00000054 2558 2558 1.97961 3.27103 +TCONS_00000055 1747 1747 213.471 230.344 +TCONS_00000056 1594 1594 104.682 101.633 +TCONS_00000057 1741 1741 254.603 273.647 +TCONS_00000058 491 491 78.7253 15.0468 +TCONS_00000059 2141 2141 91.5793 124.325 +TCONS_00000060 2536 2536 447.23 732.031 +TCONS_00000061 3859 3859 62.2307 160.063 +TCONS_00000062 2432 2432 345.07 539.444 +TCONS_00000063 1939 1939 107.648 130.768 +TCONS_00000064 2667 2667 175.108 302.835 +TCONS_00000065 1170 1170 413.658 277.622 +TCONS_00000066 2611 2611 55.8828 94.4326 +TCONS_00000067 2467 2467 566.011 898.843 +TCONS_00000068 2329 2329 786.459 1172.2 +TCONS_00000069 2616 2616 23.0799 39.0827 +TCONS_00000070 1048 1048 15.6591 9.15889 +TCONS_00000071 3243 3243 0.0178632 0.0381668 +TCONS_00000072 3201 3201 73.0075 153.821 +TCONS_00000073 3231 3231 9.6167 20.4656 +TCONS_00000074 3026 3026 102.204 202.691 +TCONS_00000076 2930 2930 24.7046 47.3178 +TCONS_00000077 2890 2890 30.1741 56.9405 +TCONS_00000078 3311 3311 8.60342 18.7958 +TCONS_00000079 2590 2590 94.6701 158.571 +TCONS_00000080 2308 2308 0 0 +TCONS_00000081 585 585 246.925 63.6034 +TCONS_00000082 1239 1239 34.402 24.7666 +TCONS_00000083 1306 1306 30.076 23.0767 +TCONS_00000084 905 905 0 0 +TCONS_00000085 850 850 12.3046 5.47456 +TCONS_00000086 906 906 106.944 51.8153 +TCONS_00000087 848 848 20.3516 9.02603 +TCONS_00000088 1808 1808 69.8784 78.4149 +TCONS_00000089 921 921 3.96399 1.96262 +TCONS_00000090 1101 1101 31.5351 19.6262 +TCONS_00000091 1925 1925 42.8944 51.6823 +TCONS_00000092 2324 2324 828.909 1232.54 +TCONS_00000093 2112 2112 0 0 +TCONS_00000094 2032 2032 0 0 +TCONS_00000095 2009 2009 68.5732 86.694 +TCONS_00000096 1745 1745 18.6306 20.0769 +TCONS_00000097 1212 1212 1.75108 1.22721 +TCONS_00000098 1849 1849 22.152 25.5002 +TCONS_00000099 1859 1859 16.8841 19.5555 +TCONS_00000100 2089 2089 54.3286 71.7578 +TCONS_00000101 1943 1943 113.906 138.692 +TCONS_00000102 5706 5706 709.915 2752.9 +TCONS_00000103 3093 3093 777.628 1579.03 +TCONS_00000104 3203 3203 43.3036 91.2986 +TCONS_00000105 4834 4834 1.93379 6.30677 +TCONS_00000106 3951 3951 1.64288e-4 4.33247e-4 +TCONS_00000107 3939 3939 4.11107e-4 0.00108065 +TCONS_00000108 4854 4854 0 0 +TCONS_00000109 5564 5564 1.10103 4.15902 +TCONS_00000110 2241 2241 0 0 +TCONS_00000111 722 722 1.6725 0.853653 +TCONS_00000112 1671 1671 1.24167 1.2731 +TCONS_00000113 4460 4460 0 0 +TCONS_00000114 1704 1704 0 0 +TCONS_00000115 1561 1561 3.73868 4.12573 +TCONS_00000116 2709 2709 425.876 749.163 +TCONS_00000117 2763 2763 64.833 116.523 +TCONS_00000118 2677 2677 355.202 616.805 +TCONS_00000119 2697 2697 11.1787 19.5698 +TCONS_00000120 2601 2601 25.3814 42.7108 +TCONS_00000121 2598 2598 0 0 +TCONS_00000122 2571 2571 9.42276 15.6564 +TCONS_00000124 8659 8659 4.36491 26.0383 +TCONS_00000125 8716 8716 0 0 +TCONS_00000126 8662 8662 1.11806 6.67201 +TCONS_00000127 8719 8719 0 0 +TCONS_00000128 8720 8720 0 0 +TCONS_00000129 2902 2902 222.463 421.69 +TCONS_00000130 2209 2209 53.9465 75.8295 +TCONS_00000131 2217 2217 81.1706 114.556 +TCONS_00000132 1403 1403 9.57497 8.00328 +TCONS_00000133 1817 1817 5.31411 5.99711 +TCONS_00000134 2425 2425 516.786 805.328 +TCONS_00000135 2248 2248 0 0 +TCONS_00000136 1904 1904 0 0 +TCONS_00000137 2845 2845 61.5073 114.112 +TCONS_00000138 1585 1585 5.68473 5.48302 +TCONS_00000140 2728 2728 9.70256 17.1982 +TCONS_00000141 2673 2673 2.55616 4.43152 +TCONS_00000142 1091 1091 1.20016 0.738447 +TCONS_00000144 1894 1894 0 0 +TCONS_00000145 2174 2174 5.68504 7.85048 +TCONS_00000146 545 545 105.561 24.2056 +TCONS_00000147 760 760 0 0 +TCONS_00000149 956 956 12.6736 6.58841 +TCONS_00000151 3027 3027 63.4016 125.783 +TCONS_00000152 3077 3077 0 0 +TCONS_00000154 3151 3151 8.54099 17.6933 +TCONS_00000156 3196 3196 19.3223 40.6422 +TCONS_00000157 3099 3099 14.4648 29.4331 +TCONS_00000158 1950 1950 0 0 +TCONS_00000159 1279 1279 12.2413 9.15889 +TCONS_00000160 1055 1055 7.76387 4.57945 +TCONS_00000163 2070 2070 23.0308 30.1099 +TCONS_00000164 2922 2922 54.1179 103.348 +TCONS_00000165 4625 4625 21.4315 66.7291 +TCONS_00000166 3128 3128 26.3344 54.1255 +TCONS_00000167 2388 2388 16.9602 25.9862 +TCONS_00000168 3171 3171 0 0 +TCONS_00000169 3129 3129 98.5801 202.683 +TCONS_00000170 3557 3557 1.64609 3.88245 +TCONS_00000171 3426 3426 1.38415 3.13645 +TCONS_00000172 3137 3137 0 0 +TCONS_00000173 1293 1293 18.0531 13.6859 +TCONS_00000174 3963 3963 27.9095 73.8376 +TCONS_00000175 1412 1412 18.3447 15.4502 +TCONS_00000176 1421 1421 22.818 19.3629 +TCONS_00000177 1248 1248 150.428 109.253 +TCONS_00000178 687 687 1480.3 488.038 +TCONS_00000179 3530 3530 23.5695 55.1408 +TCONS_00000180 1883 1883 184.103 216.355 +TCONS_00000181 2698 2698 1.24375 2.17822 +TCONS_00000182 1936 1936 0.239069 0.289907 +TCONS_00000183 1293 1293 0.196149 0.148699 +TCONS_00000184 2364 2364 0 0 +TCONS_00000185 2257 2257 26.1846 37.6948 +TCONS_00000186 2337 2337 62.2135 93.0795 +TCONS_00000187 2265 2265 176.306 254.803 +TCONS_00000188 2483 2483 72.6541 116.199 +TCONS_00000189 3669 3669 676.812 1649.91 +TCONS_00000190 1363 1363 149.632 120.839 +TCONS_00000191 1270 1270 85.9191 63.7375 +TCONS_00000192 2094 2094 23.1773 30.6948 +TCONS_00000193 722 722 1374.3 487.094 +TCONS_00000194 8441 8441 9.77862 56.8261 +TCONS_00000195 5417 5417 28.5975 105.053 +TCONS_00000196 5158 5158 0 0 +TCONS_00000197 3979 3979 0 0 +TCONS_00000198 2204 2204 535.176 750.375 +TCONS_00000199 1523 1523 10.0998 9.29878 +TCONS_00000200 3524 3524 0 0 +TCONS_00000201 3414 3414 64.2675 145.084 +TCONS_00000202 6251 6251 7.89057 33.6381 +TCONS_00000203 6278 6278 66.8942 286.451 +TCONS_00000204 6336 6336 4.34858 18.7996 +TCONS_00000205 1476 1476 24.8263 22.0324 +TCONS_00000206 902 902 6026.58 2902.88 +TCONS_00000207 842 842 50.3161 22.102 +TCONS_00000208 960 960 2467.95 1289.96 +TCONS_00000209 2323 2323 11.6617 17.3321 +TCONS_00000210 2400 2400 29.4993 45.4486 +TCONS_00000211 1756 1756 11.7705 12.7757 +TCONS_00000214 9113 9113 104.797 658.786 +TCONS_00000215 3115 3115 12.3267 25.222 +TCONS_00000216 2961 2961 83.2243 161.227 +TCONS_00000217 1460 1460 252.129 220.902 +TCONS_00000218 1536 1536 12.1962 11.3409 +TCONS_00000219 3848 3848 173.059 443.778 +TCONS_00000220 3735 3735 245.458 609.822 +TCONS_00000221 5410 5410 249.013 913.514 +TCONS_00000222 5336 5336 181.788 657.388 +TCONS_00000223 5482 5482 28.8094 107.155 +TCONS_00000224 3780 3780 39.2591 98.7852 +TCONS_00000225 654 654 264.792 81.1216 +TCONS_00000227 5515 5515 1079.45 4040.13 +TCONS_00000228 5902 5902 16.7798 67.3935 +TCONS_00000229 5548 5548 0 0 +TCONS_00000230 5400 5400 4.88956 17.903 +TCONS_00000231 1035 1035 0 0 +TCONS_00000232 2038 2038 0 0 +TCONS_00000233 1574 1574 4.76177 4.55577 +TCONS_00000234 7662 7662 202.645 1066.02 +TCONS_00000235 10579 10579 325.991 2387.13 +TCONS_00000236 10667 10667 0 0 +TCONS_00000237 8667 8667 0 0 +TCONS_00000240 8703 8703 85.2765 511.358 +TCONS_00000241 1936 1936 6785.75 8228.74 +TCONS_00000243 1870 1870 341.384 398.051 +TCONS_00000244 2051 2051 4.73263 6.12377 +TCONS_00000245 1235 1235 74.8244 53.6558 +TCONS_00000246 1467 1467 0 0 +TCONS_00000247 1400 1400 7.26745 6.05911 +TCONS_00000248 1427 1427 148.64 126.763 +TCONS_00000249 1184 1184 32.618 22.214 +TCONS_00000250 309 309 83.5415 5.22651 +TCONS_00000251 1132 1132 8.28269 5.33633 +TCONS_00000252 1125 1125 6.0946 3.89644 +TCONS_00000253 1924 1924 601.09 723.813 +TCONS_00000256 1795 1795 0 0 +TCONS_00000258 4216 4216 1977.36 5584.96 +TCONS_00000259 4052 4052 0 0 +TCONS_00000260 2237 2237 0.917903 1.30841 +TCONS_00000261 3653 3653 300.08 728.132 +TCONS_00000262 759 759 8.98698 3.42034 +TCONS_00000263 5213 5213 63.7235 224.898 +TCONS_00000264 2837 2837 0 0 +TCONS_00000265 2933 2933 18.315 35.1183 +TCONS_00000266 781 781 149.732 59.315 +TCONS_00000267 3319 3319 161.7 354.179 +TCONS_00000268 2947 2947 68.2064 131.458 +TCONS_00000269 2822 2822 174.3 320.537 +TCONS_00000270 2918 2918 11.9872 22.8579 +TCONS_00000271 2688 2688 0 0 +TCONS_00000272 1547 1547 22.6755 21.2617 +TCONS_00000273 1773 1773 371.39 407.571 +TCONS_00000274 3728 3728 194.72 482.805 +TCONS_00000275 1279 1279 245.723 183.848 +TCONS_00000276 1258 1258 71.2541 52.2541 +TCONS_00000277 1182 1182 1096.88 745.466 +TCONS_00000278 1161 1161 341.094 226.751 +TCONS_00000279 1126 1126 0 0 +TCONS_00000280 726 726 3.66236 1.30841 +TCONS_00000281 2663 2663 2.55177 4.40587 +TCONS_00000282 1738 1738 2.85302 3.06037 +TCONS_00000283 1202 1202 1.1054 0.766884 +TCONS_00000284 1077 1077 9.0877 5.50163 +TCONS_00000285 1041 1041 0 0 +TCONS_00000286 1194 1194 8.22662 5.66078 +TCONS_00000287 5643 5643 316.026 1211.41 +TCONS_00000288 5627 5627 0 0 +TCONS_00000290 837 837 0 0 +TCONS_00000291 957 957 0 0 +TCONS_00000292 660 660 2.19742 0.682521 +TCONS_00000293 467 467 0 0 +TCONS_00000295 934 934 0 0 +TCONS_00000296 3003 3003 1012.93 1992.39 +TCONS_00000297 3144 3144 0 0 +TCONS_00000298 4676 4676 862.533 2716.68 +TCONS_00000299 4531 4531 115.693 352.534 +TCONS_00000300 1588 1588 1221.6 1180.84 +TCONS_00000301 3684 3684 442.502 1083.41 +TCONS_00000302 3593 3593 19.21 45.7975 +TCONS_00000303 2359 2359 9.70689 14.6738 +TCONS_00000304 2151 2151 0 0 +TCONS_00000305 3674 3674 33.0191 80.6097 +TCONS_00000306 3574 3574 6.01122 14.2502 +TCONS_00000307 3561 3561 0 0 +TCONS_00000308 16326 16326 0.00188256 0.0214338 +TCONS_00000309 16251 16251 64.1432 726.898 +TCONS_00000310 13946 13946 59.1542 573.969 +TCONS_00000311 4062 4062 0 0 +TCONS_00000312 5671 5671 22.971 88.5086 +TCONS_00000313 4219 4219 3.98354 11.2598 +TCONS_00000314 152 152 585.268 0.654207 +TCONS_00000315 1574 1574 1.36757 1.30841 +TCONS_00000316 3832 3832 0.406568 1.03797 +TCONS_00000317 4049 4049 8.56032 23.1677 +TCONS_00000318 897 897 0 0 +TCONS_00000319 1018 1018 0 0 +TCONS_00000320 1783 1783 1.5570600000000001 1.96262 +TCONS_00000321 1606 1606 0 0 +TCONS_00000325 1855 1855 0 0 +TCONS_00000326 1863 1863 0 0 +TCONS_00000330 1863 1863 0 0 +TCONS_00000331 1557 1557 0.594357 0.654207 +TCONS_00000333 2804 2804 848.737 1550.02 +TCONS_00000334 2810 2810 865.048 1583.48 +TCONS_00000335 2699 2699 10.5389 18.4645 +TCONS_00000339 2700 2700 0 0 +TCONS_00000340 7456 7456 10.871 55.6043 +TCONS_00000341 7955 7955 22.6164 123.659 +TCONS_00000342 2129 2129 1.82725 2.46513 +TCONS_00000343 2020 2020 0 0 +TCONS_00000344 6272 6272 119.963 513.19 +TCONS_00000345 2301 2301 1.56973 2.30858 +TCONS_00000347 4052 4052 0.540913 1.46508 +TCONS_00000348 3905 3905 37.4761 97.6105 +TCONS_00000349 3833 3833 0 0 +TCONS_00000350 6021 6021 12.1352 49.7602 +TCONS_00000351 3842 3842 21.2858 54.4931 +TCONS_00000352 3643 3643 0 0 +TCONS_00000353 3653 3653 0 0 +TCONS_00000354 3393 3393 89.5863 200.911 +TCONS_00000355 4528 4528 3.02987 9.22603 +TCONS_00000356 2015 2015 0.0095909 0.012166 +TCONS_00000357 1942 1942 97.393 118.517 +TCONS_00000358 1879 1879 0 0 +TCONS_00000359 1911 1911 62.1958 74.3225 +TCONS_00000360 1984 1984 83.0303 103.504 +TCONS_00000361 5090 5090 6.97666 24.0159 +TCONS_00000362 3506 3506 2.24494 5.21396 +TCONS_00000365 1378 1378 0 0 +TCONS_00000367 2419 2419 498.411 774.581 +TCONS_00000368 899 899 0 0 +TCONS_00000369 753 753 0 0 +TCONS_00000371 922 922 1.31945 0.654207 +TCONS_00000372 2314 2314 9.45551 13.9929 +TCONS_00000373 6023 6023 132.507 543.53 +TCONS_00000374 5838 5838 0.00782069 0.0310568 +TCONS_00000375 2927 2927 2.65441 5.07847 +TCONS_00000376 1462 1462 1.34743 1.18245 +TCONS_00000377 1759 1759 274.773 298.822 +TCONS_00000379 1853 1853 231.542 267.193 +TCONS_00000380 2770 2770 288.583 520.094 +TCONS_00000381 4120 4120 780.441 2151.36 +TCONS_00000382 3070 3070 3.55212 7.15508 +TCONS_00000383 1741 1741 5.51644 5.92906 +TCONS_00000384 1518 1518 37.805 34.673 +TCONS_00000385 3493 3493 39.3861 91.1138 +TCONS_00000386 3349 3349 773.697 1711.07 +TCONS_00000388 1524 1524 30.8531 28.4278 +TCONS_00000389 2792 2792 165.473 300.794 +TCONS_00000390 12227 12227 229.165 1945.09 +TCONS_00000391 11900 11900 159.167 1314.17 +TCONS_00000393 3059 3059 10.4605 20.9894 +TCONS_00000395 2532 2532 14.2752 23.3255 +TCONS_00000396 2406 2406 11.0813 17.1196 +TCONS_00000397 2535 2535 7.61786 12.4636 +TCONS_00000398 903 903 12.5589 6.05827 +TCONS_00000399 1097 1097 0 0 +TCONS_00000401 2128 2128 64.0989 86.4298 +TCONS_00000402 1498 1498 0 0 +TCONS_00000403 3583 3583 511.48 1215.77 +TCONS_00000404 3580 3580 580.974 1379.73 +TCONS_00000405 3633 3633 227.694 549.271 +TCONS_00000406 1342 1342 0 0 +TCONS_00000407 2079 2079 529.708 695.899 +TCONS_00000408 2003 2003 6.37068 8.02715 +TCONS_00000409 2001 2001 0 0 +TCONS_00000410 2415 2415 11.5352 17.8942 +TCONS_00000411 1397 1397 1.13535 0.94417 +TCONS_00000412 1586 1586 8.92013 8.60991 +TCONS_00000413 2635 2635 0 0 +TCONS_00000414 1403 1403 8.859 7.40483 +TCONS_00000415 1748 1748 7.8994 8.52935 +TCONS_00000416 2736 2736 0.192114 0.341617 +TCONS_00000417 2413 2413 77.5931 120.258 +TCONS_00000418 2026 2026 41.6194 53.1178 +TCONS_00000419 1668 1668 2.65369 2.71523 +TCONS_00000420 6656 6656 414.925 1887.65 +TCONS_00000421 2614 2614 32.4887 54.9694 +TCONS_00000422 6137 6137 91.2537 381.667 +TCONS_00000423 2424 2424 60.1366 93.6708 +TCONS_00000424 3847 3847 0.752634 1.92945 +TCONS_00000425 2600 2600 2.91814 4.90847 +TCONS_00000427 2455 2455 1.27794e-4 2.01857e-4 +TCONS_00000428 2086 2086 3.24822 4.28339 +TCONS_00000429 3186 3186 18.4124 38.5982 +TCONS_00000430 1551 1551 3.30918 3.11222 +TCONS_00000431 2265 2265 2.82588 4.08406 +TCONS_00000432 2347 2347 0.394296 0.654207 +TCONS_00000433 3667 3667 48.1699 117.359 +TCONS_00000434 4493 4493 64.0644 193.493 +TCONS_00000435 4260 4260 0 0 +TCONS_00000436 4245 4245 495.497 1409.67 +TCONS_00000437 2011 2011 3.17249 4.01532 +TCONS_00000438 4599 4599 25.4604 78.8055 +TCONS_00000439 3481 3481 11.2922 26.027 +TCONS_00000440 3691 3691 0 0 +TCONS_00000441 3075 3075 4.68047 9.44447 +TCONS_00000442 2261 2261 47.962 69.1806 +TCONS_00000443 1859 1859 15.8155 18.3178 +TCONS_00000444 1943 1943 408.998 497.995 +TCONS_00000445 1884 1884 3.77191 4.43535 +TCONS_00000446 1111 1111 23.9054 15.0468 +TCONS_00000447 5055 5055 189.506 647.651 +TCONS_00000448 4093 4093 0.00495709 0.0135701 +TCONS_00000449 2259 2259 0.0652279 0.0939927 +TCONS_00000450 2253 2253 0.389918 0.560214 +TCONS_00000451 6052 6052 0 0 +TCONS_00000452 2272 2272 978.03 1418.32 +TCONS_00000453 1884 1884 226.119 265.891 +TCONS_00000454 1642 1642 4.05564 4.07515 +TCONS_00000455 2254 2254 28.6665 41.2069 +TCONS_00000456 1611 1611 0 0 +TCONS_00000457 1740 1740 83.6573 89.8556 +TCONS_00000458 2298 2298 11.9692 17.5775 +TCONS_00000459 2589 2589 583.308 976.619 +TCONS_00000460 2025 2025 188.164 240.016 +TCONS_00000461 2054 2054 2.55873 3.31629 +TCONS_00000462 2088 2088 0 0 +TCONS_00000463 2021 2021 11.2322 14.2956 +TCONS_00000464 1983 1983 25.7298 32.0561 +TCONS_00000465 6506 6506 148.558 660.095 +TCONS_00000466 2793 2793 0 0 +TCONS_00000467 2581 2581 0 0 +TCONS_00000468 1893 1893 0 0 +TCONS_00000469 2719 2719 0.680701 1.30841 +TCONS_00000470 2971 2971 21.1976 41.215 +TCONS_00000471 3743 3743 14.0996 35.1092 +TCONS_00000472 4475 4475 4.93388 14.8389 +TCONS_00000473 4419 4419 0 0 +TCONS_00000474 2908 2908 0.91282 1.73417 +TCONS_00000476 2581 2581 36.0699 60.187 +TCONS_00000477 957 957 161.036 83.8289 +TCONS_00000478 1078 1078 3.85614 2.33721 +TCONS_00000479 787 787 20.0801 8.0397 +TCONS_00000480 2659 2659 350.994 605.031 +TCONS_00000481 1658 1658 125.655 127.681 +TCONS_00000482 2437 2437 6.26305 9.8131 +TCONS_00000483 105 105 52475.4 7.85048 +TCONS_00000484 3765 3765 9.81018 24.5807 +TCONS_00000485 4294 4294 45.0799 129.812 +TCONS_00000486 3729 3729 0 0 +TCONS_00000487 3555 3555 0 0 +TCONS_00000488 2595 2595 4801.13 8058.79 +TCONS_00000489 2554 2554 10.0504 16.5785 +TCONS_00000490 2430 2430 236.208 368.928 +TCONS_00000491 2314 2314 140.049 207.254 +TCONS_00000492 2557 2557 0 0 +TCONS_00000493 4012 4012 25.1391 67.3789 +TCONS_00000494 987 987 12.1092 6.56039 +TCONS_00000495 1001 1001 0 0 +TCONS_00000498 1100 1100 9.31318 5.78956 +TCONS_00000499 1036 1036 441.674 254.585 +TCONS_00000501 1512 1512 5.72637 5.22766 +TCONS_00000502 2293 2293 97.557 142.924 +TCONS_00000503 2167 2167 9.25552 12.7352 +TCONS_00000504 2094 2094 1468.87 1945.3 +TCONS_00000505 2302 2302 0 0 +TCONS_00000506 2343 2343 7.65519 11.4856 +TCONS_00000507 8992 8992 4.88506 30.2912 +TCONS_00000508 8704 8704 61.2754 367.48 +TCONS_00000509 8368 8368 57.736 332.539 +TCONS_00000510 2160 2160 13.2037 18.1024 +TCONS_00000511 1844 1844 91.3447 104.828 +TCONS_00000512 4996 4996 22.6273 76.3869 +TCONS_00000519 4032 4032 124.967 336.708 +TCONS_00000520 4868 4868 15.3499 50.4303 +TCONS_00000521 4865 4865 196.412 644.872 +TCONS_00000522 4629 4629 0 0 +TCONS_00000523 3565 3565 7.19442 17.0094 +TCONS_00000524 3035 3035 3008.93 5986.48 +TCONS_00000525 3107 3107 1059.56 2161.99 +TCONS_00000526 887 887 5.98178 2.81787 +TCONS_00000527 2815 2815 4.52762 8.30387 +TCONS_00000528 2178 2178 0.945571 1.30841 +TCONS_00000529 1779 1779 0 0 +TCONS_00000530 1625 1625 0 0 +TCONS_00000531 607 607 7623.06 2082.12 +TCONS_00000532 604 604 972.076 263.446 +TCONS_00000533 594 594 76262.2 20129 +TCONS_00000534 1975 1975 165.35 205.071 +TCONS_00000535 4942 4942 494.345 1649.97 +TCONS_00000536 1620 1620 1041.47 1030.28 +TCONS_00000537 1576 1576 103.881 99.5341 +TCONS_00000538 1686 1686 0.192633 0.199552 +TCONS_00000539 1728 1728 513.376 547.057 +TCONS_00000540 1622 1622 624.445 618.62 +TCONS_00000541 1590 1590 1505.82 1457.71 +TCONS_00000542 2412 2412 850.301 1317.25 +TCONS_00000544 2799 2799 22.9664 41.8617 +TCONS_00000545 2699 2699 0.0043104 0.00755199 +TCONS_00000546 2512 2512 0 0 +TCONS_00000547 1814 1814 0 0 +TCONS_00000548 1732 1732 55.5746 59.3779 +TCONS_00000549 5425 5425 71.4974 263.049 +TCONS_00000550 5535 5535 5.31471 19.9669 +TCONS_00000551 2736 2736 4.27763 7.60648 +TCONS_00000552 1697 1697 97.129 101.373 +TCONS_00000553 1413 1413 0 0 +TCONS_00000554 1269 1269 6.61494 4.9025 +TCONS_00000555 1271 1271 12.3708 9.18577 +TCONS_00000556 1097 1097 6.87415 4.25876 +TCONS_00000557 3953 3953 2.47943 6.54207 +TCONS_00000558 3933 3933 757.939 1989.13 +TCONS_00000559 3969 3969 0 0 +TCONS_00000560 2393 2393 48.7518 74.8691 +TCONS_00000561 2510 2510 1019.86 1650.58 +TCONS_00000562 1489 1489 76.6175 68.6991 +TCONS_00003803 842 842 459.054 201.646 +TCONS_00003804 2411 2411 0 0 +TCONS_00003807 1745 1745 0.0136576 0.0147178 +TCONS_00003808 1745 1745 0 0 +TCONS_00003809 1768 1768 77.9198 85.2353 +TCONS_00003810 1636 1636 19.9932 20.0046 +TCONS_00003812 3181 3181 19.318 40.4283 +TCONS_00003813 3517 3517 48.0267 111.917 +TCONS_00003814 1189 1189 0 0 +TCONS_00003816 1134 1134 0 0 +TCONS_00003817 1097 1097 68.4073 42.3805 +TCONS_00003818 717 717 286.708 100.605 +TCONS_00003819 1577 1577 98.9784 94.9065 +TCONS_00003820 1148 1148 50.7712 33.2849 +TCONS_00003821 1022 1022 25.5907 14.4974 +TCONS_00003822 806 806 11.6002 4.80034 +TCONS_00003824 1129 1129 25.4692 16.3552 +TCONS_00003825 2373 2373 2.57971 3.92524 +TCONS_00003826 1390 1390 662.914 548.007 +TCONS_00003827 937 937 0 0 +TCONS_00003828 4272 4272 22.17 63.496 +TCONS_00003829 4295 4295 281.992 812.223 +TCONS_00003830 4812 4812 205.926 668.394 +TCONS_00003831 78 78 835811 2.8349 +TCONS_00003833 78 78 835811 2.8349 +TCONS_00003835 683 683 568.121 185.697 +TCONS_00003836 1317 1317 246.048 190.701 +TCONS_00003837 1316 1316 15.2072 11.7757 +TCONS_00003838 1704 1704 1.87158 1.96262 +TCONS_00003839 496 496 0 0 +TCONS_00003840 436 436 0 0 +TCONS_00003841 4282 4282 105.901 304.054 +TCONS_00003842 2799 2799 550.099 1002.68 +TCONS_00003843 2814 2814 982.856 1801.91 +TCONS_00003844 896 896 104.896 50.0811 +TCONS_00003845 1214 1214 22.3583 15.701 +TCONS_00003846 3040 3040 0 0 +TCONS_00003847 962 962 29.2849 15.3481 +TCONS_00003848 1040 1040 22.0683 12.7828 +TCONS_00003849 1870 1870 0.00182192 0.00212435 +TCONS_00003850 1750 1750 12.3034 13.302 +TCONS_00003851 1741 1741 16.4742 17.7065 +TCONS_00003852 2741 2741 15.865 28.2671 +TCONS_00003853 1979 1979 74.1911 92.2232 +TCONS_00003854 2373 2373 3.58549 5.45561 +TCONS_00003855 2276 2276 20.5432 29.8495 +TCONS_00003856 2704 2704 7.99481 14.0355 +TCONS_00003857 2104 2104 0 0 +TCONS_00003858 3532 3532 6.70718 15.701 +TCONS_00003859 1062 1062 18.2746 10.8696 +TCONS_00003860 1178 1178 0 0 +TCONS_00003861 1199 1199 19.2818 13.3361 +TCONS_00003862 988 988 0 0 +TCONS_00003863 1067 1067 0.479707 0.361843 +TCONS_00003864 1700 1700 1.53065 1.60078 +TCONS_00003865 3539 3539 112.027 262.799 +TCONS_00003866 2021 2021 1473.11 1874.88 +TCONS_00003867 2137 2137 0.487274 0.660132 +TCONS_00003869 2153 2153 12.7037 17.3539 +TCONS_00003870 771 771 194.828 75.8022 +TCONS_00003871 1036 1036 55.6135 32.0561 +TCONS_00003872 2262 2262 20.1196 29.0348 +TCONS_00003873 2379 2379 26.1638 39.9213 +TCONS_00003874 2306 2306 0 0 +TCONS_00003875 2258 2258 535.89 771.833 +TCONS_00003876 2387 2387 44.4477 68.0707 +TCONS_00003877 2127 2127 24.4679 32.9748 +TCONS_00003878 2380 2380 17.717 27.0455 +TCONS_00003879 3517 3517 40.1455 93.5516 +TCONS_00003880 3211 3211 120.547 254.836 +TCONS_00003881 5325 5325 109.448 394.936 +TCONS_00003882 3759 3759 212.301 531.047 +TCONS_00003883 1946 1946 111.941 136.537 +TCONS_00003884 2880 2880 106.105 199.477 +TCONS_00003885 2135 2135 1657.64 2243.34 +TCONS_00003886 2608 2608 39.2981 66.3239 +TCONS_00003887 2510 2510 40.4206 65.4179 +TCONS_00003888 1832 1832 31.5997 35.9961 +TCONS_00003891 1918 1918 117.977 141.564 +TCONS_00003892 2069 2069 4.65004 6.07608 +TCONS_00003893 2242 2242 27.6623 39.5286 +TCONS_00003894 1570 1570 42.1227 40.1813 +TCONS_00003895 1104 1104 509.791 318.354 +TCONS_00003896 2483 2483 131.539 210.376 +TCONS_00003897 2182 2182 224.94 311.892 +TCONS_00003898 2193 2193 37.7982 52.7032 +TCONS_00003899 2923 2923 719.299 1374.15 +TCONS_00003900 4402 4402 207.349 612.914 +TCONS_00003901 2005 2005 17.9114 22.5939 +TCONS_00003902 1987 1987 0 0 +TCONS_00003903 1996 1996 73.5322 92.2878 +TCONS_00003904 2299 2299 61.4087 90.2258 +TCONS_00003905 2728 2728 15.6781 27.7901 +TCONS_00003906 781 781 2439.94 966.561 +TCONS_00003907 813 813 167.295 70.0569 +TCONS_00003908 909 909 633.943 308.495 +TCONS_00003909 990 990 849.081 461.807 +TCONS_00003910 2914 2914 15.9958 30.4565 +TCONS_00003911 4362 4362 109.519 320.636 +TCONS_00003912 2868 2868 80.2757 150.237 +TCONS_00003913 5269 5269 362.136 1292.41 +TCONS_00003914 3115 3115 437.221 894.609 +TCONS_00003915 3129 3129 96.3126 198.021 +TCONS_00003916 3839 3839 95.1355 243.352 +TCONS_00003917 732 732 4281.29 1547.69 +TCONS_00003918 1148 1148 99.3025 65.1013 +TCONS_00003919 1456 1456 20.6767 18.0574 +TCONS_00003920 1475 1475 40.0393 35.505 +TCONS_00003921 2016 2016 7.79672 9.89563 +TCONS_00003922 1116 1116 110.591 70.0001 +TCONS_00003923 1302 1302 3234.08 2472.3 +TCONS_00003924 1497 1497 8.35143 7.53555 +TCONS_00003925 2970 2970 225.649 438.577 +TCONS_00003926 1629 1629 157.392 156.703 +TCONS_00003927 2053 2053 246.904 319.829 +TCONS_00003928 1877 1877 129.096 151.164 +TCONS_00003929 2452 2452 0 0 +TCONS_00003932 2431 2431 37.8509 59.1452 +TCONS_00003934 2499 2499 111.311 179.284 +TCONS_00003935 262 262 1431.38 42.1718 +TCONS_00003936 335 335 344.309 27.8583 +TCONS_00003937 2236 2236 18.6817 26.6164 +TCONS_00003938 5141 5141 174.59 607.288 +TCONS_00003939 6420 6420 66.8855 293.129 +TCONS_00003940 6002 6002 71.9901 294.227 +TCONS_00003941 5915 5915 232.039 934.085 +TCONS_00003942 1231 1231 109.97 78.5474 +TCONS_00003943 2279 2279 34.2839 49.8875 +TCONS_00003944 1777 1777 129.781 142.791 +TCONS_00003945 1557 1557 167.546 158.284 +TCONS_00003946 1504 1504 116.315 105.527 +TCONS_00003947 2595 2595 97.6427 163.895 +TCONS_00003948 2625 2625 618.991 1052.12 +TCONS_00003949 1966 1966 200.704 247.641 +TCONS_00003950 1920 1920 0 0 +TCONS_00003951 1277 1277 45.4453 33.9377 +TCONS_00003952 1108 1108 12.3494 7.74689 +TCONS_00003953 1120 1120 0.164544 0.104615 +TCONS_00003954 1150 1150 28.8815 18.9751 +TCONS_00003955 887 887 15.7973 7.44172 +TCONS_00003956 704 704 0 0 +TCONS_00003957 734 734 14.6913 5.33168 +TCONS_00003958 657 657 0 0 +TCONS_00003959 2149 2149 125.536 171.134 +TCONS_00003961 3841 3841 318.913 816.213 +TCONS_00003962 1430 1430 263.228 225.044 +TCONS_00003963 3021 3021 3.93678 7.79354 +TCONS_00003964 3127 3127 0.0385476 0.0792002 +TCONS_00003965 3228 3228 436.598 928.211 +TCONS_00003966 3152 3152 352.783 731.067 +TCONS_00003967 3646 3646 89.762 217.359 +TCONS_00003968 1431 1431 220.5 188.67 +TCONS_00003969 3127 3127 5090.99 10460 +TCONS_00003970 2981 2981 6.09647 11.8966 +TCONS_00003971 1118 1118 216.855 137.568 +TCONS_00003972 958 958 98.7936 51.4979 +TCONS_00003973 2097 2097 1.51781 2.01332 +TCONS_00003974 2755 2755 1.43229 2.56612 +TCONS_00003975 4710 4710 0.824479 2.61664 +TCONS_00003976 2572 2572 1.13807e-4 1.89177e-4 +TCONS_00003977 2145 2145 0 0 +TCONS_00003978 1954 1954 9.07601 11.1215 +TCONS_00003979 1253 1253 47.7902 34.8779 +TCONS_00003980 2347 2347 74.7542 112.371 +TCONS_00003981 2216 2216 0 0 +TCONS_00003982 2266 2266 30.2139 43.6874 +TCONS_00003983 728 728 1989 713.4 +TCONS_00003984 1641 1641 93.4345 93.818 +TCONS_00003985 1826 1826 3.79054 4.30184 +TCONS_00003986 2248 2248 996.455 1428.13 +TCONS_00003987 1345 1345 20.1245 15.996 +TCONS_00003988 1530 1530 8.52786 7.89369 +TCONS_00003989 2072 2072 9.02304 11.8093 +TCONS_00003990 2012 2012 440.65 558.029 +TCONS_00003991 2642 2642 379.511 649.627 +TCONS_00003993 1305 1305 2.56025 1.96262 +TCONS_00003995 2209 2209 0 0 +TCONS_00003996 2303 2303 0 0 +TCONS_00003997 3322 3322 1.23759 2.90641 +TCONS_00003998 2754 2754 0 0 +TCONS_00003999 2902 2902 14.4761 27.4402 +TCONS_00004000 2222 2222 0 0 +TCONS_00004001 620 620 0 0 +TCONS_00004002 6472 6472 44.5614 196.93 +TCONS_00004003 7432 7432 186.841 952.511 +TCONS_00004004 1698 1698 284.324 296.948 +TCONS_00004005 2041 2041 199.312 256.49 +TCONS_00004006 5724 5724 78.0288 303.572 +TCONS_00004007 3322 3322 10.1236 22.1957 +TCONS_00004008 6356 6356 413.292 1792.57 +TCONS_00004009 2648 2648 1312.24 2251.78 +TCONS_00004010 6458 6458 39.6621 174.886 +TCONS_00004011 5892 5892 87.5201 350.893 +TCONS_00004012 2208 2208 42.2856 59.4086 +TCONS_00004013 1660 1660 566.111 576.038 +TCONS_00004014 2505 2505 10.7297 17.3273 +TCONS_00004015 847 847 1.09258 0.654207 +TCONS_00004016 5002 5002 135.586 458.297 +TCONS_00004017 4370 4370 32.6044 95.6394 +TCONS_00004018 3630 3630 6.85921 16.532 +TCONS_00004020 2773 2773 0 0 +TCONS_00004021 1349 1349 0 0 +TCONS_00004022 6343 6343 3.78105 16.3648 +TCONS_00004023 7735 7735 1.4441 7.67132 +TCONS_00004024 9646 9646 16.5366 110.185 +TCONS_00004025 3491 3491 6.67497 15.4321 +TCONS_00004026 2198 2198 1.05043 1.46836 +TCONS_00004027 2084 2084 4103.51 5405.46 +TCONS_00004028 2067 2067 174.613 227.915 +TCONS_00004029 4813 4813 1165.92 3785.17 +TCONS_00004030 4920 4920 114.235 379.505 +TCONS_00004031 2710 2710 198.38 349.112 +TCONS_00004032 2632 2632 106.826 182.104 +TCONS_00004033 1413 1413 752.081 633.946 +TCONS_00004034 1429 1429 0 0 +TCONS_00004035 1624 1624 72.9778 72.4003 +TCONS_00004036 1294 1294 1644.11 1247.55 +TCONS_00004037 1804 1804 410.309 459.273 +TCONS_00004038 1877 1877 0 0 +TCONS_00004039 1802 1802 606.444 677.956 +TCONS_00004040 1200 1200 3.85589 3.27103 +TCONS_00004041 4259 4259 5.72889 16.3552 +TCONS_00004042 1066 1066 60.4348 36.1169 +TCONS_00004043 1559 1559 0 0 +TCONS_00004044 1448 1448 30.3036 26.2934 +TCONS_00004046 1615 1615 148.726 146.603 +TCONS_00004048 1480 1480 0 0 +TCONS_00004049 1642 1642 9.20069 9.24496 +TCONS_00004051 894 894 160.147 76.2337 +TCONS_00004052 3694 3694 34.6685 85.1264 +TCONS_00004053 5038 5038 50.8563 173.194 +TCONS_00004054 4725 4725 76.4587 243.467 +TCONS_00004055 4698 4698 86.9026 275.064 +TCONS_00004056 4715 4715 52.5516 166.968 +TCONS_00004058 4643 4643 14.7766 46.1964 +TCONS_00004059 4783 4783 0.00896501 0.0289148 +TCONS_00004060 4761 4761 46.9017 150.542 +TCONS_00004061 5221 5221 0 0 +TCONS_00004062 4528 4528 7.95641 24.2275 +TCONS_00004063 1548 1548 93.6659 87.8923 +TCONS_00004064 2832 2832 167.976 310.094 +TCONS_00004065 2864 2864 0 0 +TCONS_00004066 6318 6318 47.7127 205.663 +TCONS_00004067 3475 3475 145.447 334.618 +TCONS_00004068 4486 4486 164.053 494.674 +TCONS_00004069 1357 1357 0 0 +TCONS_00004070 3293 3293 1318.04 2862.74 +TCONS_00004071 3137 3137 18.7376 38.6309 +TCONS_00004072 3219 3219 0 0 +TCONS_00004074 643 643 1.43944 0.65431 +TCONS_00004075 647 647 0 0 +TCONS_00004076 1883 1883 0.491457 0.654207 +TCONS_00004077 3128 3128 395.628 813.142 +TCONS_00004078 2156 2156 20.11 27.514 +TCONS_00004079 6306 6306 263.745 1134.62 +TCONS_00004080 8192 8192 21.8087 122.897 +TCONS_00004081 8007 8007 647.051 3561.66 +TCONS_00004082 2592 2592 3.11034 5.21418 +TCONS_00004083 584 584 0 0 +TCONS_00004084 2710 2710 1.70709 3.00417 +TCONS_00004085 2267 2267 215.718 312.068 +TCONS_00004086 1812 1812 30213.9 33990.4 +TCONS_00004087 1801 1801 7283.83 8137.6 +TCONS_00004088 1753 1753 33.4967 36.2863 +TCONS_00004089 1683 1683 0 0 +TCONS_00004090 1644 1644 0 0 +TCONS_00004091 1453 1453 14285.9 12445.9 +TCONS_00004092 1448 1448 15.2791 13.2572 +TCONS_00004093 1276 1276 216.085 161.215 +TCONS_00004094 1539 1539 0 0 +TCONS_00004095 2012 2012 3.42616e-4 4.33881e-4 +TCONS_00004096 1942 1942 3.76288 4.57901 +TCONS_00004097 2436 2436 0 0 +TCONS_00004098 2398 2398 0 0 +TCONS_00004099 2411 2411 0 0 +TCONS_00004100 920 920 0 0 +TCONS_00004101 1279 1279 0 0 +TCONS_00004102 1153 1153 7.89077 5.20097 +TCONS_00004103 958 958 62.4378 32.5468 +TCONS_00004104 2913 2913 1.6646 3.16827 +TCONS_00004105 2396 2396 1.89602 2.91578 +TCONS_00004106 3934 3934 183.171 480.842 +TCONS_00004107 1822 1822 0 0 +TCONS_00004108 951 951 257.213 132.804 +TCONS_00004109 2235 2235 174.265 248.157 +TCONS_00004110 5191 5191 0 0 +TCONS_00004111 5161 5161 1075.48 3756.14 +TCONS_00004112 5134 5134 531.162 1844.95 +TCONS_00004113 2995 2995 58.304 114.351 +TCONS_00004114 2961 2961 616.029 1193.41 +TCONS_00004115 1345 1345 7.13768 5.67339 +TCONS_00004116 1500 1500 140.032 126.649 +TCONS_00004117 1440 1440 50.6484 43.6594 +TCONS_00004118 1383 1383 0 0 +TCONS_00004119 2036 2036 920.003 1180.68 +TCONS_00004120 3391 3391 275.914 618.389 +TCONS_00004121 7931 7931 13.2639 72.2976 +TCONS_00004122 4405 4405 39.02 115.424 +TCONS_00004123 3250 3250 51.8319 111.001 +TCONS_00004124 2267 2267 1.98163 2.86672 +TCONS_00004125 2262 2262 0 0 +TCONS_00004126 2238 2238 7.33925 10.4668 +TCONS_00004127 2316 2316 3.2336e-4 4.78989e-4 +TCONS_00004128 2443 2443 50.0899 78.6945 +TCONS_00004129 720 720 0 0 +TCONS_00004130 2190 2190 8.32204 11.586 +TCONS_00004132 828 828 757.606 325.291 +TCONS_00004133 1273 1273 4052.8 3015.09 +TCONS_00004134 2805 2805 1204.72 2201 +TCONS_00004135 2730 2730 0 0 +TCONS_00004136 2689 2689 63.5949 110.971 +TCONS_00004137 4020 4020 156.599 420.61 +TCONS_00004138 8724 8724 856.275 5147.34 +TCONS_00004139 1534 1534 1770.86 1644.18 +TCONS_00004140 1543 1543 8.32384 7.78133 +TCONS_00004141 1183 1183 6.52912 4.44195 +TCONS_00004142 1830 1830 312.32 355.332 +TCONS_00004143 1151 1151 6961.28 4578.48 +TCONS_00004144 7188 7188 43.5322 214.416 +TCONS_00004145 7105 7105 96.7082 470.659 +TCONS_00004146 1411 1411 26.7451 22.5063 +TCONS_00004148 852 852 16.125 7.19712 +TCONS_00004149 697 697 9.7133 3.27103 +TCONS_00004150 2339 2339 713.507 1068.51 +TCONS_00004151 2534 2534 80.6904 131.961 +TCONS_00004152 1368 1368 316.218 256.488 +TCONS_00004153 1805 1805 298.542 334.38 +TCONS_00004154 1262 1262 6.29114 4.63139 +TCONS_00004155 1222 1222 29.332 20.7641 +TCONS_00004156 252 252 0 0 +TCONS_00004158 1002 1002 1962.48 1084.02 +TCONS_00004160 1840 1840 0 0 +TCONS_00004162 1720 1720 0 0 +TCONS_00004163 1734 1734 0 0 +TCONS_00004164 1855 1855 0 0 +TCONS_00004165 1007 1007 248.31 138.038 +TCONS_00004169 2100 2100 0 0 +TCONS_00004170 2164 2164 0 0 +TCONS_00004172 1844 1844 0 0 +TCONS_00004173 2100 2100 0 0 +TCONS_00004175 1906 1906 8.23632 9.8131 +TCONS_00004176 6978 6978 12.2197 58.3737 +TCONS_00004177 7099 7099 0 0 +TCONS_00004178 3105 3105 3.3111 6.75152 +TCONS_00004179 4316 4316 37.8519 109.587 +TCONS_00004180 1987 1987 246.673 308.021 +TCONS_00004181 1537 1537 127.436 118.59 +TCONS_00004182 2045 2045 16.7676 21.6253 +TCONS_00004184 1904 1904 0 0 +TCONS_00004185 1798 1798 18.9668 21.1498 +TCONS_00004186 2196 2196 115.938 161.901 +TCONS_00004187 538 538 21537.1 4831.97 +TCONS_00004188 2732 2732 57.116 101.402 +TCONS_00004189 2749 2749 258.788 462.555 +TCONS_00004190 2564 2564 12.8997 21.3697 +TCONS_00004191 2770 2770 37.5763 67.7213 +TCONS_00004192 2745 2745 0 0 +TCONS_00004193 1894 1894 0 0 +TCONS_00004194 1928 1928 8.85955 10.6934 +TCONS_00004196 1166 1166 7.80374 5.21532 +TCONS_00004197 905 905 24.2773 11.7454 +TCONS_00004199 2892 2892 4.51777 8.53172 +TCONS_00004200 2877 2877 0 0 +TCONS_00004201 2904 2904 0 0 +TCONS_00004202 2907 2907 0 0 +TCONS_00004203 2415 2415 6.73019 10.4404 +TCONS_00004204 892 892 7.35763 3.49201 +TCONS_00004205 1700 1700 27.6258 28.8915 +TCONS_00004206 3946 3946 508.99 1340.47 +TCONS_00004207 1631 1631 0 0 +TCONS_00004208 2008 2008 364.361 460.389 +TCONS_00004209 1984 1984 0 0 +TCONS_00004210 3029 3029 693.892 1377.6 +TCONS_00004211 1559 1559 67.0708 63.458 +TCONS_00004212 2474 2474 2.07191 3.30052 +TCONS_00004213 3055 3055 5.14538 10.3098 +TCONS_00004214 2975 2975 260.3 506.845 +TCONS_00004215 2963 2963 0.826367 1.60205 +TCONS_00004216 3650 3650 0 0 +TCONS_00004217 2014 2014 0 0 +TCONS_00004219 5368 5368 47.9146 174.354 +TCONS_00004220 574 574 52.1823 13.0354 +TCONS_00004221 1122 1122 63.034 40.1656 +TCONS_00004222 2482 2482 11.928 19.0685 +TCONS_00004223 1160 1160 185.701 123.318 +TCONS_00004224 4268 4268 113.641 325.151 +TCONS_00004225 1512 1512 79.3946 72.4801 +TCONS_00004226 1512 1512 25.7054 23.4667 +TCONS_00004227 2216 2216 1.05972 1.49483 +TCONS_00004228 2663 2663 57.9475 100.052 +TCONS_00004229 3026 3026 1.72116 3.41342 +TCONS_00004230 2696 2696 47.0618 82.3545 +TCONS_00004231 1404 1404 47.1204 39.4191 +TCONS_00004232 2173 2173 105.678 145.855 +TCONS_00004233 1966 1966 51.1875 63.1581 +TCONS_00004234 2746 2746 158.368 282.729 +TCONS_00004235 1912 1912 165.726 198.156 +TCONS_00004236 2029 2029 27.6136 35.3011 +TCONS_00004237 596 596 276.275 73.3117 +TCONS_00004238 2015 2015 12.2077 15.4855 +TCONS_00004239 1171 1171 6.16319 4.14071 +TCONS_00004240 4170 4170 38.2544 106.804 +TCONS_00004241 4395 4395 4.15502 12.2615 +TCONS_00004242 359 359 641.809 62.8038 +TCONS_00004243 1100 1100 4426.87 2751.98 +TCONS_00004244 1097 1097 874.78 541.954 +TCONS_00004245 1081 1081 0 0 +TCONS_00004246 1078 1078 0 0 +TCONS_00004247 1224 1224 389.272 276.116 +TCONS_00004248 3996 3996 517.118 1380.16 +TCONS_00004249 3981 3981 495.76 1317.89 +TCONS_00004250 3694 3694 3.72519 9.14698 +TCONS_00004251 1080 1080 25.292 15.3653 +TCONS_00004252 1639 1639 16.5167 16.5612 +TCONS_00004253 1143 1143 1533.05 999.628 +TCONS_00004254 4362 4362 64.2642 188.144 +TCONS_00004255 4014 4014 0 0 +TCONS_00004256 1625 1625 4.22272 4.19229 +TCONS_00004258 3950 3950 4827.01 12726 +TCONS_00004259 4091 4091 1053.7 2883.03 +TCONS_00004260 2521 2521 0 0 +TCONS_00004261 3241 3241 280.398 598.706 +TCONS_00004262 2368 2368 21.4795 32.6069 +TCONS_00004263 3381 3381 342.304 764.765 +TCONS_00004264 5835 5835 86.3707 342.804 +TCONS_00004265 3402 3402 10.1524 22.8329 +TCONS_00004266 941 941 32.0592 16.3262 +TCONS_00004267 2535 2535 128.294 209.903 +TCONS_00004268 2916 2916 11.0166 20.9915 +TCONS_00004269 2888 2888 137.04 258.41 +TCONS_00004270 3481 3481 429.082 988.977 +TCONS_00004271 3477 3477 482.791 1111.4 +TCONS_00004272 15880 15880 672.049 7439.68 +TCONS_00004273 3162 3162 3.49693 7.27135 +TCONS_00004274 3124 3124 189.305 388.547 +TCONS_00004275 2172 2172 0 0 +TCONS_00004276 5751 5751 4.9425 19.3232 +TCONS_00004277 2675 2675 11.9631 20.7568 +TCONS_00004278 4237 4237 464.011 1317.47 +TCONS_00004279 4234 4234 32.6797 92.7184 +TCONS_00004280 4234 4234 81.0293 229.895 +TCONS_00004281 4171 4171 6.39335 17.8544 +TCONS_00004282 2314 2314 9.94638 14.7194 +TCONS_00004283 2117 2117 2.12333e-4 2.84655e-4 +TCONS_00004284 1241 1241 19.9528 14.3925 +TCONS_00004285 1362 1362 723.574 583.83 +TCONS_00004286 1257 1257 0 0 +TCONS_00004287 1032 1032 2.36764 1.35804 +TCONS_00004288 1575 1575 0 0 +TCONS_00004289 2084 2084 63.9842 84.2849 +TCONS_00004290 1629 1629 5460.8 5436.89 +TCONS_00004291 2049 2049 0 0 +TCONS_00004292 2093 2093 15.816 20.9347 +TCONS_00004293 2232 2232 0 0 +TCONS_00004294 2973 2973 64.7807 126.047 +TCONS_00004295 2401 2401 0.0219259 0.033796 +TCONS_00004296 2281 2281 0 0 +TCONS_00004297 1715 1715 10.0802 10.6489 +TCONS_00004298 1045 1045 0 0 +TCONS_00004299 1249 1249 0.740923 0.654207 +TCONS_00004301 922 922 0 0 +TCONS_00004302 999 999 7.90747e-4 4.35111e-4 +TCONS_00004303 968 968 25.06 13.2402 +TCONS_00004304 888 888 19.0817 9.00243 +TCONS_00004308 1452 1452 0.751535 0.654207 +TCONS_00004309 2467 2467 0 0 +TCONS_00004310 1607 1607 6.26433 6.13947 +TCONS_00004311 2350 2350 139.338 209.749 +TCONS_00004312 2456 2456 348.578 550.842 +TCONS_00004313 2126 2126 5031.68 6777.52 +TCONS_00004314 2135 2135 0 0 +TCONS_00004315 2073 2073 0 0 +TCONS_00004316 2015 2015 27.3855 34.7384 +TCONS_00004317 1812 1812 0 0 +TCONS_00004318 1671 1671 26.3366 27.0033 +TCONS_00004319 1978 1978 16.5636 20.5776 +TCONS_00004320 3776 3776 18.8735 47.4368 +TCONS_00004321 3773 3773 161.712 406.105 +TCONS_00004322 3705 3705 0.00992042 0.0244362 +TCONS_00004323 3834 3834 166.051 424.162 +TCONS_00004324 3063 3063 176.334 354.32 +TCONS_00004325 3139 3139 64.0226 132.085 +TCONS_00004326 4775 4775 102.861 331.174 +TCONS_00004327 4317 4317 154.917 448.617 +TCONS_00004328 3921 3921 7.62166 19.9376 +TCONS_00004329 3797 3797 60.5164 153.001 +TCONS_00004330 1860 1860 489.726 567.555 +TCONS_00004331 2544 2544 6.32839 10.3942 +TCONS_00004332 2537 2537 23.7927 38.961 +TCONS_00004333 927 927 80.959 40.4272 +TCONS_00004334 5160 5160 0 0 +TCONS_00004335 4949 4949 0 0 +TCONS_00004336 5786 5786 242.063 952.36 +TCONS_00004337 5850 5850 0 0 +TCONS_00004338 6175 6175 229.585 966.402 +TCONS_00004340 6283 6283 166.823 714.951 +TCONS_00004342 1915 1915 27.176 32.5516 +TCONS_00004343 2088 2088 28.4611 37.5716 +TCONS_00004344 5241 5241 4.2945 15.2415 +TCONS_00004345 5087 5087 40.8351 140.481 +TCONS_00004346 5096 5096 103.166 355.568 +TCONS_00004347 5000 5000 5.52684 18.6735 +TCONS_00004348 5136 5136 426.931 1483.52 +TCONS_00004349 2198 2198 3.16078 4.41835 +TCONS_00004350 2326 2326 1.31865 1.96262 +TCONS_00004351 2057 2057 64.756 84.0656 +TCONS_00004352 3348 3348 31.623 69.9135 +TCONS_00004353 3300 3300 136.687 297.555 +TCONS_00004354 3333 3333 0.00274081 0.00603043 +TCONS_00004355 3494 3494 22.4161 51.872 +TCONS_00004356 3639 3639 45.8456 110.789 +TCONS_00004357 4462 4462 518.87 1555.76 +TCONS_00004359 4264 4264 6.11996 17.4933 +TCONS_00004360 4498 4498 0 0 +TCONS_00004361 2089 2089 4.52441 5.97589 +TCONS_00004362 2126 2126 169.394 228.168 +TCONS_00004363 2411 2411 32.92 50.9748 +TCONS_00004364 3586 3586 197.217 469.197 +TCONS_00004365 14287 14287 755.99 7517.56 +TCONS_00004366 14290 14290 131.468 1307.6 +TCONS_00004367 846 846 0 0 +TCONS_00004368 3903 3903 84.6913 220.468 +TCONS_00004369 3883 3883 0 0 +TCONS_00004370 510 510 1.81454 0.654207 +TCONS_00004371 8653 8653 185.251 1104.3 +TCONS_00004372 8587 8587 224.966 1330.55 +TCONS_00004373 3921 3921 5.29009 13.8384 +TCONS_00004374 2834 2834 164.66 304.206 +TCONS_00004375 1637 1637 0 0 +TCONS_00004376 2740 2740 177.331 315.831 +TCONS_00004377 2731 2731 1258.05 2232.61 +TCONS_00004378 2565 2565 1419.55 2352.63 +TCONS_00004379 2574 2574 174.874 290.933 +TCONS_00004380 2451 2451 0 0 +TCONS_00004381 2617 2617 0 0 +TCONS_00004382 2388 2388 76.283 116.88 +TCONS_00004383 4314 4314 21.2511 61.4952 +TCONS_00004384 4492 4492 0 0 +TCONS_00004385 1586 1586 0.92831 0.896026 +TCONS_00004386 540 540 10.5196 2.37501 +TCONS_00004387 738 738 0 0 +TCONS_00004388 646 646 0 0 +TCONS_00004389 2552 2552 10.2353 16.869 +TCONS_00004390 2791 2791 109.526 199.017 +TCONS_00004391 4088 4088 43.8011 119.751 +TCONS_00004392 4129 4129 577.809 1596.46 +TCONS_00004394 1768 1768 61.9915 67.8115 +TCONS_00004395 697 697 0 0 +TCONS_00004396 2041 2041 1.5251 1.96262 +TCONS_00004397 5192 5192 104.243 366.356 +TCONS_00004398 1287 1287 2646.35 1994.95 +TCONS_00004399 1547 1547 94.5968 88.699 +TCONS_00004400 1074 1074 104.54 63.0659 +TCONS_00004401 1607 1607 50.0332 49.036 +TCONS_00004402 1631 1631 18.2766 18.2224 +TCONS_00004403 1553 1553 9.36654 8.82229 +TCONS_00004404 1566 1566 387.15 368.212 +TCONS_00004405 1676 1676 52.3524 53.8627 +TCONS_00004406 1824 1824 72.2985 81.9484 +TCONS_00004408 1244 1244 14.7138 10.6447 +TCONS_00004409 934 934 0 0 +TCONS_00004410 1607 1607 296.235 290.331 +TCONS_00004412 1394 1394 79.1313 65.6388 +TCONS_00004413 2160 2160 14.3916 19.7309 +TCONS_00004414 1411 1411 12.799 10.7705 +TCONS_00004415 2054 2054 6.18476 8.01588 +TCONS_00004416 2077 2077 118.072 154.949 +TCONS_00004418 953 953 7.77114 4.02338 +TCONS_00004419 1774 1774 0 0 +TCONS_00004420 2239 2239 199.968 285.325 +TCONS_00004421 1842 1842 600.875 688.722 +TCONS_00004422 2924 2924 683.304 1305.86 +TCONS_00004423 2686 2686 2.26253 3.94325 +TCONS_00004424 4859 4859 2.96008 9.70615 +TCONS_00004425 5799 5799 0 0 +TCONS_00004426 3940 3940 0 0 +TCONS_00004427 5094 5094 0.215708 0.743146 +TCONS_00004428 2703 2703 0 0 +TCONS_00004429 2798 2798 8.25825 15.0468 +TCONS_00004431 2725 2725 0 0 +TCONS_00004432 4461 4461 0 0 +TCONS_00004433 4548 4548 48.5196 148.429 +TCONS_00004434 4417 4417 20.4325 60.614 +TCONS_00004435 4424 4424 11.1145 33.0269 +TCONS_00004436 686 686 127.227 41.8554 +TCONS_00004439 2497 2497 7.99159 12.8604 +TCONS_00004440 2827 2827 14.0584 25.903 +TCONS_00004441 2683 2683 143.47 249.742 +TCONS_00004442 2803 2803 0 0 +TCONS_00004443 1653 1653 0 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/signalP_results.txt Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,3905 @@ +# SignalP-4.1 euk predictions +>TCONS_00000007 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.130 + max. Y 39 0.122 + max. S 38 0.314 + mean S 1-38 0.114 + D 1-38 0.118 0.450 NO +Name=TCONS_00000007 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000008 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.130 + max. Y 39 0.122 + max. S 38 0.314 + mean S 1-38 0.114 + D 1-38 0.118 0.450 NO +Name=TCONS_00000008 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000009 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.130 + max. Y 39 0.122 + max. S 38 0.314 + mean S 1-38 0.114 + D 1-38 0.118 0.450 NO +Name=TCONS_00000009 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000020 +# Measure Position Value Cutoff signal peptide? + max. C 27 0.186 + max. Y 27 0.254 + max. S 18 0.608 + mean S 1-26 0.355 + D 1-26 0.308 0.450 NO +Name=TCONS_00000020 SP='NO' D=0.308 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000023 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.110 + max. Y 12 0.110 + max. S 11 0.122 + mean S 1-11 0.112 + D 1-11 0.111 0.450 NO +Name=TCONS_00000023 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000024 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.110 + max. Y 12 0.110 + max. S 11 0.122 + mean S 1-11 0.112 + D 1-11 0.111 0.450 NO +Name=TCONS_00000024 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000025 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.110 + max. Y 13 0.117 + max. S 2 0.175 + mean S 1-12 0.125 + D 1-12 0.122 0.450 NO +Name=TCONS_00000025 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000026 +# Measure Position Value Cutoff signal peptide? + max. C 49 0.112 + max. Y 46 0.112 + max. S 37 0.123 + mean S 1-45 0.105 + D 1-45 0.108 0.450 NO +Name=TCONS_00000026 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000027 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.154 + max. Y 35 0.119 + max. S 54 0.119 + mean S 1-34 0.095 + D 1-34 0.106 0.450 NO +Name=TCONS_00000027 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000028 +# Measure Position Value Cutoff signal peptide? + max. C 21 0.345 + max. Y 21 0.301 + max. S 1 0.362 + mean S 1-20 0.252 + D 1-20 0.274 0.450 NO +Name=TCONS_00000028 SP='NO' D=0.274 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000029 +# Measure Position Value Cutoff signal peptide? + max. C 21 0.345 + max. Y 21 0.301 + max. S 1 0.362 + mean S 1-20 0.252 + D 1-20 0.274 0.450 NO +Name=TCONS_00000029 SP='NO' D=0.274 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000030 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.111 + max. Y 15 0.115 + max. S 4 0.155 + mean S 1-14 0.118 + D 1-14 0.116 0.450 NO +Name=TCONS_00000030 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000031 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.111 + max. Y 15 0.115 + max. S 4 0.155 + mean S 1-14 0.118 + D 1-14 0.116 0.450 NO +Name=TCONS_00000031 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000032 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.111 + max. Y 15 0.115 + max. S 4 0.155 + mean S 1-14 0.118 + D 1-14 0.116 0.450 NO +Name=TCONS_00000032 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000045 +# Measure Position Value Cutoff signal peptide? + max. C 61 0.110 + max. Y 11 0.125 + max. S 3 0.182 + mean S 1-10 0.129 + D 1-10 0.127 0.450 NO +Name=TCONS_00000045 SP='NO' D=0.127 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000046 +# Measure Position Value Cutoff signal peptide? + max. C 40 0.112 + max. Y 11 0.117 + max. S 4 0.136 + mean S 1-10 0.122 + D 1-10 0.120 0.450 NO +Name=TCONS_00000046 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000047 +# Measure Position Value Cutoff signal peptide? + max. C 40 0.112 + max. Y 11 0.117 + max. S 4 0.136 + mean S 1-10 0.122 + D 1-10 0.120 0.450 NO +Name=TCONS_00000047 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000048 +# Measure Position Value Cutoff signal peptide? + max. C 13 0.160 + max. Y 13 0.168 + max. S 12 0.336 + mean S 1-12 0.176 + D 1-12 0.172 0.450 NO +Name=TCONS_00000048 SP='NO' D=0.172 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000049 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.114 + max. Y 18 0.175 + max. S 14 0.440 + mean S 1-17 0.264 + D 1-17 0.223 0.450 NO +Name=TCONS_00000049 SP='NO' D=0.223 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000055 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.121 + max. Y 12 0.141 + max. S 6 0.261 + mean S 1-11 0.198 + D 1-11 0.172 0.450 NO +Name=TCONS_00000055 SP='NO' D=0.172 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000056 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.121 + max. Y 12 0.141 + max. S 6 0.261 + mean S 1-11 0.198 + D 1-11 0.172 0.450 NO +Name=TCONS_00000056 SP='NO' D=0.172 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000057 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.121 + max. Y 12 0.144 + max. S 6 0.271 + mean S 1-11 0.205 + D 1-11 0.177 0.450 NO +Name=TCONS_00000057 SP='NO' D=0.177 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000062 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.130 + max. Y 16 0.121 + max. S 9 0.146 + mean S 1-15 0.117 + D 1-15 0.119 0.450 NO +Name=TCONS_00000062 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000063 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.399 + max. Y 16 0.492 + max. S 7 0.746 + mean S 1-15 0.639 + D 1-15 0.571 0.450 YES +Name=TCONS_00000063 SP='YES' Cleavage site between pos. 15 and 16: VWA-RS D=0.571 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000064 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.399 + max. Y 16 0.492 + max. S 7 0.746 + mean S 1-15 0.639 + D 1-15 0.571 0.450 YES +Name=TCONS_00000064 SP='YES' Cleavage site between pos. 15 and 16: VWA-RS D=0.571 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000065 +# Measure Position Value Cutoff signal peptide? + max. C 40 0.112 + max. Y 11 0.114 + max. S 8 0.152 + mean S 1-10 0.126 + D 1-10 0.120 0.450 NO +Name=TCONS_00000065 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000066 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.132 + max. Y 16 0.124 + max. S 13 0.151 + mean S 1-15 0.123 + D 1-15 0.124 0.450 NO +Name=TCONS_00000066 SP='NO' D=0.124 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000067 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.132 + max. Y 16 0.124 + max. S 13 0.151 + mean S 1-15 0.123 + D 1-15 0.124 0.450 NO +Name=TCONS_00000067 SP='NO' D=0.124 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000068 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.110 + max. Y 51 0.111 + max. S 34 0.129 + mean S 1-50 0.101 + D 1-50 0.106 0.450 NO +Name=TCONS_00000068 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000071 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.111 + max. Y 12 0.120 + max. S 1 0.144 + mean S 1-11 0.120 + D 1-11 0.120 0.450 NO +Name=TCONS_00000071 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000072 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.114 + max. Y 12 0.121 + max. S 1 0.149 + mean S 1-11 0.123 + D 1-11 0.122 0.450 NO +Name=TCONS_00000072 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000073 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.111 + max. Y 12 0.120 + max. S 1 0.144 + mean S 1-11 0.120 + D 1-11 0.120 0.450 NO +Name=TCONS_00000073 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000074 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.153 + max. Y 29 0.124 + max. S 1 0.165 + mean S 1-28 0.104 + D 1-28 0.114 0.450 NO +Name=TCONS_00000074 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000076 +# Measure Position Value Cutoff signal peptide? + max. C 56 0.111 + max. Y 15 0.115 + max. S 2 0.136 + mean S 1-14 0.121 + D 1-14 0.118 0.450 NO +Name=TCONS_00000076 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000077 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.119 + max. Y 11 0.123 + max. S 1 0.163 + mean S 1-10 0.120 + D 1-10 0.121 0.450 NO +Name=TCONS_00000077 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000078 +# Measure Position Value Cutoff signal peptide? + max. C 56 0.111 + max. Y 15 0.115 + max. S 2 0.136 + mean S 1-14 0.121 + D 1-14 0.118 0.450 NO +Name=TCONS_00000078 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000079 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.153 + max. Y 29 0.124 + max. S 1 0.165 + mean S 1-28 0.104 + D 1-28 0.114 0.450 NO +Name=TCONS_00000079 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000080 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.117 + max. Y 15 0.145 + max. S 13 0.290 + mean S 1-14 0.212 + D 1-14 0.181 0.450 NO +Name=TCONS_00000080 SP='NO' D=0.181 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000081 +# Measure Position Value Cutoff signal peptide? + max. C 70 0.111 + max. Y 40 0.110 + max. S 19 0.153 + mean S 1-39 0.105 + D 1-39 0.107 0.450 NO +Name=TCONS_00000081 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000092 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.169 + max. Y 34 0.139 + max. S 33 0.218 + mean S 1-33 0.115 + D 1-33 0.126 0.450 NO +Name=TCONS_00000092 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000093 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.108 + max. Y 50 0.106 + max. S 20 0.111 + mean S 1-49 0.101 + D 1-49 0.103 0.450 NO +Name=TCONS_00000093 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000095 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.108 + max. Y 50 0.106 + max. S 20 0.111 + mean S 1-49 0.101 + D 1-49 0.103 0.450 NO +Name=TCONS_00000095 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000096 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.109 + max. Y 41 0.107 + max. S 21 0.126 + mean S 1-40 0.101 + D 1-40 0.104 0.450 NO +Name=TCONS_00000096 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000097 +# Measure Position Value Cutoff signal peptide? + max. C 27 0.113 + max. Y 18 0.111 + max. S 31 0.125 + mean S 1-17 0.106 + D 1-17 0.108 0.450 NO +Name=TCONS_00000097 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000098 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.108 + max. Y 46 0.106 + max. S 45 0.110 + mean S 1-45 0.100 + D 1-45 0.103 0.450 NO +Name=TCONS_00000098 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000099 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.272 + max. Y 51 0.221 + max. S 47 0.289 + mean S 1-50 0.141 + D 1-50 0.178 0.450 NO +Name=TCONS_00000099 SP='NO' D=0.178 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000111 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.212 + max. Y 39 0.381 + max. S 30 0.866 + mean S 1-38 0.627 + D 1-38 0.514 0.450 YES +Name=TCONS_00000111 SP='YES' Cleavage site between pos. 38 and 39: APA-LP D=0.514 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000112 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.212 + max. Y 39 0.381 + max. S 30 0.866 + mean S 1-38 0.627 + D 1-38 0.514 0.450 YES +Name=TCONS_00000112 SP='YES' Cleavage site between pos. 38 and 39: APA-LP D=0.514 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000113 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.178 + max. Y 17 0.280 + max. S 21 0.588 + mean S 1-16 0.393 + D 1-16 0.341 0.450 NO +Name=TCONS_00000113 SP='NO' D=0.341 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000114 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.212 + max. Y 39 0.381 + max. S 30 0.866 + mean S 1-38 0.627 + D 1-38 0.514 0.450 YES +Name=TCONS_00000114 SP='YES' Cleavage site between pos. 38 and 39: APA-LP D=0.514 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000115 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.212 + max. Y 39 0.381 + max. S 30 0.866 + mean S 1-38 0.627 + D 1-38 0.514 0.450 YES +Name=TCONS_00000115 SP='YES' Cleavage site between pos. 38 and 39: APA-LP D=0.514 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000129 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.120 + max. Y 70 0.107 + max. S 5 0.121 + mean S 1-69 0.098 + D 1-69 0.102 0.450 NO +Name=TCONS_00000129 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000130 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.127 + max. Y 17 0.114 + max. S 49 0.191 + mean S 1-16 0.102 + D 1-16 0.108 0.450 NO +Name=TCONS_00000130 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000131 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.127 + max. Y 17 0.114 + max. S 49 0.191 + mean S 1-16 0.102 + D 1-16 0.108 0.450 NO +Name=TCONS_00000131 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000132 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.153 + max. Y 11 0.183 + max. S 42 0.387 + mean S 1-10 0.280 + D 1-10 0.235 0.450 NO +Name=TCONS_00000132 SP='NO' D=0.235 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000133 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.146 + max. Y 19 0.156 + max. S 15 0.240 + mean S 1-18 0.192 + D 1-18 0.176 0.450 NO +Name=TCONS_00000133 SP='NO' D=0.176 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000158 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.165 + max. Y 27 0.154 + max. S 40 0.403 + mean S 1-26 0.152 + D 1-26 0.153 0.450 NO +Name=TCONS_00000158 SP='NO' D=0.153 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000159 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.165 + max. Y 27 0.154 + max. S 40 0.403 + mean S 1-26 0.152 + D 1-26 0.153 0.450 NO +Name=TCONS_00000159 SP='NO' D=0.153 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000160 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.109 + max. Y 12 0.164 + max. S 1 0.291 + mean S 1-11 0.208 + D 1-11 0.188 0.450 NO +Name=TCONS_00000160 SP='NO' D=0.188 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000173 +# Measure Position Value Cutoff signal peptide? + max. C 9 0.109 + max. Y 19 0.112 + max. S 8 0.149 + mean S 1-18 0.120 + D 1-18 0.117 0.450 NO +Name=TCONS_00000173 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000174 +# Measure Position Value Cutoff signal peptide? + max. C 9 0.109 + max. Y 19 0.112 + max. S 8 0.149 + mean S 1-18 0.120 + D 1-18 0.117 0.450 NO +Name=TCONS_00000174 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000175 +# Measure Position Value Cutoff signal peptide? + max. C 54 0.118 + max. Y 13 0.111 + max. S 11 0.148 + mean S 1-12 0.119 + D 1-12 0.115 0.450 NO +Name=TCONS_00000175 SP='NO' D=0.115 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000176 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.111 + max. Y 54 0.108 + max. S 50 0.132 + mean S 1-53 0.104 + D 1-53 0.106 0.450 NO +Name=TCONS_00000176 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000179 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.224 + max. Y 38 0.158 + max. S 11 0.149 + mean S 1-37 0.116 + D 1-37 0.135 0.450 NO +Name=TCONS_00000179 SP='NO' D=0.135 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000180 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.171 + max. Y 22 0.131 + max. S 20 0.122 + mean S 1-21 0.100 + D 1-21 0.114 0.450 NO +Name=TCONS_00000180 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000185 +# Measure Position Value Cutoff signal peptide? + max. C 57 0.168 + max. Y 57 0.145 + max. S 42 0.155 + mean S 1-56 0.109 + D 1-56 0.125 0.450 NO +Name=TCONS_00000185 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000186 +# Measure Position Value Cutoff signal peptide? + max. C 57 0.168 + max. Y 57 0.145 + max. S 42 0.155 + mean S 1-56 0.109 + D 1-56 0.125 0.450 NO +Name=TCONS_00000186 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000187 +# Measure Position Value Cutoff signal peptide? + max. C 57 0.168 + max. Y 57 0.145 + max. S 42 0.155 + mean S 1-56 0.109 + D 1-56 0.125 0.450 NO +Name=TCONS_00000187 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000190 +# Measure Position Value Cutoff signal peptide? + max. C 8 0.108 + max. Y 11 0.113 + max. S 8 0.130 + mean S 1-10 0.118 + D 1-10 0.116 0.450 NO +Name=TCONS_00000190 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000191 +# Measure Position Value Cutoff signal peptide? + max. C 8 0.108 + max. Y 11 0.113 + max. S 8 0.130 + mean S 1-10 0.118 + D 1-10 0.116 0.450 NO +Name=TCONS_00000191 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000192 +# Measure Position Value Cutoff signal peptide? + max. C 8 0.108 + max. Y 11 0.113 + max. S 8 0.130 + mean S 1-10 0.118 + D 1-10 0.116 0.450 NO +Name=TCONS_00000192 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000199 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.110 + max. Y 12 0.116 + max. S 1 0.145 + mean S 1-11 0.105 + D 1-11 0.110 0.450 NO +Name=TCONS_00000199 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000200 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.110 + max. Y 12 0.116 + max. S 1 0.145 + mean S 1-11 0.105 + D 1-11 0.110 0.450 NO +Name=TCONS_00000200 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000201 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.110 + max. Y 12 0.116 + max. S 1 0.145 + mean S 1-11 0.105 + D 1-11 0.110 0.450 NO +Name=TCONS_00000201 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000202 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.110 + max. Y 12 0.116 + max. S 1 0.145 + mean S 1-11 0.105 + D 1-11 0.110 0.450 NO +Name=TCONS_00000202 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000203 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.110 + max. Y 12 0.116 + max. S 1 0.145 + mean S 1-11 0.105 + D 1-11 0.110 0.450 NO +Name=TCONS_00000203 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000204 +# Measure Position Value Cutoff signal peptide? + max. C 61 0.128 + max. Y 61 0.113 + max. S 13 0.118 + mean S 1-60 0.099 + D 1-60 0.105 0.450 NO +Name=TCONS_00000204 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000205 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.130 + max. Y 23 0.141 + max. S 7 0.192 + mean S 1-22 0.152 + D 1-22 0.147 0.450 NO +Name=TCONS_00000205 SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000206 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.130 + max. Y 23 0.141 + max. S 7 0.192 + mean S 1-22 0.152 + D 1-22 0.147 0.450 NO +Name=TCONS_00000206 SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000207 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.130 + max. Y 23 0.139 + max. S 7 0.187 + mean S 1-22 0.149 + D 1-22 0.145 0.450 NO +Name=TCONS_00000207 SP='NO' D=0.145 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000208 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.130 + max. Y 23 0.141 + max. S 7 0.192 + mean S 1-22 0.152 + D 1-22 0.147 0.450 NO +Name=TCONS_00000208 SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000210 +# Measure Position Value Cutoff signal peptide? + max. C 8 0.111 + max. Y 11 0.118 + max. S 1 0.149 + mean S 1-10 0.118 + D 1-10 0.118 0.450 NO +Name=TCONS_00000210 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000211 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.110 + max. Y 11 0.107 + max. S 1 0.115 + mean S 1-10 0.097 + D 1-10 0.101 0.450 NO +Name=TCONS_00000211 SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000215 +# Measure Position Value Cutoff signal peptide? + max. C 69 0.107 + max. Y 69 0.105 + max. S 48 0.120 + mean S 1-68 0.094 + D 1-68 0.099 0.450 NO +Name=TCONS_00000215 SP='NO' D=0.099 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000216 +# Measure Position Value Cutoff signal peptide? + max. C 69 0.107 + max. Y 69 0.105 + max. S 48 0.120 + mean S 1-68 0.094 + D 1-68 0.099 0.450 NO +Name=TCONS_00000216 SP='NO' D=0.099 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000219 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.164 + max. Y 18 0.231 + max. S 11 0.418 + mean S 1-17 0.320 + D 1-17 0.266 0.500 NO +Name=TCONS_00000219 SP='NO' D=0.266 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000220 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.164 + max. Y 18 0.231 + max. S 11 0.418 + mean S 1-17 0.320 + D 1-17 0.266 0.500 NO +Name=TCONS_00000220 SP='NO' D=0.266 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000221 +# Measure Position Value Cutoff signal peptide? + max. C 56 0.112 + max. Y 29 0.107 + max. S 37 0.135 + mean S 1-28 0.106 + D 1-28 0.106 0.450 NO +Name=TCONS_00000221 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000222 +# Measure Position Value Cutoff signal peptide? + max. C 56 0.112 + max. Y 29 0.107 + max. S 37 0.135 + mean S 1-28 0.106 + D 1-28 0.106 0.450 NO +Name=TCONS_00000222 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000223 +# Measure Position Value Cutoff signal peptide? + max. C 56 0.112 + max. Y 29 0.107 + max. S 37 0.135 + mean S 1-28 0.106 + D 1-28 0.106 0.450 NO +Name=TCONS_00000223 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000230 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.148 + max. Y 38 0.159 + max. S 31 0.278 + mean S 1-37 0.164 + D 1-37 0.162 0.450 NO +Name=TCONS_00000230 SP='NO' D=0.162 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000231 +# Measure Position Value Cutoff signal peptide? + max. C 40 0.121 + max. Y 40 0.142 + max. S 34 0.227 + mean S 1-39 0.145 + D 1-39 0.143 0.450 NO +Name=TCONS_00000231 SP='NO' D=0.143 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000232 +# Measure Position Value Cutoff signal peptide? + max. C 54 0.113 + max. Y 69 0.104 + max. S 59 0.113 + mean S 1-68 0.100 + D 1-68 0.102 0.450 NO +Name=TCONS_00000232 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000234 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.108 + max. Y 12 0.105 + max. S 17 0.112 + mean S 1-11 0.100 + D 1-11 0.102 0.450 NO +Name=TCONS_00000234 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000235 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.108 + max. Y 12 0.105 + max. S 17 0.112 + mean S 1-11 0.100 + D 1-11 0.102 0.450 NO +Name=TCONS_00000235 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000236 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.108 + max. Y 12 0.105 + max. S 17 0.112 + mean S 1-11 0.100 + D 1-11 0.102 0.450 NO +Name=TCONS_00000236 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000237 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.108 + max. Y 12 0.105 + max. S 17 0.112 + mean S 1-11 0.100 + D 1-11 0.102 0.450 NO +Name=TCONS_00000237 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000240 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.108 + max. Y 12 0.105 + max. S 17 0.112 + mean S 1-11 0.100 + D 1-11 0.102 0.450 NO +Name=TCONS_00000240 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000245 +# Measure Position Value Cutoff signal peptide? + max. C 32 0.118 + max. Y 32 0.110 + max. S 35 0.150 + mean S 1-31 0.104 + D 1-31 0.107 0.450 NO +Name=TCONS_00000245 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000246 +# Measure Position Value Cutoff signal peptide? + max. C 32 0.118 + max. Y 32 0.110 + max. S 35 0.150 + mean S 1-31 0.104 + D 1-31 0.107 0.450 NO +Name=TCONS_00000246 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000248 +# Measure Position Value Cutoff signal peptide? + max. C 55 0.275 + max. Y 55 0.200 + max. S 49 0.315 + mean S 1-54 0.127 + D 1-54 0.161 0.450 NO +Name=TCONS_00000248 SP='NO' D=0.161 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000250 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.118 + max. Y 24 0.116 + max. S 18 0.161 + mean S 1-23 0.118 + D 1-23 0.117 0.450 NO +Name=TCONS_00000250 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000251 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.132 + max. Y 38 0.120 + max. S 35 0.146 + mean S 1-37 0.112 + D 1-37 0.116 0.450 NO +Name=TCONS_00000251 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000252 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.112 + max. Y 24 0.110 + max. S 46 0.118 + mean S 1-23 0.107 + D 1-23 0.108 0.450 NO +Name=TCONS_00000252 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000265 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.182 + max. Y 24 0.152 + max. S 23 0.283 + mean S 1-23 0.129 + D 1-23 0.140 0.450 NO +Name=TCONS_00000265 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000266 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.182 + max. Y 24 0.152 + max. S 23 0.283 + mean S 1-23 0.129 + D 1-23 0.140 0.450 NO +Name=TCONS_00000266 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000267 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.182 + max. Y 24 0.152 + max. S 23 0.283 + mean S 1-23 0.129 + D 1-23 0.140 0.450 NO +Name=TCONS_00000267 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000268 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.182 + max. Y 24 0.152 + max. S 23 0.283 + mean S 1-23 0.129 + D 1-23 0.140 0.450 NO +Name=TCONS_00000268 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000269 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.182 + max. Y 24 0.152 + max. S 23 0.283 + mean S 1-23 0.129 + D 1-23 0.140 0.450 NO +Name=TCONS_00000269 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000270 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.182 + max. Y 24 0.152 + max. S 23 0.283 + mean S 1-23 0.129 + D 1-23 0.140 0.450 NO +Name=TCONS_00000270 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000271 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.152 + max. Y 41 0.221 + max. S 10 0.596 + mean S 1-40 0.331 + D 1-40 0.265 0.500 NO +Name=TCONS_00000271 SP='NO' D=0.265 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000283 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.146 + max. Y 11 0.205 + max. S 2 0.510 + mean S 1-10 0.390 + D 1-10 0.279 0.500 NO +Name=TCONS_00000283 SP='NO' D=0.279 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000284 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.227 + max. Y 20 0.273 + max. S 1 0.570 + mean S 1-19 0.289 + D 1-19 0.282 0.450 NO +Name=TCONS_00000284 SP='NO' D=0.282 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000285 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.227 + max. Y 20 0.273 + max. S 1 0.570 + mean S 1-19 0.289 + D 1-19 0.282 0.450 NO +Name=TCONS_00000285 SP='NO' D=0.282 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000286 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.227 + max. Y 20 0.273 + max. S 1 0.570 + mean S 1-19 0.289 + D 1-19 0.282 0.450 NO +Name=TCONS_00000286 SP='NO' D=0.282 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000287 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.227 + max. Y 20 0.273 + max. S 1 0.570 + mean S 1-19 0.289 + D 1-19 0.282 0.450 NO +Name=TCONS_00000287 SP='NO' D=0.282 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000288 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.140 + max. Y 20 0.184 + max. S 19 0.345 + mean S 1-19 0.291 + D 1-19 0.227 0.500 NO +Name=TCONS_00000288 SP='NO' D=0.227 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000298 +# Measure Position Value Cutoff signal peptide? + max. C 63 0.108 + max. Y 21 0.108 + max. S 3 0.129 + mean S 1-20 0.108 + D 1-20 0.108 0.450 NO +Name=TCONS_00000298 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000299 +# Measure Position Value Cutoff signal peptide? + max. C 63 0.108 + max. Y 21 0.108 + max. S 3 0.129 + mean S 1-20 0.108 + D 1-20 0.108 0.450 NO +Name=TCONS_00000299 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000301 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.632 + max. Y 19 0.770 + max. S 12 0.970 + mean S 1-18 0.934 + D 1-18 0.859 0.450 YES +Name=TCONS_00000301 SP='YES' Cleavage site between pos. 18 and 19: LRA-FP D=0.859 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000302 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.127 + max. Y 12 0.182 + max. S 1 0.348 + mean S 1-11 0.269 + D 1-11 0.229 0.450 NO +Name=TCONS_00000302 SP='NO' D=0.229 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000303 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.110 + max. Y 30 0.110 + max. S 13 0.134 + mean S 1-29 0.112 + D 1-29 0.111 0.450 NO +Name=TCONS_00000303 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000304 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.110 + max. Y 30 0.110 + max. S 13 0.134 + mean S 1-29 0.112 + D 1-29 0.111 0.450 NO +Name=TCONS_00000304 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000305 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.754 + max. Y 23 0.829 + max. S 13 0.964 + mean S 1-22 0.911 + D 1-22 0.873 0.450 YES +Name=TCONS_00000305 SP='YES' Cleavage site between pos. 22 and 23: AHA-LP D=0.873 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000306 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.147 + max. Y 30 0.120 + max. S 1 0.135 + mean S 1-29 0.103 + D 1-29 0.111 0.450 NO +Name=TCONS_00000306 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000307 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.754 + max. Y 23 0.829 + max. S 13 0.964 + mean S 1-22 0.911 + D 1-22 0.873 0.450 YES +Name=TCONS_00000307 SP='YES' Cleavage site between pos. 22 and 23: AHA-LP D=0.873 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000308 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.125 + max. Y 16 0.150 + max. S 5 0.231 + mean S 1-15 0.183 + D 1-15 0.168 0.450 NO +Name=TCONS_00000308 SP='NO' D=0.168 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000309 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.125 + max. Y 16 0.150 + max. S 5 0.231 + mean S 1-15 0.183 + D 1-15 0.168 0.450 NO +Name=TCONS_00000309 SP='NO' D=0.168 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000310 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.110 + max. Y 12 0.119 + max. S 21 0.227 + mean S 1-11 0.118 + D 1-11 0.118 0.450 NO +Name=TCONS_00000310 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000311 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.131 + max. Y 25 0.128 + max. S 32 0.234 + mean S 1-24 0.123 + D 1-24 0.125 0.450 NO +Name=TCONS_00000311 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000312 +# Measure Position Value Cutoff signal peptide? + max. C 27 0.125 + max. Y 12 0.120 + max. S 1 0.158 + mean S 1-11 0.126 + D 1-11 0.123 0.450 NO +Name=TCONS_00000312 SP='NO' D=0.123 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000313 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.116 + max. Y 11 0.139 + max. S 1 0.195 + mean S 1-10 0.167 + D 1-10 0.154 0.450 NO +Name=TCONS_00000313 SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000339 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 67 0.104 + max. S 57 0.112 + mean S 1-66 0.098 + D 1-66 0.101 0.450 NO +Name=TCONS_00000339 SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000340 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 67 0.104 + max. S 57 0.112 + mean S 1-66 0.098 + D 1-66 0.101 0.450 NO +Name=TCONS_00000340 SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000341 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 67 0.104 + max. S 57 0.112 + mean S 1-66 0.098 + D 1-66 0.101 0.450 NO +Name=TCONS_00000341 SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000342 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.108 + max. Y 19 0.110 + max. S 2 0.137 + mean S 1-18 0.111 + D 1-18 0.111 0.450 NO +Name=TCONS_00000342 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000343 +# Measure Position Value Cutoff signal peptide? + max. C 32 0.111 + max. Y 52 0.117 + max. S 45 0.142 + mean S 1-51 0.107 + D 1-51 0.111 0.450 NO +Name=TCONS_00000343 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000344 +# Measure Position Value Cutoff signal peptide? + max. C 32 0.120 + max. Y 57 0.110 + max. S 39 0.128 + mean S 1-56 0.103 + D 1-56 0.107 0.450 NO +Name=TCONS_00000344 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000345 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.112 + max. Y 17 0.122 + max. S 49 0.193 + mean S 1-16 0.133 + D 1-16 0.128 0.450 NO +Name=TCONS_00000345 SP='NO' D=0.128 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000348 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.112 + max. Y 13 0.108 + max. S 11 0.121 + mean S 1-12 0.109 + D 1-12 0.109 0.450 NO +Name=TCONS_00000348 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000349 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.112 + max. Y 13 0.108 + max. S 11 0.121 + mean S 1-12 0.109 + D 1-12 0.109 0.450 NO +Name=TCONS_00000349 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000350 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.112 + max. Y 13 0.108 + max. S 11 0.121 + mean S 1-12 0.109 + D 1-12 0.109 0.450 NO +Name=TCONS_00000350 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000351 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.113 + max. Y 34 0.109 + max. S 10 0.124 + mean S 1-33 0.108 + D 1-33 0.109 0.450 NO +Name=TCONS_00000351 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000352 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.110 + max. Y 48 0.106 + max. S 38 0.118 + mean S 1-47 0.098 + D 1-47 0.102 0.450 NO +Name=TCONS_00000352 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000353 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.110 + max. Y 48 0.106 + max. S 38 0.118 + mean S 1-47 0.098 + D 1-47 0.102 0.450 NO +Name=TCONS_00000353 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000354 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.110 + max. Y 48 0.106 + max. S 38 0.118 + mean S 1-47 0.098 + D 1-47 0.102 0.450 NO +Name=TCONS_00000354 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000355 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.115 + max. Y 39 0.137 + max. S 33 0.308 + mean S 1-38 0.138 + D 1-38 0.138 0.450 NO +Name=TCONS_00000355 SP='NO' D=0.138 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000356 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.246 + max. Y 41 0.264 + max. S 36 0.564 + mean S 1-40 0.256 + D 1-40 0.261 0.500 NO +Name=TCONS_00000356 SP='NO' D=0.261 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000357 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.246 + max. Y 41 0.264 + max. S 36 0.564 + mean S 1-40 0.256 + D 1-40 0.261 0.500 NO +Name=TCONS_00000357 SP='NO' D=0.261 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000358 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.246 + max. Y 41 0.264 + max. S 36 0.564 + mean S 1-40 0.256 + D 1-40 0.261 0.500 NO +Name=TCONS_00000358 SP='NO' D=0.261 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000359 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.246 + max. Y 41 0.264 + max. S 36 0.564 + mean S 1-40 0.256 + D 1-40 0.261 0.500 NO +Name=TCONS_00000359 SP='NO' D=0.261 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000360 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.246 + max. Y 41 0.264 + max. S 36 0.564 + mean S 1-40 0.256 + D 1-40 0.261 0.500 NO +Name=TCONS_00000360 SP='NO' D=0.261 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000372 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.629 + max. Y 26 0.557 + max. S 24 0.746 + mean S 1-25 0.522 + D 1-25 0.543 0.500 YES +Name=TCONS_00000372 SP='YES' Cleavage site between pos. 25 and 26: LSA-LD D=0.543 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000373 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.629 + max. Y 26 0.557 + max. S 24 0.746 + mean S 1-25 0.522 + D 1-25 0.543 0.500 YES +Name=TCONS_00000373 SP='YES' Cleavage site between pos. 25 and 26: LSA-LD D=0.543 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000374 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.118 + max. Y 11 0.129 + max. S 1 0.186 + mean S 1-10 0.127 + D 1-10 0.128 0.450 NO +Name=TCONS_00000374 SP='NO' D=0.128 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000385 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.135 + max. Y 28 0.143 + max. S 25 0.261 + mean S 1-27 0.148 + D 1-27 0.146 0.450 NO +Name=TCONS_00000385 SP='NO' D=0.146 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000386 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.135 + max. Y 28 0.143 + max. S 25 0.261 + mean S 1-27 0.148 + D 1-27 0.146 0.450 NO +Name=TCONS_00000386 SP='NO' D=0.146 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000388 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.135 + max. Y 28 0.143 + max. S 25 0.261 + mean S 1-27 0.148 + D 1-27 0.146 0.450 NO +Name=TCONS_00000388 SP='NO' D=0.146 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000389 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.135 + max. Y 28 0.143 + max. S 25 0.261 + mean S 1-27 0.148 + D 1-27 0.146 0.450 NO +Name=TCONS_00000389 SP='NO' D=0.146 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000390 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.141 + max. Y 20 0.116 + max. S 55 0.115 + mean S 1-19 0.095 + D 1-19 0.104 0.450 NO +Name=TCONS_00000390 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000391 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.672 + max. Y 19 0.310 + max. S 46 0.336 + mean S 1-18 0.144 + D 1-18 0.221 0.450 NO +Name=TCONS_00000391 SP='NO' D=0.221 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000397 +# Measure Position Value Cutoff signal peptide? + max. C 66 0.119 + max. Y 66 0.110 + max. S 66 0.157 + mean S 1-65 0.096 + D 1-65 0.105 0.500 NO +Name=TCONS_00000397 SP='NO' D=0.105 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000401 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.116 + max. Y 16 0.122 + max. S 13 0.188 + mean S 1-15 0.123 + D 1-15 0.122 0.450 NO +Name=TCONS_00000401 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000411 +# Measure Position Value Cutoff signal peptide? + max. C 68 0.145 + max. Y 68 0.125 + max. S 1 0.173 + mean S 1-67 0.107 + D 1-67 0.115 0.450 NO +Name=TCONS_00000411 SP='NO' D=0.115 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000412 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.114 + max. Y 12 0.125 + max. S 1 0.178 + mean S 1-11 0.115 + D 1-11 0.120 0.450 NO +Name=TCONS_00000412 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000413 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.112 + max. Y 51 0.110 + max. S 44 0.127 + mean S 1-50 0.105 + D 1-50 0.107 0.450 NO +Name=TCONS_00000413 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000414 +# Measure Position Value Cutoff signal peptide? + max. C 56 0.189 + max. Y 12 0.213 + max. S 1 0.492 + mean S 1-11 0.369 + D 1-11 0.297 0.450 NO +Name=TCONS_00000414 SP='NO' D=0.297 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000415 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.114 + max. Y 12 0.125 + max. S 1 0.178 + mean S 1-11 0.115 + D 1-11 0.120 0.450 NO +Name=TCONS_00000415 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000416 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.190 + max. Y 57 0.163 + max. S 6 0.192 + mean S 1-56 0.130 + D 1-56 0.145 0.450 NO +Name=TCONS_00000416 SP='NO' D=0.145 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000417 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.162 + max. Y 23 0.210 + max. S 2 0.372 + mean S 1-22 0.272 + D 1-22 0.243 0.450 NO +Name=TCONS_00000417 SP='NO' D=0.243 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000418 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.118 + max. Y 26 0.126 + max. S 8 0.193 + mean S 1-25 0.132 + D 1-25 0.129 0.450 NO +Name=TCONS_00000418 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000420 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.133 + max. Y 29 0.122 + max. S 2 0.155 + mean S 1-28 0.115 + D 1-28 0.118 0.450 NO +Name=TCONS_00000420 SP='NO' D=0.118 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000421 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.122 + max. Y 18 0.108 + max. S 32 0.117 + mean S 1-17 0.096 + D 1-17 0.102 0.450 NO +Name=TCONS_00000421 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000422 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.132 + max. Y 19 0.112 + max. S 32 0.121 + mean S 1-18 0.097 + D 1-18 0.104 0.450 NO +Name=TCONS_00000422 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000453 +# Measure Position Value Cutoff signal peptide? + max. C 61 0.147 + max. Y 19 0.141 + max. S 10 0.269 + mean S 1-18 0.178 + D 1-18 0.156 0.500 NO +Name=TCONS_00000453 SP='NO' D=0.156 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000454 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.336 + max. Y 19 0.388 + max. S 1 0.565 + mean S 1-18 0.460 + D 1-18 0.417 0.500 NO +Name=TCONS_00000454 SP='NO' D=0.417 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000455 +# Measure Position Value Cutoff signal peptide? + max. C 61 0.147 + max. Y 19 0.141 + max. S 10 0.269 + mean S 1-18 0.178 + D 1-18 0.156 0.500 NO +Name=TCONS_00000455 SP='NO' D=0.156 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000456 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.406 + max. Y 35 0.419 + max. S 32 0.705 + mean S 1-34 0.296 + D 1-34 0.370 0.500 NO +Name=TCONS_00000456 SP='NO' D=0.370 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000457 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.406 + max. Y 35 0.419 + max. S 32 0.705 + mean S 1-34 0.296 + D 1-34 0.370 0.500 NO +Name=TCONS_00000457 SP='NO' D=0.370 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000480 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.232 + max. Y 17 0.223 + max. S 2 0.587 + mean S 1-16 0.308 + D 1-16 0.269 0.450 NO +Name=TCONS_00000480 SP='NO' D=0.269 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000481 +# Measure Position Value Cutoff signal peptide? + max. C 43 0.161 + max. Y 46 0.172 + max. S 42 0.365 + mean S 1-45 0.170 + D 1-45 0.171 0.450 NO +Name=TCONS_00000481 SP='NO' D=0.171 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000493 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.306 + max. Y 26 0.505 + max. S 17 0.936 + mean S 1-25 0.831 + D 1-25 0.681 0.450 YES +Name=TCONS_00000493 SP='YES' Cleavage site between pos. 25 and 26: ATA-LE D=0.681 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000494 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.163 + max. Y 38 0.131 + max. S 10 0.165 + mean S 1-37 0.116 + D 1-37 0.123 0.450 NO +Name=TCONS_00000494 SP='NO' D=0.123 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000501 +# Measure Position Value Cutoff signal peptide? + max. C 55 0.115 + max. Y 12 0.143 + max. S 1 0.239 + mean S 1-11 0.150 + D 1-11 0.147 0.450 NO +Name=TCONS_00000501 SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000502 +# Measure Position Value Cutoff signal peptide? + max. C 55 0.115 + max. Y 12 0.143 + max. S 1 0.239 + mean S 1-11 0.150 + D 1-11 0.147 0.450 NO +Name=TCONS_00000502 SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000503 +# Measure Position Value Cutoff signal peptide? + max. C 55 0.115 + max. Y 12 0.143 + max. S 1 0.239 + mean S 1-11 0.150 + D 1-11 0.147 0.450 NO +Name=TCONS_00000503 SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000504 +# Measure Position Value Cutoff signal peptide? + max. C 50 0.126 + max. Y 50 0.124 + max. S 46 0.192 + mean S 1-49 0.110 + D 1-49 0.116 0.450 NO +Name=TCONS_00000504 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000505 +# Measure Position Value Cutoff signal peptide? + max. C 52 0.110 + max. Y 12 0.141 + max. S 1 0.231 + mean S 1-11 0.147 + D 1-11 0.144 0.450 NO +Name=TCONS_00000505 SP='NO' D=0.144 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000506 +# Measure Position Value Cutoff signal peptide? + max. C 49 0.110 + max. Y 11 0.110 + max. S 4 0.157 + mean S 1-10 0.120 + D 1-10 0.116 0.450 NO +Name=TCONS_00000506 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000507 +# Measure Position Value Cutoff signal peptide? + max. C 59 0.131 + max. Y 54 0.185 + max. S 42 0.422 + mean S 1-53 0.168 + D 1-53 0.176 0.450 NO +Name=TCONS_00000507 SP='NO' D=0.176 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000508 +# Measure Position Value Cutoff signal peptide? + max. C 59 0.131 + max. Y 54 0.185 + max. S 42 0.422 + mean S 1-53 0.168 + D 1-53 0.176 0.450 NO +Name=TCONS_00000508 SP='NO' D=0.176 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000509 +# Measure Position Value Cutoff signal peptide? + max. C 59 0.131 + max. Y 54 0.185 + max. S 42 0.422 + mean S 1-53 0.168 + D 1-53 0.176 0.450 NO +Name=TCONS_00000509 SP='NO' D=0.176 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000511 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.466 + max. Y 28 0.581 + max. S 8 0.908 + mean S 1-27 0.739 + D 1-27 0.666 0.450 YES +Name=TCONS_00000511 SP='YES' Cleavage site between pos. 27 and 28: VSA-AR D=0.666 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000512 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.466 + max. Y 28 0.581 + max. S 8 0.908 + mean S 1-27 0.739 + D 1-27 0.666 0.450 YES +Name=TCONS_00000512 SP='YES' Cleavage site between pos. 27 and 28: VSA-AR D=0.666 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000519 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.388 + max. Y 19 0.608 + max. S 14 0.979 + mean S 1-18 0.958 + D 1-18 0.797 0.450 YES +Name=TCONS_00000519 SP='YES' Cleavage site between pos. 18 and 19: LAA-VE D=0.797 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000520 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.388 + max. Y 19 0.608 + max. S 14 0.979 + mean S 1-18 0.958 + D 1-18 0.797 0.450 YES +Name=TCONS_00000520 SP='YES' Cleavage site between pos. 18 and 19: LAA-VE D=0.797 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000521 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.388 + max. Y 19 0.608 + max. S 14 0.979 + mean S 1-18 0.958 + D 1-18 0.797 0.450 YES +Name=TCONS_00000521 SP='YES' Cleavage site between pos. 18 and 19: LAA-VE D=0.797 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000531 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.235 + max. Y 37 0.160 + max. S 2 0.218 + mean S 1-36 0.128 + D 1-36 0.143 0.450 NO +Name=TCONS_00000531 SP='NO' D=0.143 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000532 +# Measure Position Value Cutoff signal peptide? + max. C 36 0.241 + max. Y 36 0.162 + max. S 1 0.227 + mean S 1-35 0.129 + D 1-35 0.144 0.450 NO +Name=TCONS_00000532 SP='NO' D=0.144 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000533 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.316 + max. Y 26 0.205 + max. S 16 0.268 + mean S 1-25 0.135 + D 1-25 0.167 0.450 NO +Name=TCONS_00000533 SP='NO' D=0.167 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000534 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.316 + max. Y 26 0.205 + max. S 16 0.268 + mean S 1-25 0.135 + D 1-25 0.167 0.450 NO +Name=TCONS_00000534 SP='NO' D=0.167 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000538 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.148 + max. Y 21 0.166 + max. S 1 0.271 + mean S 1-20 0.188 + D 1-20 0.178 0.450 NO +Name=TCONS_00000538 SP='NO' D=0.178 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000539 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.148 + max. Y 21 0.166 + max. S 1 0.271 + mean S 1-20 0.188 + D 1-20 0.178 0.450 NO +Name=TCONS_00000539 SP='NO' D=0.178 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000540 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.148 + max. Y 21 0.166 + max. S 1 0.271 + mean S 1-20 0.188 + D 1-20 0.178 0.450 NO +Name=TCONS_00000540 SP='NO' D=0.178 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000541 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.124 + max. Y 19 0.124 + max. S 47 0.162 + mean S 1-18 0.123 + D 1-18 0.124 0.450 NO +Name=TCONS_00000541 SP='NO' D=0.124 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000544 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.111 + max. Y 41 0.106 + max. S 43 0.114 + mean S 1-40 0.095 + D 1-40 0.100 0.450 NO +Name=TCONS_00000544 SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000545 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.252 + max. Y 18 0.386 + max. S 1 0.794 + mean S 1-17 0.530 + D 1-17 0.464 0.450 YES +Name=TCONS_00000545 SP='YES' Cleavage site between pos. 17 and 18: VRL-LK D=0.464 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000546 +# Measure Position Value Cutoff signal peptide? + max. C 53 0.137 + max. Y 53 0.114 + max. S 1 0.130 + mean S 1-52 0.094 + D 1-52 0.103 0.450 NO +Name=TCONS_00000546 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000547 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.178 + max. Y 20 0.142 + max. S 19 0.267 + mean S 1-19 0.117 + D 1-19 0.132 0.500 NO +Name=TCONS_00000547 SP='NO' D=0.132 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000548 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.178 + max. Y 20 0.142 + max. S 19 0.267 + mean S 1-19 0.117 + D 1-19 0.132 0.500 NO +Name=TCONS_00000548 SP='NO' D=0.132 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000549 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.178 + max. Y 20 0.142 + max. S 19 0.267 + mean S 1-19 0.117 + D 1-19 0.132 0.500 NO +Name=TCONS_00000549 SP='NO' D=0.132 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000550 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.283 + max. Y 26 0.259 + max. S 5 0.445 + mean S 1-25 0.303 + D 1-25 0.276 0.500 NO +Name=TCONS_00000550 SP='NO' D=0.276 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00000558 +# Measure Position Value Cutoff signal peptide? + max. C 12 0.140 + max. Y 12 0.111 + max. S 12 0.124 + mean S 1-11 0.098 + D 1-11 0.104 0.450 NO +Name=TCONS_00000558 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000559 +# Measure Position Value Cutoff signal peptide? + max. C 12 0.140 + max. Y 12 0.111 + max. S 12 0.124 + mean S 1-11 0.098 + D 1-11 0.104 0.450 NO +Name=TCONS_00000559 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000560 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.120 + max. Y 12 0.115 + max. S 1 0.142 + mean S 1-11 0.112 + D 1-11 0.113 0.450 NO +Name=TCONS_00000560 SP='NO' D=0.113 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00000561 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.123 + max. Y 16 0.132 + max. S 7 0.250 + mean S 1-15 0.155 + D 1-15 0.144 0.450 NO +Name=TCONS_00000561 SP='NO' D=0.144 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003841 +# Measure Position Value Cutoff signal peptide? + max. C 69 0.124 + max. Y 16 0.161 + max. S 21 0.337 + mean S 1-15 0.226 + D 1-15 0.196 0.450 NO +Name=TCONS_00003841 SP='NO' D=0.196 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003842 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.113 + max. Y 11 0.142 + max. S 1 0.214 + mean S 1-10 0.143 + D 1-10 0.143 0.450 NO +Name=TCONS_00003842 SP='NO' D=0.143 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003843 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.113 + max. Y 11 0.142 + max. S 1 0.214 + mean S 1-10 0.143 + D 1-10 0.143 0.450 NO +Name=TCONS_00003843 SP='NO' D=0.143 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003844 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.113 + max. Y 11 0.145 + max. S 1 0.227 + mean S 1-10 0.149 + D 1-10 0.148 0.450 NO +Name=TCONS_00003844 SP='NO' D=0.148 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003865 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.116 + max. Y 56 0.108 + max. S 46 0.119 + mean S 1-55 0.100 + D 1-55 0.104 0.450 NO +Name=TCONS_00003865 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003866 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.577 + max. Y 37 0.593 + max. S 27 0.813 + mean S 1-36 0.606 + D 1-36 0.598 0.500 YES +Name=TCONS_00003866 SP='YES' Cleavage site between pos. 36 and 37: ASA-RP D=0.598 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00003867 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.577 + max. Y 37 0.593 + max. S 27 0.813 + mean S 1-36 0.606 + D 1-36 0.598 0.500 YES +Name=TCONS_00003867 SP='YES' Cleavage site between pos. 36 and 37: ASA-RP D=0.598 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00003869 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.577 + max. Y 37 0.593 + max. S 27 0.813 + mean S 1-36 0.606 + D 1-36 0.598 0.500 YES +Name=TCONS_00003869 SP='YES' Cleavage site between pos. 36 and 37: ASA-RP D=0.598 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00003870 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.109 + max. Y 46 0.107 + max. S 24 0.121 + mean S 1-45 0.102 + D 1-45 0.104 0.450 NO +Name=TCONS_00003870 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003880 +# Measure Position Value Cutoff signal peptide? + max. C 32 0.115 + max. Y 32 0.113 + max. S 11 0.157 + mean S 1-31 0.115 + D 1-31 0.114 0.450 NO +Name=TCONS_00003880 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003881 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.148 + max. Y 29 0.137 + max. S 18 0.156 + mean S 1-28 0.127 + D 1-28 0.131 0.450 NO +Name=TCONS_00003881 SP='NO' D=0.131 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003882 +# Measure Position Value Cutoff signal peptide? + max. C 50 0.109 + max. Y 68 0.103 + max. S 46 0.118 + mean S 1-67 0.096 + D 1-67 0.099 0.450 NO +Name=TCONS_00003882 SP='NO' D=0.099 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003884 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.117 + max. Y 46 0.108 + max. S 23 0.118 + mean S 1-45 0.099 + D 1-45 0.103 0.450 NO +Name=TCONS_00003884 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003885 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.111 + max. Y 14 0.114 + max. S 4 0.144 + mean S 1-13 0.124 + D 1-13 0.119 0.450 NO +Name=TCONS_00003885 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003886 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.236 + max. Y 19 0.222 + max. S 12 0.322 + mean S 1-18 0.213 + D 1-18 0.217 0.450 NO +Name=TCONS_00003886 SP='NO' D=0.217 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003887 +# Measure Position Value Cutoff signal peptide? + max. C 47 0.115 + max. Y 21 0.118 + max. S 45 0.239 + mean S 1-20 0.121 + D 1-20 0.120 0.450 NO +Name=TCONS_00003887 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003888 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.112 + max. Y 14 0.114 + max. S 4 0.143 + mean S 1-13 0.123 + D 1-13 0.119 0.450 NO +Name=TCONS_00003888 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003891 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.114 + max. Y 38 0.107 + max. S 16 0.124 + mean S 1-37 0.096 + D 1-37 0.101 0.450 NO +Name=TCONS_00003891 SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003892 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.111 + max. Y 14 0.114 + max. S 4 0.144 + mean S 1-13 0.124 + D 1-13 0.119 0.450 NO +Name=TCONS_00003892 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003893 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.168 + max. Y 48 0.127 + max. S 12 0.130 + mean S 1-47 0.101 + D 1-47 0.113 0.450 NO +Name=TCONS_00003893 SP='NO' D=0.113 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003894 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.254 + max. Y 17 0.160 + max. S 2 0.157 + mean S 1-16 0.098 + D 1-16 0.126 0.450 NO +Name=TCONS_00003894 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003895 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.111 + max. Y 14 0.114 + max. S 4 0.144 + mean S 1-13 0.124 + D 1-13 0.119 0.450 NO +Name=TCONS_00003895 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003896 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.254 + max. Y 17 0.160 + max. S 2 0.157 + mean S 1-16 0.098 + D 1-16 0.126 0.450 NO +Name=TCONS_00003896 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003897 +# Measure Position Value Cutoff signal peptide? + max. C 54 0.126 + max. Y 12 0.119 + max. S 1 0.153 + mean S 1-11 0.105 + D 1-11 0.111 0.450 NO +Name=TCONS_00003897 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003899 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.181 + max. Y 45 0.130 + max. S 44 0.120 + mean S 1-44 0.093 + D 1-44 0.110 0.450 NO +Name=TCONS_00003899 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003900 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.119 + max. Y 11 0.140 + max. S 1 0.211 + mean S 1-10 0.168 + D 1-10 0.155 0.450 NO +Name=TCONS_00003900 SP='NO' D=0.155 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003901 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.177 + max. Y 20 0.405 + max. S 15 0.978 + mean S 1-19 0.928 + D 1-19 0.687 0.450 YES +Name=TCONS_00003901 SP='YES' Cleavage site between pos. 19 and 20: SSA-VL D=0.687 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003902 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.177 + max. Y 20 0.405 + max. S 15 0.978 + mean S 1-19 0.928 + D 1-19 0.687 0.450 YES +Name=TCONS_00003902 SP='YES' Cleavage site between pos. 19 and 20: SSA-VL D=0.687 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003903 +# Measure Position Value Cutoff signal peptide? + max. C 32 0.189 + max. Y 20 0.409 + max. S 15 0.981 + mean S 1-19 0.938 + D 1-19 0.695 0.450 YES +Name=TCONS_00003903 SP='YES' Cleavage site between pos. 19 and 20: SSA-VL D=0.695 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003904 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.177 + max. Y 20 0.405 + max. S 15 0.978 + mean S 1-19 0.928 + D 1-19 0.687 0.450 YES +Name=TCONS_00003904 SP='YES' Cleavage site between pos. 19 and 20: SSA-VL D=0.687 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003905 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.177 + max. Y 25 0.267 + max. S 20 0.514 + mean S 1-24 0.401 + D 1-24 0.340 0.450 NO +Name=TCONS_00003905 SP='NO' D=0.340 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003911 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.157 + max. Y 30 0.133 + max. S 3 0.148 + mean S 1-29 0.119 + D 1-29 0.125 0.450 NO +Name=TCONS_00003911 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003912 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.157 + max. Y 30 0.133 + max. S 3 0.148 + mean S 1-29 0.119 + D 1-29 0.125 0.450 NO +Name=TCONS_00003912 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003913 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.145 + max. Y 20 0.178 + max. S 2 0.303 + mean S 1-19 0.216 + D 1-19 0.198 0.450 NO +Name=TCONS_00003913 SP='NO' D=0.198 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003914 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.145 + max. Y 20 0.178 + max. S 2 0.303 + mean S 1-19 0.216 + D 1-19 0.198 0.450 NO +Name=TCONS_00003914 SP='NO' D=0.198 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003915 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.157 + max. Y 30 0.133 + max. S 3 0.148 + mean S 1-29 0.119 + D 1-29 0.125 0.450 NO +Name=TCONS_00003915 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003916 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.157 + max. Y 30 0.133 + max. S 3 0.148 + mean S 1-29 0.119 + D 1-29 0.125 0.450 NO +Name=TCONS_00003916 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003919 +# Measure Position Value Cutoff signal peptide? + max. C 47 0.113 + max. Y 47 0.138 + max. S 46 0.245 + mean S 1-46 0.142 + D 1-46 0.140 0.450 NO +Name=TCONS_00003919 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003920 +# Measure Position Value Cutoff signal peptide? + max. C 43 0.111 + max. Y 17 0.109 + max. S 41 0.119 + mean S 1-16 0.110 + D 1-16 0.109 0.450 NO +Name=TCONS_00003920 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003921 +# Measure Position Value Cutoff signal peptide? + max. C 43 0.111 + max. Y 17 0.109 + max. S 41 0.119 + mean S 1-16 0.110 + D 1-16 0.109 0.450 NO +Name=TCONS_00003921 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003923 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.176 + max. Y 23 0.137 + max. S 21 0.164 + mean S 1-22 0.107 + D 1-22 0.121 0.450 NO +Name=TCONS_00003923 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003924 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.176 + max. Y 23 0.137 + max. S 21 0.164 + mean S 1-22 0.107 + D 1-22 0.121 0.450 NO +Name=TCONS_00003924 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003925 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.176 + max. Y 23 0.137 + max. S 21 0.164 + mean S 1-22 0.107 + D 1-22 0.121 0.450 NO +Name=TCONS_00003925 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003937 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003937 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003938 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.149 + max. Y 19 0.190 + max. S 3 0.451 + mean S 1-18 0.212 + D 1-18 0.202 0.450 NO +Name=TCONS_00003938 SP='NO' D=0.202 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003939 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003939 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003940 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003940 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003941 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003941 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003942 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003942 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003943 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003943 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003959 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003959 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003962 +# Measure Position Value Cutoff signal peptide? + max. C 45 0.109 + max. Y 32 0.107 + max. S 23 0.121 + mean S 1-31 0.101 + D 1-31 0.104 0.450 NO +Name=TCONS_00003962 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003963 +# Measure Position Value Cutoff signal peptide? + max. C 38 0.182 + max. Y 11 0.165 + max. S 1 0.287 + mean S 1-10 0.209 + D 1-10 0.189 0.450 NO +Name=TCONS_00003963 SP='NO' D=0.189 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003964 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.123 + max. Y 34 0.111 + max. S 34 0.129 + mean S 1-33 0.102 + D 1-33 0.106 0.450 NO +Name=TCONS_00003964 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003965 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.123 + max. Y 34 0.111 + max. S 34 0.129 + mean S 1-33 0.102 + D 1-33 0.106 0.450 NO +Name=TCONS_00003965 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003966 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.123 + max. Y 34 0.111 + max. S 34 0.129 + mean S 1-33 0.102 + D 1-33 0.106 0.450 NO +Name=TCONS_00003966 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003967 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.123 + max. Y 34 0.111 + max. S 34 0.129 + mean S 1-33 0.102 + D 1-33 0.106 0.450 NO +Name=TCONS_00003967 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003968 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.119 + max. Y 19 0.123 + max. S 1 0.157 + mean S 1-18 0.121 + D 1-18 0.122 0.450 NO +Name=TCONS_00003968 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003984 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.110 + max. Y 21 0.116 + max. S 12 0.152 + mean S 1-20 0.123 + D 1-20 0.119 0.450 NO +Name=TCONS_00003984 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003985 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.110 + max. Y 21 0.119 + max. S 12 0.203 + mean S 1-20 0.131 + D 1-20 0.125 0.450 NO +Name=TCONS_00003985 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003987 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.110 + max. Y 21 0.116 + max. S 12 0.152 + mean S 1-20 0.123 + D 1-20 0.119 0.450 NO +Name=TCONS_00003987 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00003988 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.112 + max. Y 11 0.119 + max. S 3 0.177 + mean S 1-10 0.121 + D 1-10 0.120 0.450 NO +Name=TCONS_00003988 SP='NO' D=0.120 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004002 +# Measure Position Value Cutoff signal peptide? + max. C 27 0.458 + max. Y 27 0.503 + max. S 1 0.801 + mean S 1-26 0.609 + D 1-26 0.546 0.500 YES +Name=TCONS_00004002 SP='YES' Cleavage site between pos. 26 and 27: VAG-TH D=0.546 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004003 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.754 + max. Y 31 0.830 + max. S 28 0.959 + mean S 1-30 0.905 + D 1-30 0.870 0.450 YES +Name=TCONS_00004003 SP='YES' Cleavage site between pos. 30 and 31: VGA-SV D=0.870 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004004 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.116 + max. Y 25 0.138 + max. S 7 0.232 + mean S 1-24 0.168 + D 1-24 0.154 0.450 NO +Name=TCONS_00004004 SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004005 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.116 + max. Y 25 0.138 + max. S 7 0.232 + mean S 1-24 0.168 + D 1-24 0.154 0.450 NO +Name=TCONS_00004005 SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004006 +# Measure Position Value Cutoff signal peptide? + max. C 44 0.205 + max. Y 26 0.232 + max. S 13 0.419 + mean S 1-25 0.281 + D 1-25 0.259 0.450 NO +Name=TCONS_00004006 SP='NO' D=0.259 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004010 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.133 + max. Y 22 0.119 + max. S 1 0.135 + mean S 1-21 0.105 + D 1-21 0.111 0.450 NO +Name=TCONS_00004010 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004011 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.133 + max. Y 22 0.119 + max. S 1 0.135 + mean S 1-21 0.105 + D 1-21 0.111 0.450 NO +Name=TCONS_00004011 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004012 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.133 + max. Y 22 0.119 + max. S 1 0.135 + mean S 1-21 0.105 + D 1-21 0.111 0.450 NO +Name=TCONS_00004012 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004016 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.122 + max. Y 22 0.126 + max. S 20 0.214 + mean S 1-21 0.130 + D 1-21 0.128 0.450 NO +Name=TCONS_00004016 SP='NO' D=0.128 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004017 +# Measure Position Value Cutoff signal peptide? + max. C 47 0.164 + max. Y 47 0.160 + max. S 5 0.407 + mean S 1-46 0.182 + D 1-46 0.172 0.450 NO +Name=TCONS_00004017 SP='NO' D=0.172 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004022 +# Measure Position Value Cutoff signal peptide? + max. C 36 0.136 + max. Y 36 0.125 + max. S 35 0.208 + mean S 1-35 0.114 + D 1-35 0.119 0.450 NO +Name=TCONS_00004022 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004023 +# Measure Position Value Cutoff signal peptide? + max. C 70 0.127 + max. Y 70 0.111 + max. S 56 0.108 + mean S 1-69 0.095 + D 1-69 0.102 0.450 NO +Name=TCONS_00004023 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004024 +# Measure Position Value Cutoff signal peptide? + max. C 14 0.109 + max. Y 41 0.108 + max. S 28 0.122 + mean S 1-40 0.099 + D 1-40 0.103 0.450 NO +Name=TCONS_00004024 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004025 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.111 + max. Y 61 0.111 + max. S 41 0.163 + mean S 1-60 0.106 + D 1-60 0.108 0.450 NO +Name=TCONS_00004025 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004026 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.108 + max. Y 11 0.118 + max. S 1 0.148 + mean S 1-10 0.115 + D 1-10 0.117 0.450 NO +Name=TCONS_00004026 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004027 +# Measure Position Value Cutoff signal peptide? + max. C 57 0.109 + max. Y 47 0.104 + max. S 36 0.130 + mean S 1-46 0.094 + D 1-46 0.099 0.450 NO +Name=TCONS_00004027 SP='NO' D=0.099 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004028 +# Measure Position Value Cutoff signal peptide? + max. C 57 0.109 + max. Y 47 0.104 + max. S 36 0.130 + mean S 1-46 0.094 + D 1-46 0.099 0.450 NO +Name=TCONS_00004028 SP='NO' D=0.099 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004033 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.118 + max. Y 35 0.112 + max. S 16 0.137 + mean S 1-34 0.107 + D 1-34 0.110 0.450 NO +Name=TCONS_00004033 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004034 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.133 + max. Y 20 0.162 + max. S 1 0.274 + mean S 1-19 0.184 + D 1-19 0.174 0.450 NO +Name=TCONS_00004034 SP='NO' D=0.174 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004035 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.270 + max. Y 20 0.227 + max. S 13 0.242 + mean S 1-19 0.193 + D 1-19 0.208 0.450 NO +Name=TCONS_00004035 SP='NO' D=0.208 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004036 +# Measure Position Value Cutoff signal peptide? + max. C 61 0.116 + max. Y 61 0.107 + max. S 36 0.120 + mean S 1-60 0.098 + D 1-60 0.102 0.450 NO +Name=TCONS_00004036 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004037 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.131 + max. Y 12 0.170 + max. S 1 0.342 + mean S 1-11 0.197 + D 1-11 0.184 0.450 NO +Name=TCONS_00004037 SP='NO' D=0.184 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004042 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.612 + max. Y 25 0.747 + max. S 18 0.949 + mean S 1-24 0.914 + D 1-24 0.837 0.450 YES +Name=TCONS_00004042 SP='YES' Cleavage site between pos. 24 and 25: ARA-QG D=0.837 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004043 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.437 + max. Y 21 0.412 + max. S 2 0.837 + mean S 1-20 0.642 + D 1-20 0.504 0.500 YES +Name=TCONS_00004043 SP='YES' Cleavage site between pos. 20 and 21: LLA-GL D=0.504 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004044 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.121 + max. Y 19 0.132 + max. S 1 0.186 + mean S 1-18 0.134 + D 1-18 0.133 0.450 NO +Name=TCONS_00004044 SP='NO' D=0.133 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004046 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.616 + max. Y 25 0.751 + max. S 18 0.953 + mean S 1-24 0.919 + D 1-24 0.842 0.450 YES +Name=TCONS_00004046 SP='YES' Cleavage site between pos. 24 and 25: ARA-QG D=0.842 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004049 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.616 + max. Y 25 0.751 + max. S 18 0.953 + mean S 1-24 0.919 + D 1-24 0.842 0.450 YES +Name=TCONS_00004049 SP='YES' Cleavage site between pos. 24 and 25: ARA-QG D=0.842 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004051 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.616 + max. Y 25 0.751 + max. S 18 0.953 + mean S 1-24 0.919 + D 1-24 0.842 0.450 YES +Name=TCONS_00004051 SP='YES' Cleavage site between pos. 24 and 25: ARA-QG D=0.842 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004052 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.117 + max. Y 12 0.107 + max. S 55 0.115 + mean S 1-11 0.101 + D 1-11 0.104 0.450 NO +Name=TCONS_00004052 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004053 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.113 + max. Y 11 0.116 + max. S 2 0.178 + mean S 1-10 0.129 + D 1-10 0.123 0.450 NO +Name=TCONS_00004053 SP='NO' D=0.123 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004054 +# Measure Position Value Cutoff signal peptide? + max. C 12 0.110 + max. Y 12 0.125 + max. S 2 0.200 + mean S 1-11 0.126 + D 1-11 0.125 0.450 NO +Name=TCONS_00004054 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004055 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.112 + max. Y 56 0.110 + max. S 34 0.124 + mean S 1-55 0.101 + D 1-55 0.105 0.450 NO +Name=TCONS_00004055 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004056 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.112 + max. Y 56 0.110 + max. S 34 0.124 + mean S 1-55 0.101 + D 1-55 0.105 0.450 NO +Name=TCONS_00004056 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004058 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.112 + max. Y 56 0.110 + max. S 34 0.124 + mean S 1-55 0.101 + D 1-55 0.105 0.450 NO +Name=TCONS_00004058 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004059 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.119 + max. Y 30 0.111 + max. S 12 0.146 + mean S 1-29 0.105 + D 1-29 0.108 0.450 NO +Name=TCONS_00004059 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004060 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.110 + max. Y 11 0.108 + max. S 9 0.118 + mean S 1-10 0.112 + D 1-10 0.110 0.450 NO +Name=TCONS_00004060 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004061 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.116 + max. Y 11 0.130 + max. S 2 0.208 + mean S 1-10 0.138 + D 1-10 0.135 0.450 NO +Name=TCONS_00004061 SP='NO' D=0.135 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004062 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.116 + max. Y 11 0.130 + max. S 2 0.208 + mean S 1-10 0.138 + D 1-10 0.135 0.450 NO +Name=TCONS_00004062 SP='NO' D=0.135 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004066 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.231 + max. Y 19 0.208 + max. S 2 0.320 + mean S 1-18 0.166 + D 1-18 0.186 0.450 NO +Name=TCONS_00004066 SP='NO' D=0.186 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004067 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.230 + max. Y 23 0.233 + max. S 21 0.535 + mean S 1-22 0.237 + D 1-22 0.235 0.450 NO +Name=TCONS_00004067 SP='NO' D=0.235 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004068 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.231 + max. Y 19 0.208 + max. S 2 0.320 + mean S 1-18 0.166 + D 1-18 0.186 0.450 NO +Name=TCONS_00004068 SP='NO' D=0.186 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004077 +# Measure Position Value Cutoff signal peptide? + max. C 9 0.135 + max. Y 11 0.116 + max. S 1 0.149 + mean S 1-10 0.110 + D 1-10 0.113 0.450 NO +Name=TCONS_00004077 SP='NO' D=0.113 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004078 +# Measure Position Value Cutoff signal peptide? + max. C 63 0.108 + max. Y 12 0.125 + max. S 1 0.173 + mean S 1-11 0.125 + D 1-11 0.125 0.450 NO +Name=TCONS_00004078 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004079 +# Measure Position Value Cutoff signal peptide? + max. C 48 0.110 + max. Y 61 0.105 + max. S 12 0.117 + mean S 1-60 0.099 + D 1-60 0.102 0.450 NO +Name=TCONS_00004079 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004080 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.109 + max. Y 31 0.115 + max. S 20 0.138 + mean S 1-30 0.117 + D 1-30 0.116 0.450 NO +Name=TCONS_00004080 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004081 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.109 + max. Y 31 0.115 + max. S 20 0.138 + mean S 1-30 0.117 + D 1-30 0.116 0.450 NO +Name=TCONS_00004081 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004082 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.110 + max. Y 11 0.104 + max. S 1 0.112 + mean S 1-10 0.100 + D 1-10 0.102 0.450 NO +Name=TCONS_00004082 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004085 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.201 + max. Y 29 0.222 + max. S 28 0.484 + mean S 1-28 0.227 + D 1-28 0.225 0.450 NO +Name=TCONS_00004085 SP='NO' D=0.225 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004086 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 17 0.113 + max. S 5 0.131 + mean S 1-16 0.115 + D 1-16 0.114 0.450 NO +Name=TCONS_00004086 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004087 +# Measure Position Value Cutoff signal peptide? + max. C 67 0.117 + max. Y 12 0.129 + max. S 3 0.193 + mean S 1-11 0.159 + D 1-11 0.145 0.450 NO +Name=TCONS_00004087 SP='NO' D=0.145 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004088 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 17 0.113 + max. S 5 0.131 + mean S 1-16 0.115 + D 1-16 0.114 0.450 NO +Name=TCONS_00004088 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004089 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 17 0.113 + max. S 48 0.141 + mean S 1-16 0.115 + D 1-16 0.114 0.450 NO +Name=TCONS_00004089 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004090 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 17 0.113 + max. S 5 0.131 + mean S 1-16 0.115 + D 1-16 0.114 0.450 NO +Name=TCONS_00004090 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004091 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.183 + max. Y 24 0.260 + max. S 1 0.587 + mean S 1-23 0.378 + D 1-23 0.324 0.450 NO +Name=TCONS_00004091 SP='NO' D=0.324 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004092 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 17 0.113 + max. S 5 0.131 + mean S 1-16 0.115 + D 1-16 0.114 0.450 NO +Name=TCONS_00004092 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004093 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.129 + max. Y 14 0.179 + max. S 12 0.401 + mean S 1-13 0.283 + D 1-13 0.235 0.450 NO +Name=TCONS_00004093 SP='NO' D=0.235 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004102 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.158 + max. Y 29 0.171 + max. S 4 0.334 + mean S 1-28 0.215 + D 1-28 0.189 0.500 NO +Name=TCONS_00004102 SP='NO' D=0.189 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004103 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.158 + max. Y 29 0.171 + max. S 4 0.334 + mean S 1-28 0.215 + D 1-28 0.189 0.500 NO +Name=TCONS_00004103 SP='NO' D=0.189 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004104 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.158 + max. Y 29 0.171 + max. S 4 0.334 + mean S 1-28 0.215 + D 1-28 0.189 0.500 NO +Name=TCONS_00004104 SP='NO' D=0.189 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004110 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.771 + max. Y 29 0.804 + max. S 9 0.935 + mean S 1-28 0.853 + D 1-28 0.830 0.450 YES +Name=TCONS_00004110 SP='YES' Cleavage site between pos. 28 and 29: VWA-AR D=0.830 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004111 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.771 + max. Y 29 0.804 + max. S 9 0.935 + mean S 1-28 0.853 + D 1-28 0.830 0.450 YES +Name=TCONS_00004111 SP='YES' Cleavage site between pos. 28 and 29: VWA-AR D=0.830 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004112 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.771 + max. Y 29 0.804 + max. S 9 0.935 + mean S 1-28 0.853 + D 1-28 0.830 0.450 YES +Name=TCONS_00004112 SP='YES' Cleavage site between pos. 28 and 29: VWA-AR D=0.830 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004119 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.128 + max. Y 65 0.110 + max. S 3 0.126 + mean S 1-64 0.097 + D 1-64 0.103 0.450 NO +Name=TCONS_00004119 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004120 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.128 + max. Y 65 0.110 + max. S 3 0.126 + mean S 1-64 0.097 + D 1-64 0.103 0.450 NO +Name=TCONS_00004120 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004121 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.111 + max. Y 35 0.111 + max. S 19 0.134 + mean S 1-34 0.110 + D 1-34 0.111 0.450 NO +Name=TCONS_00004121 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004122 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.111 + max. Y 35 0.111 + max. S 19 0.134 + mean S 1-34 0.110 + D 1-34 0.111 0.450 NO +Name=TCONS_00004122 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004123 +# Measure Position Value Cutoff signal peptide? + max. C 50 0.112 + max. Y 50 0.108 + max. S 43 0.121 + mean S 1-49 0.098 + D 1-49 0.103 0.450 NO +Name=TCONS_00004123 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004132 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.168 + max. Y 18 0.133 + max. S 7 0.127 + mean S 1-17 0.107 + D 1-17 0.119 0.450 NO +Name=TCONS_00004132 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004133 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.124 + max. Y 14 0.131 + max. S 7 0.186 + mean S 1-13 0.154 + D 1-13 0.144 0.450 NO +Name=TCONS_00004133 SP='NO' D=0.144 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004142 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.201 + max. Y 39 0.173 + max. S 26 0.234 + mean S 1-38 0.151 + D 1-38 0.161 0.450 NO +Name=TCONS_00004142 SP='NO' D=0.161 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004143 +# Measure Position Value Cutoff signal peptide? + max. C 39 0.201 + max. Y 39 0.173 + max. S 26 0.234 + mean S 1-38 0.151 + D 1-38 0.161 0.450 NO +Name=TCONS_00004143 SP='NO' D=0.161 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004144 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.110 + max. Y 11 0.119 + max. S 1 0.139 + mean S 1-10 0.124 + D 1-10 0.122 0.450 NO +Name=TCONS_00004144 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004145 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.110 + max. Y 42 0.107 + max. S 44 0.114 + mean S 1-41 0.098 + D 1-41 0.102 0.450 NO +Name=TCONS_00004145 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004146 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.328 + max. Y 31 0.212 + max. S 2 0.262 + mean S 1-30 0.154 + D 1-30 0.180 0.450 NO +Name=TCONS_00004146 SP='NO' D=0.180 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004179 +# Measure Position Value Cutoff signal peptide? + max. C 70 0.117 + max. Y 11 0.147 + max. S 2 0.247 + mean S 1-10 0.167 + D 1-10 0.158 0.450 NO +Name=TCONS_00004179 SP='NO' D=0.158 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004180 +# Measure Position Value Cutoff signal peptide? + max. C 70 0.117 + max. Y 11 0.147 + max. S 2 0.247 + mean S 1-10 0.167 + D 1-10 0.158 0.450 NO +Name=TCONS_00004180 SP='NO' D=0.158 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004181 +# Measure Position Value Cutoff signal peptide? + max. C 70 0.117 + max. Y 11 0.147 + max. S 2 0.247 + mean S 1-10 0.167 + D 1-10 0.158 0.450 NO +Name=TCONS_00004181 SP='NO' D=0.158 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004182 +# Measure Position Value Cutoff signal peptide? + max. C 64 0.108 + max. Y 11 0.118 + max. S 1 0.155 + mean S 1-10 0.110 + D 1-10 0.114 0.450 NO +Name=TCONS_00004182 SP='NO' D=0.114 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004184 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.110 + max. Y 11 0.114 + max. S 4 0.137 + mean S 1-10 0.123 + D 1-10 0.119 0.450 NO +Name=TCONS_00004184 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004185 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.110 + max. Y 11 0.114 + max. S 4 0.137 + mean S 1-10 0.123 + D 1-10 0.119 0.450 NO +Name=TCONS_00004185 SP='NO' D=0.119 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004189 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.210 + max. Y 33 0.148 + max. S 10 0.162 + mean S 1-32 0.110 + D 1-32 0.127 0.450 NO +Name=TCONS_00004189 SP='NO' D=0.127 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004190 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.123 + max. Y 17 0.171 + max. S 13 0.440 + mean S 1-16 0.264 + D 1-16 0.221 0.450 NO +Name=TCONS_00004190 SP='NO' D=0.221 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004191 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.210 + max. Y 33 0.148 + max. S 10 0.162 + mean S 1-32 0.110 + D 1-32 0.127 0.450 NO +Name=TCONS_00004191 SP='NO' D=0.127 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004192 +# Measure Position Value Cutoff signal peptide? + max. C 40 0.169 + max. Y 40 0.141 + max. S 31 0.170 + mean S 1-39 0.113 + D 1-39 0.126 0.450 NO +Name=TCONS_00004192 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004193 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.210 + max. Y 33 0.148 + max. S 10 0.163 + mean S 1-32 0.110 + D 1-32 0.128 0.450 NO +Name=TCONS_00004193 SP='NO' D=0.128 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004194 +# Measure Position Value Cutoff signal peptide? + max. C 40 0.169 + max. Y 40 0.141 + max. S 31 0.170 + mean S 1-39 0.113 + D 1-39 0.126 0.450 NO +Name=TCONS_00004194 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004196 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.210 + max. Y 33 0.148 + max. S 10 0.162 + mean S 1-32 0.110 + D 1-32 0.127 0.450 NO +Name=TCONS_00004196 SP='NO' D=0.127 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004197 +# Measure Position Value Cutoff signal peptide? + max. C 36 0.197 + max. Y 36 0.140 + max. S 13 0.165 + mean S 1-35 0.105 + D 1-35 0.121 0.450 NO +Name=TCONS_00004197 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004208 +# Measure Position Value Cutoff signal peptide? + max. C 14 0.129 + max. Y 37 0.111 + max. S 11 0.121 + mean S 1-36 0.098 + D 1-36 0.104 0.450 NO +Name=TCONS_00004208 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004209 +# Measure Position Value Cutoff signal peptide? + max. C 29 0.147 + max. Y 29 0.127 + max. S 6 0.230 + mean S 1-28 0.117 + D 1-28 0.121 0.450 NO +Name=TCONS_00004209 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004210 +# Measure Position Value Cutoff signal peptide? + max. C 36 0.116 + max. Y 36 0.107 + max. S 12 0.128 + mean S 1-35 0.099 + D 1-35 0.103 0.450 NO +Name=TCONS_00004210 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004219 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.117 + max. Y 62 0.106 + max. S 30 0.122 + mean S 1-61 0.100 + D 1-61 0.103 0.450 NO +Name=TCONS_00004219 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004220 +# Measure Position Value Cutoff signal peptide? + max. C 27 0.111 + max. Y 61 0.106 + max. S 45 0.114 + mean S 1-60 0.101 + D 1-60 0.103 0.450 NO +Name=TCONS_00004220 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004221 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.125 + max. Y 52 0.109 + max. S 32 0.126 + mean S 1-51 0.104 + D 1-51 0.107 0.450 NO +Name=TCONS_00004221 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004224 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.113 + max. Y 16 0.107 + max. S 29 0.127 + mean S 1-15 0.098 + D 1-15 0.102 0.450 NO +Name=TCONS_00004224 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004225 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.109 + max. Y 67 0.107 + max. S 45 0.132 + mean S 1-66 0.103 + D 1-66 0.105 0.450 NO +Name=TCONS_00004225 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004226 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.109 + max. Y 46 0.106 + max. S 29 0.130 + mean S 1-45 0.102 + D 1-45 0.104 0.450 NO +Name=TCONS_00004226 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004227 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.109 + max. Y 46 0.106 + max. S 29 0.130 + mean S 1-45 0.102 + D 1-45 0.104 0.450 NO +Name=TCONS_00004227 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004228 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.118 + max. Y 11 0.172 + max. S 2 0.438 + mean S 1-10 0.269 + D 1-10 0.225 0.450 NO +Name=TCONS_00004228 SP='NO' D=0.225 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004229 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.108 + max. Y 11 0.109 + max. S 1 0.127 + mean S 1-10 0.100 + D 1-10 0.104 0.450 NO +Name=TCONS_00004229 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004230 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.108 + max. Y 11 0.109 + max. S 1 0.127 + mean S 1-10 0.100 + D 1-10 0.104 0.450 NO +Name=TCONS_00004230 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004231 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.118 + max. Y 70 0.107 + max. S 1 0.114 + mean S 1-69 0.098 + D 1-69 0.102 0.450 NO +Name=TCONS_00004231 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004232 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.111 + max. Y 31 0.103 + max. S 23 0.106 + mean S 1-30 0.097 + D 1-30 0.100 0.450 NO +Name=TCONS_00004232 SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004233 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.111 + max. Y 31 0.103 + max. S 23 0.106 + mean S 1-30 0.097 + D 1-30 0.100 0.450 NO +Name=TCONS_00004233 SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004234 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.111 + max. Y 31 0.103 + max. S 23 0.106 + mean S 1-30 0.097 + D 1-30 0.100 0.450 NO +Name=TCONS_00004234 SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004235 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.128 + max. Y 16 0.122 + max. S 3 0.184 + mean S 1-15 0.141 + D 1-15 0.132 0.450 NO +Name=TCONS_00004235 SP='NO' D=0.132 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004236 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.128 + max. Y 16 0.122 + max. S 3 0.184 + mean S 1-15 0.141 + D 1-15 0.132 0.450 NO +Name=TCONS_00004236 SP='NO' D=0.132 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004237 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.108 + max. Y 13 0.116 + max. S 1 0.157 + mean S 1-12 0.101 + D 1-12 0.108 0.450 NO +Name=TCONS_00004237 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004240 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.118 + max. Y 26 0.125 + max. S 8 0.190 + mean S 1-25 0.130 + D 1-25 0.128 0.450 NO +Name=TCONS_00004240 SP='NO' D=0.128 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004241 +# Measure Position Value Cutoff signal peptide? + max. C 21 0.142 + max. Y 17 0.184 + max. S 14 0.365 + mean S 1-16 0.243 + D 1-16 0.216 0.450 NO +Name=TCONS_00004241 SP='NO' D=0.216 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004265 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.219 + max. Y 33 0.274 + max. S 31 0.564 + mean S 1-32 0.319 + D 1-32 0.298 0.450 NO +Name=TCONS_00004265 SP='NO' D=0.298 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004266 +# Measure Position Value Cutoff signal peptide? + max. C 55 0.108 + max. Y 12 0.106 + max. S 33 0.124 + mean S 1-11 0.098 + D 1-11 0.102 0.450 NO +Name=TCONS_00004266 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004267 +# Measure Position Value Cutoff signal peptide? + max. C 43 0.110 + max. Y 43 0.110 + max. S 2 0.128 + mean S 1-42 0.108 + D 1-42 0.109 0.450 NO +Name=TCONS_00004267 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004268 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.114 + max. Y 12 0.108 + max. S 1 0.112 + mean S 1-11 0.106 + D 1-11 0.107 0.450 NO +Name=TCONS_00004268 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004269 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.109 + max. Y 58 0.105 + max. S 7 0.114 + mean S 1-57 0.097 + D 1-57 0.100 0.450 NO +Name=TCONS_00004269 SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004270 +# Measure Position Value Cutoff signal peptide? + max. C 16 0.133 + max. Y 16 0.119 + max. S 11 0.124 + mean S 1-15 0.108 + D 1-15 0.113 0.450 NO +Name=TCONS_00004270 SP='NO' D=0.113 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004271 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.112 + max. Y 18 0.106 + max. S 57 0.120 + mean S 1-17 0.102 + D 1-17 0.104 0.450 NO +Name=TCONS_00004271 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004272 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.115 + max. Y 24 0.111 + max. S 13 0.133 + mean S 1-23 0.107 + D 1-23 0.109 0.450 NO +Name=TCONS_00004272 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004273 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.173 + max. Y 17 0.127 + max. S 15 0.119 + mean S 1-16 0.092 + D 1-16 0.108 0.450 NO +Name=TCONS_00004273 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004274 +# Measure Position Value Cutoff signal peptide? + max. C 18 0.111 + max. Y 18 0.113 + max. S 13 0.171 + mean S 1-17 0.118 + D 1-17 0.116 0.450 NO +Name=TCONS_00004274 SP='NO' D=0.116 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004276 +# Measure Position Value Cutoff signal peptide? + max. C 36 0.126 + max. Y 39 0.116 + max. S 50 0.233 + mean S 1-38 0.104 + D 1-38 0.109 0.450 NO +Name=TCONS_00004276 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004277 +# Measure Position Value Cutoff signal peptide? + max. C 66 0.139 + max. Y 11 0.134 + max. S 2 0.274 + mean S 1-10 0.170 + D 1-10 0.148 0.500 NO +Name=TCONS_00004277 SP='NO' D=0.148 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004278 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.496 + max. Y 22 0.681 + max. S 7 0.958 + mean S 1-21 0.934 + D 1-21 0.818 0.450 YES +Name=TCONS_00004278 SP='YES' Cleavage site between pos. 21 and 22: AAA-VY D=0.818 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004279 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.496 + max. Y 22 0.681 + max. S 7 0.958 + mean S 1-21 0.934 + D 1-21 0.818 0.450 YES +Name=TCONS_00004279 SP='YES' Cleavage site between pos. 21 and 22: AAA-VY D=0.818 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004280 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.496 + max. Y 22 0.681 + max. S 7 0.958 + mean S 1-21 0.934 + D 1-21 0.818 0.450 YES +Name=TCONS_00004280 SP='YES' Cleavage site between pos. 21 and 22: AAA-VY D=0.818 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004281 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.496 + max. Y 22 0.681 + max. S 7 0.958 + mean S 1-21 0.934 + D 1-21 0.818 0.450 YES +Name=TCONS_00004281 SP='YES' Cleavage site between pos. 21 and 22: AAA-VY D=0.818 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004288 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.127 + max. Y 25 0.120 + max. S 3 0.161 + mean S 1-24 0.115 + D 1-24 0.117 0.450 NO +Name=TCONS_00004288 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004289 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.168 + max. Y 23 0.183 + max. S 2 0.377 + mean S 1-22 0.198 + D 1-22 0.191 0.450 NO +Name=TCONS_00004289 SP='NO' D=0.191 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004290 +# Measure Position Value Cutoff signal peptide? + max. C 37 0.115 + max. Y 13 0.108 + max. S 11 0.137 + mean S 1-12 0.108 + D 1-12 0.108 0.450 NO +Name=TCONS_00004290 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004291 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.114 + max. Y 17 0.108 + max. S 1 0.115 + mean S 1-16 0.099 + D 1-16 0.103 0.450 NO +Name=TCONS_00004291 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004293 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.125 + max. Y 11 0.127 + max. S 1 0.175 + mean S 1-10 0.130 + D 1-10 0.129 0.450 NO +Name=TCONS_00004293 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004294 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.125 + max. Y 11 0.127 + max. S 1 0.175 + mean S 1-10 0.130 + D 1-10 0.129 0.450 NO +Name=TCONS_00004294 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004295 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.125 + max. Y 11 0.127 + max. S 1 0.175 + mean S 1-10 0.130 + D 1-10 0.129 0.450 NO +Name=TCONS_00004295 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004296 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.125 + max. Y 11 0.127 + max. S 1 0.175 + mean S 1-10 0.130 + D 1-10 0.129 0.450 NO +Name=TCONS_00004296 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004297 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.125 + max. Y 11 0.127 + max. S 1 0.175 + mean S 1-10 0.130 + D 1-10 0.129 0.450 NO +Name=TCONS_00004297 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004298 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.125 + max. Y 11 0.127 + max. S 1 0.175 + mean S 1-10 0.130 + D 1-10 0.129 0.450 NO +Name=TCONS_00004298 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004310 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.134 + max. Y 23 0.185 + max. S 2 0.374 + mean S 1-22 0.254 + D 1-22 0.222 0.450 NO +Name=TCONS_00004310 SP='NO' D=0.222 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004311 +# Measure Position Value Cutoff signal peptide? + max. C 58 0.107 + max. Y 58 0.103 + max. S 43 0.106 + mean S 1-57 0.093 + D 1-57 0.098 0.450 NO +Name=TCONS_00004311 SP='NO' D=0.098 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004317 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.133 + max. Y 51 0.113 + max. S 32 0.166 + mean S 1-50 0.101 + D 1-50 0.107 0.450 NO +Name=TCONS_00004317 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004318 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.133 + max. Y 51 0.113 + max. S 32 0.166 + mean S 1-50 0.101 + D 1-50 0.107 0.450 NO +Name=TCONS_00004318 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004319 +# Measure Position Value Cutoff signal peptide? + max. C 30 0.120 + max. Y 11 0.136 + max. S 4 0.282 + mean S 1-10 0.176 + D 1-10 0.157 0.450 NO +Name=TCONS_00004319 SP='NO' D=0.157 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004320 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.113 + max. Y 36 0.111 + max. S 19 0.144 + mean S 1-35 0.105 + D 1-35 0.108 0.450 NO +Name=TCONS_00004320 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004321 +# Measure Position Value Cutoff signal peptide? + max. C 46 0.113 + max. Y 36 0.111 + max. S 19 0.144 + mean S 1-35 0.105 + D 1-35 0.108 0.450 NO +Name=TCONS_00004321 SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004322 +# Measure Position Value Cutoff signal peptide? + max. C 19 0.151 + max. Y 19 0.187 + max. S 3 0.322 + mean S 1-18 0.215 + D 1-18 0.202 0.450 NO +Name=TCONS_00004322 SP='NO' D=0.202 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004323 +# Measure Position Value Cutoff signal peptide? + max. C 34 0.119 + max. Y 21 0.116 + max. S 4 0.145 + mean S 1-20 0.125 + D 1-20 0.121 0.450 NO +Name=TCONS_00004323 SP='NO' D=0.121 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004324 +# Measure Position Value Cutoff signal peptide? + max. C 36 0.109 + max. Y 12 0.168 + max. S 1 0.336 + mean S 1-11 0.257 + D 1-11 0.204 0.500 NO +Name=TCONS_00004324 SP='NO' D=0.204 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004325 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.132 + max. Y 20 0.130 + max. S 2 0.155 + mean S 1-19 0.124 + D 1-19 0.126 0.450 NO +Name=TCONS_00004325 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004326 +# Measure Position Value Cutoff signal peptide? + max. C 27 0.126 + max. Y 11 0.127 + max. S 1 0.181 + mean S 1-10 0.131 + D 1-10 0.129 0.450 NO +Name=TCONS_00004326 SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004327 +# Measure Position Value Cutoff signal peptide? + max. C 59 0.110 + max. Y 59 0.107 + max. S 35 0.120 + mean S 1-58 0.100 + D 1-58 0.104 0.450 NO +Name=TCONS_00004327 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004328 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.251 + max. Y 28 0.179 + max. S 27 0.182 + mean S 1-27 0.132 + D 1-27 0.154 0.450 NO +Name=TCONS_00004328 SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004329 +# Measure Position Value Cutoff signal peptide? + max. C 59 0.110 + max. Y 59 0.107 + max. S 35 0.120 + mean S 1-58 0.100 + D 1-58 0.104 0.450 NO +Name=TCONS_00004329 SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004330 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.251 + max. Y 28 0.179 + max. S 27 0.182 + mean S 1-27 0.132 + D 1-27 0.154 0.450 NO +Name=TCONS_00004330 SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004332 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.251 + max. Y 28 0.182 + max. S 27 0.184 + mean S 1-27 0.135 + D 1-27 0.157 0.450 NO +Name=TCONS_00004332 SP='NO' D=0.157 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004333 +# Measure Position Value Cutoff signal peptide? + max. C 28 0.251 + max. Y 28 0.179 + max. S 27 0.182 + mean S 1-27 0.132 + D 1-27 0.154 0.450 NO +Name=TCONS_00004333 SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004334 +# Measure Position Value Cutoff signal peptide? + max. C 50 0.114 + max. Y 17 0.110 + max. S 1 0.131 + mean S 1-16 0.108 + D 1-16 0.109 0.450 NO +Name=TCONS_00004334 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004335 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.109 + max. Y 12 0.109 + max. S 3 0.136 + mean S 1-11 0.113 + D 1-11 0.111 0.450 NO +Name=TCONS_00004335 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004336 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.109 + max. Y 12 0.109 + max. S 3 0.136 + mean S 1-11 0.113 + D 1-11 0.111 0.450 NO +Name=TCONS_00004336 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004337 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.109 + max. Y 12 0.109 + max. S 3 0.136 + mean S 1-11 0.113 + D 1-11 0.111 0.450 NO +Name=TCONS_00004337 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004338 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.109 + max. Y 12 0.109 + max. S 3 0.136 + mean S 1-11 0.113 + D 1-11 0.111 0.450 NO +Name=TCONS_00004338 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004340 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.109 + max. Y 12 0.109 + max. S 3 0.136 + mean S 1-11 0.113 + D 1-11 0.111 0.450 NO +Name=TCONS_00004340 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004342 +# Measure Position Value Cutoff signal peptide? + max. C 60 0.109 + max. Y 12 0.109 + max. S 3 0.136 + mean S 1-11 0.113 + D 1-11 0.111 0.450 NO +Name=TCONS_00004342 SP='NO' D=0.111 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004343 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.108 + max. Y 12 0.111 + max. S 3 0.173 + mean S 1-11 0.122 + D 1-11 0.117 0.450 NO +Name=TCONS_00004343 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004344 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.110 + max. Y 60 0.122 + max. S 56 0.197 + mean S 1-59 0.109 + D 1-59 0.117 0.500 NO +Name=TCONS_00004344 SP='NO' D=0.117 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004345 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.121 + max. Y 22 0.133 + max. S 7 0.197 + mean S 1-21 0.146 + D 1-21 0.140 0.450 NO +Name=TCONS_00004345 SP='NO' D=0.140 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004346 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.172 + max. Y 12 0.246 + max. S 1 0.655 + mean S 1-11 0.442 + D 1-11 0.352 0.450 NO +Name=TCONS_00004346 SP='NO' D=0.352 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004347 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.172 + max. Y 12 0.246 + max. S 1 0.655 + mean S 1-11 0.442 + D 1-11 0.352 0.450 NO +Name=TCONS_00004347 SP='NO' D=0.352 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004348 +# Measure Position Value Cutoff signal peptide? + max. C 70 0.146 + max. Y 56 0.122 + max. S 52 0.228 + mean S 1-55 0.106 + D 1-55 0.116 0.500 NO +Name=TCONS_00004348 SP='NO' D=0.116 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004349 +# Measure Position Value Cutoff signal peptide? + max. C 25 0.172 + max. Y 12 0.246 + max. S 1 0.655 + mean S 1-11 0.442 + D 1-11 0.352 0.450 NO +Name=TCONS_00004349 SP='NO' D=0.352 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004356 +# Measure Position Value Cutoff signal peptide? + max. C 23 0.125 + max. Y 11 0.137 + max. S 20 0.235 + mean S 1-10 0.153 + D 1-10 0.146 0.450 NO +Name=TCONS_00004356 SP='NO' D=0.146 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004357 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.134 + max. Y 18 0.120 + max. S 12 0.151 + mean S 1-17 0.124 + D 1-17 0.122 0.450 NO +Name=TCONS_00004357 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004359 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.134 + max. Y 18 0.120 + max. S 12 0.151 + mean S 1-17 0.124 + D 1-17 0.122 0.450 NO +Name=TCONS_00004359 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004360 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.134 + max. Y 18 0.120 + max. S 12 0.151 + mean S 1-17 0.124 + D 1-17 0.122 0.450 NO +Name=TCONS_00004360 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004361 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.109 + max. Y 40 0.113 + max. S 22 0.151 + mean S 1-39 0.106 + D 1-39 0.109 0.450 NO +Name=TCONS_00004361 SP='NO' D=0.109 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004362 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.134 + max. Y 18 0.120 + max. S 12 0.151 + mean S 1-17 0.124 + D 1-17 0.122 0.450 NO +Name=TCONS_00004362 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004363 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.134 + max. Y 18 0.120 + max. S 12 0.151 + mean S 1-17 0.124 + D 1-17 0.122 0.450 NO +Name=TCONS_00004363 SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004368 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.254 + max. Y 22 0.384 + max. S 4 0.743 + mean S 1-21 0.621 + D 1-21 0.478 0.500 NO +Name=TCONS_00004368 SP='NO' D=0.478 D-cutoff=0.500 Networks=SignalP-TM +>TCONS_00004369 +# Measure Position Value Cutoff signal peptide? + max. C 49 0.112 + max. Y 11 0.112 + max. S 1 0.133 + mean S 1-10 0.109 + D 1-10 0.110 0.450 NO +Name=TCONS_00004369 SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004375 +# Measure Position Value Cutoff signal peptide? + max. C 62 0.113 + max. Y 35 0.108 + max. S 28 0.126 + mean S 1-34 0.105 + D 1-34 0.106 0.450 NO +Name=TCONS_00004375 SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004376 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.108 + max. Y 44 0.102 + max. S 25 0.112 + mean S 1-43 0.093 + D 1-43 0.098 0.450 NO +Name=TCONS_00004376 SP='NO' D=0.098 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004377 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.108 + max. Y 44 0.102 + max. S 25 0.112 + mean S 1-43 0.093 + D 1-43 0.098 0.450 NO +Name=TCONS_00004377 SP='NO' D=0.098 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004378 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.110 + max. Y 33 0.105 + max. S 11 0.119 + mean S 1-32 0.100 + D 1-32 0.102 0.450 NO +Name=TCONS_00004378 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004379 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.110 + max. Y 33 0.105 + max. S 11 0.119 + mean S 1-32 0.100 + D 1-32 0.102 0.450 NO +Name=TCONS_00004379 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004380 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.110 + max. Y 22 0.103 + max. S 11 0.108 + mean S 1-21 0.097 + D 1-21 0.100 0.450 NO +Name=TCONS_00004380 SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004381 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.108 + max. Y 44 0.102 + max. S 25 0.112 + mean S 1-43 0.093 + D 1-43 0.098 0.450 NO +Name=TCONS_00004381 SP='NO' D=0.098 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004382 +# Measure Position Value Cutoff signal peptide? + max. C 33 0.110 + max. Y 33 0.105 + max. S 11 0.119 + mean S 1-32 0.100 + D 1-32 0.102 0.450 NO +Name=TCONS_00004382 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004383 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.116 + max. Y 12 0.157 + max. S 4 0.254 + mean S 1-11 0.212 + D 1-11 0.187 0.450 NO +Name=TCONS_00004383 SP='NO' D=0.187 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004384 +# Measure Position Value Cutoff signal peptide? + max. C 17 0.116 + max. Y 12 0.157 + max. S 4 0.254 + mean S 1-11 0.212 + D 1-11 0.187 0.450 NO +Name=TCONS_00004384 SP='NO' D=0.187 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004390 +# Measure Position Value Cutoff signal peptide? + max. C 35 0.130 + max. Y 12 0.125 + max. S 41 0.169 + mean S 1-11 0.130 + D 1-11 0.127 0.450 NO +Name=TCONS_00004390 SP='NO' D=0.127 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004391 +# Measure Position Value Cutoff signal peptide? + max. C 47 0.108 + max. Y 47 0.106 + max. S 33 0.116 + mean S 1-46 0.100 + D 1-46 0.103 0.450 NO +Name=TCONS_00004391 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004398 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.141 + max. Y 26 0.129 + max. S 2 0.181 + mean S 1-25 0.123 + D 1-25 0.126 0.450 NO +Name=TCONS_00004398 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004399 +# Measure Position Value Cutoff signal peptide? + max. C 26 0.141 + max. Y 26 0.129 + max. S 2 0.181 + mean S 1-25 0.123 + D 1-25 0.126 0.450 NO +Name=TCONS_00004399 SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004410 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.170 + max. Y 24 0.260 + max. S 1 0.674 + mean S 1-23 0.408 + D 1-23 0.340 0.450 NO +Name=TCONS_00004410 SP='NO' D=0.340 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004412 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.170 + max. Y 24 0.260 + max. S 1 0.674 + mean S 1-23 0.408 + D 1-23 0.340 0.450 NO +Name=TCONS_00004412 SP='NO' D=0.340 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004413 +# Measure Position Value Cutoff signal peptide? + max. C 61 0.109 + max. Y 61 0.108 + max. S 41 0.138 + mean S 1-60 0.098 + D 1-60 0.102 0.450 NO +Name=TCONS_00004413 SP='NO' D=0.102 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004414 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.170 + max. Y 24 0.260 + max. S 1 0.674 + mean S 1-23 0.408 + D 1-23 0.340 0.450 NO +Name=TCONS_00004414 SP='NO' D=0.340 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004415 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.170 + max. Y 24 0.260 + max. S 1 0.674 + mean S 1-23 0.408 + D 1-23 0.340 0.450 NO +Name=TCONS_00004415 SP='NO' D=0.340 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004421 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.161 + max. Y 24 0.123 + max. S 1 0.119 + mean S 1-23 0.094 + D 1-23 0.107 0.450 NO +Name=TCONS_00004421 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004422 +# Measure Position Value Cutoff signal peptide? + max. C 24 0.161 + max. Y 24 0.123 + max. S 1 0.119 + mean S 1-23 0.094 + D 1-23 0.107 0.450 NO +Name=TCONS_00004422 SP='NO' D=0.107 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004428 +# Measure Position Value Cutoff signal peptide? + max. C 41 0.117 + max. Y 41 0.109 + max. S 40 0.147 + mean S 1-40 0.098 + D 1-40 0.103 0.450 NO +Name=TCONS_00004428 SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004429 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.127 + max. Y 16 0.290 + max. S 14 0.785 + mean S 1-15 0.705 + D 1-15 0.514 0.450 YES +Name=TCONS_00004429 SP='YES' Cleavage site between pos. 15 and 16: LAA-HA D=0.514 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004431 +# Measure Position Value Cutoff signal peptide? + max. C 20 0.127 + max. Y 16 0.290 + max. S 14 0.785 + mean S 1-15 0.705 + D 1-15 0.514 0.450 YES +Name=TCONS_00004431 SP='YES' Cleavage site between pos. 15 and 16: LAA-HA D=0.514 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004433 +# Measure Position Value Cutoff signal peptide? + max. C 21 0.176 + max. Y 21 0.296 + max. S 1 0.671 + mean S 1-20 0.479 + D 1-20 0.395 0.450 NO +Name=TCONS_00004433 SP='NO' D=0.395 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004434 +# Measure Position Value Cutoff signal peptide? + max. C 31 0.111 + max. Y 11 0.151 + max. S 2 0.264 + mean S 1-10 0.177 + D 1-10 0.165 0.450 NO +Name=TCONS_00004434 SP='NO' D=0.165 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004435 +# Measure Position Value Cutoff signal peptide? + max. C 51 0.109 + max. Y 67 0.103 + max. S 65 0.104 + mean S 1-66 0.094 + D 1-66 0.098 0.450 NO +Name=TCONS_00004435 SP='NO' D=0.098 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004436 +# Measure Position Value Cutoff signal peptide? + max. C 21 0.176 + max. Y 21 0.296 + max. S 1 0.671 + mean S 1-20 0.479 + D 1-20 0.395 0.450 NO +Name=TCONS_00004436 SP='NO' D=0.395 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004439 +# Measure Position Value Cutoff signal peptide? + max. C 67 0.199 + max. Y 67 0.142 + max. S 54 0.116 + mean S 1-66 0.096 + D 1-66 0.117 0.450 NO +Name=TCONS_00004439 SP='NO' D=0.117 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004440 +# Measure Position Value Cutoff signal peptide? + max. C 22 0.590 + max. Y 22 0.271 + max. S 18 0.161 + mean S 1-21 0.124 + D 1-21 0.192 0.450 NO +Name=TCONS_00004440 SP='NO' D=0.192 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004441 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.125 + max. Y 42 0.110 + max. S 8 0.133 + mean S 1-41 0.101 + D 1-41 0.105 0.450 NO +Name=TCONS_00004441 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004442 +# Measure Position Value Cutoff signal peptide? + max. C 42 0.125 + max. Y 42 0.110 + max. S 8 0.133 + mean S 1-41 0.101 + D 1-41 0.105 0.450 NO +Name=TCONS_00004442 SP='NO' D=0.105 D-cutoff=0.450 Networks=SignalP-noTM +>TCONS_00004443 +# Measure Position Value Cutoff signal peptide? + max. C 65 0.107 + max. Y 12 0.119 + max. S 1 0.138 + mean S 1-11 0.130 + D 1-11 0.125 0.450 NO +Name=TCONS_00004443 SP='NO' D=0.125 D-cutoff=0.450 Networks=SignalP-noTM \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test02_counts.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,355 @@ +gene_names cancer0 cancer1 health0 health1 +AADACL3 1.33294716142329 1.60935135697703 0 0 +AADACL4 0.16565689184278 0.245447543814652 0 0 +ACAP3 66.9545762637869 99.4728681831285 1393.95324090613 1183.58827790662 +ACOT7 455.514031889104 625.643253171647 7395.10823740127 2889.86502433136 +ACTL8 2.25786678564214 2.8385206089638 6.29646468356414 9.65386190076367 +AGMAT 14.1868697001226 20.8082199337387 56.2113078807145 41.8419006164206 +AGRN 223.424831149421 331.946548429751 2144.12485688125 3783.10646304681 +AGTRAP 187.400533886563 314.973593315019 1943.78534029914 2390.03265356525 +AJAP1 8.63047529957261 13.8464275492248 2.78718070452411 0 +AKR7A2 83.7117317539189 130.289924823431 3829.83857542184 3540.61290523654 +AKR7A3 1.86761600752251 3.58107135446447 19.1848890894377 15.2519579815619 +AKR7L 1.63323529019925 1.78518588259504 12.0382831872031 11.9429611381668 +ALDH4A1 80.0692491307954 115.615849240505 588.92974612004 641.316225550933 +ALPL 598.739713486774 931.026396105693 12.5179727486086 145.603586056744 +ANGPTL7 0.111187468282468 0.164742599508691 11.7533214949055 12.3890347339164 +APITD1 27.9435627190935 40.1067500091512 802.720467188703 663.18564778364 +ARHGEF10L 80.3813346280653 125.687632167421 575.337403596391 982.752730025466 +ARHGEF16 44.2754028984311 66.8497008399258 8.93761413278206 2.14380019716824 +ARHGEF19 115.733727841445 189.932215231752 192.61472131494 216.922297485954 +ASAP3 88.368604104536 144.185270660234 977.339687032257 832.468754427446 +ATAD3A 170.332210340393 256.909438164756 2909.59238880021 1787.85567999184 +ATAD3B 115.009269719842 186.922563175749 1204.49289913673 580.698972738788 +ATAD3C 9.18645892844685 11.1689876678097 20.3511517744843 14.9657017546822 +ATP13A2 173.079288123976 259.826155166127 778.918736405516 778.83424421371 +AURKAIP1 431.089374951588 734.107961651523 9367.79479097331 6368.53564372911 +B3GALT6 34.5537089926203 48.0941285791035 1107.4652590036 1344.53791709811 +C1orf126 0.748005384270891 2.19315673139357 0 2.02937495588995 +C1orf127 0.219649529265469 1.31728558966594 0.73417113252224 0 +C1orf128 157.021218105179 205.564314627884 2055.87258399552 1840.70695418312 +C1orf130 0.270304535188066 0.445000989755816 0 0.293709236838892 +C1orf144 169.905131358614 236.936379177537 6169.84439356059 6172.79967616817 +C1orf151 81.934540083501 106.83864564802 2316.80019551674 1742.26068228731 +C1orf158 0.306319741118665 0 0 0 +C1orf159 25.4472609092091 27.0936925692478 255.003897423656 260.387760636754 +C1orf167 0.852445327466635 1.62734609336196 4.28017084616318 20.8037404760945 +C1orf170 1.12825925747856 4.0128035997215 42.2830759803238 44.6208842491559 +C1orf174 65.3123327213875 103.529715471474 1150.25066664382 1553.57631620601 +C1orf187 38.4882619397459 66.6560127067159 22.7498270005338 2.90670998197146 +C1orf200 0.140010077377323 0 0 0 +C1orf201 16.9572193953188 29.7070533850009 301.219367711266 379.623514344136 +C1orf211 14.6209036697657 26.998386277083 1.41183164282385 8.65855898698444 +C1orf213 0.518508587606857 1.88619698952573 76.5600381962453 156.763728464001 +C1orf222 0.381237303744296 0.529475492302115 0 0 +C1orf70 7.51184976845881 19.8485556995299 239.879629899723 290.034472160915 +C1orf86 225.001393970245 375.819392770559 3491.25500640192 2865.04772849532 +C1orf89 5.10917443855593 12.0376749429161 202.484599015937 212.283237977287 +C1orf93 100.534745697611 160.074553609957 1576.8889615254 1358.37868843451 +CAD 1.78359239559776 5.00082342629287 0 13.4392425305562 +CALML6 2.92860771428337 5.65982936080012 0 2.10905502038753 +CAMK2N1 14.2906082102419 26.1322888570167 8126.76185609601 16305.1258047596 +CAMTA1 200.588720737929 253.543060947236 3055.15380157953 4100.09091814611 +CAPZB 619.112320909139 991.572432852428 20316.4731362545 24041.0162369706 +CASP9 51.1870965570691 80.3510692413285 340.999216471908 304.57891159937 +CASZ1 13.6330268070182 19.042062635585 8.81866733613576 9.75816312925625 +CCDC27 0.0573867205178809 1.02033468450467 0.75773394235314 0 +CCNL2 154.506479643163 214.761548556505 1152.06879708577 1771.98482377448 +CDA 13.5485774691298 33.1982874601624 176.302023749904 350.510461917004 +CDC2L1 290.944540530384 454.207969292801 3112.41609597224 1859.4524654607 +CDC2L2 170.977132360159 246.928776496558 2067.4280282674 2282.26157605437 +CDC42 203.801007690173 285.200666437615 11564.694795414 10973.3271896535 +CELA2B 0.159866211673547 0.236811104138174 0 0 +CHD5 3.05969618009437 5.29226916471859 5.15789578430315 4.14182197419077 +CLCN6 47.6704636085561 60.4197458667943 574.076737032054 768.141520213874 +CLCNKA 2.63522828591018 8.68236787500691 0.678927560712282 0 +CLCNKB 5.15929663864343 12.8715185272746 2.32675789513133 1.78445080716628 +CLSTN1 202.476075380806 319.632083851152 5093.23897792429 6042.3182160338 +CORT 2.88722197591461 5.85418514894763 8.23077012212674 22.4610665654388 +CPSF3L 295.347158226512 486.168636281702 3790.65155484617 3288.19390910512 +CROCC 78.3541158913447 107.947902278446 165.209683502876 225.026477190003 +CTNNBIP1 77.4633730300185 121.027354039037 541.243734816617 627.657026575342 +CTRC 0 0 2.62147985845083 10.0482914559178 +Cort 1.39537707894365 1.30434109573608 5.2816642560574 0.0151412578013478 +DDI2 32.8160456278053 49.5573033486735 254.874844668067 460.575319357691 +DDOST 604.449663575025 907.98657543851 13665.5007422144 15397.9137626485 +DFFA 130.006170003179 214.639755373536 1325.04655393129 1333.60627430197 +DFFB 13.2342440141516 16.2498596905303 127.460095995143 151.574760997069 +DHRS3 87.0464324268709 116.72890181231 1019.4715318943 889.744275630948 +DNAJC11 170.344114526107 239.921012121094 2130.43084610145 1817.86818341584 +DNAJC16 19.7622965555186 25.9568339296646 344.527403240069 532.271145389955 +DVL1 134.516467764835 206.683713511138 2152.3813715147 1328.47243311826 +DVL1L1 3.31326839123532 6.78391259724545 59.8262158993051 60.6810257420504 +E2F2 10.4399946081232 18.7092348544285 97.2088092893749 35.6406449776233 +ECE1 66.4571391530656 104.799250566661 6832.6483396322 8161.51962989564 +EFHD2 53.7957629609978 89.4533777139045 2778.28294353325 2216.78314141543 +EIF4G3 88.0324265767771 124.576532306832 2013.10224443396 2895.59135213179 +ENO1 6558.87666660173 9380.2303936004 93534.3399845077 69650.8820586366 +EPHA2 77.3221844026497 91.3520663119398 1390.10455203221 695.561720381493 +EPHA8 7.41680618002836 20.4553678887687 0 0 +EPHB2 32.3112950981041 60.4351378257855 1707.12636087386 423.970018570528 +ERRFI1 61.8103776457282 74.6154646346554 2062.3064004349 3271.74502949025 +ESPN 19.6610267100338 39.4634680663325 0.451453505296478 0 +ESPNP 0.129073180931436 1.10615167601148 0 0 +EXOSC10 173.284597941512 227.633522955699 1944.55712530741 1802.75580392237 +FAM131C 2.24876951909219 6.27872574545493 58.9032768191879 46.1727202863332 +FAM132A 3.84947896587315 9.98135157830029 128.448491513426 40.4669321823919 +FAM41C 0.302278489637574 0.335905814000472 4.95347952144023 12.1516309778703 +FAM43B 5.46152884081911 6.47372226696996 2.51816321877196 0.965224952857359 +FBLIM1 111.14573835528 181.165870005859 1673.86297734934 4009.68470407822 +FBXO2 154.152795959943 320.494643776912 53.5029060412522 114.375666849763 +FBXO42 32.5697215584544 48.16155042074 573.623814141438 758.468180724696 +FBXO44 66.872920433567 104.857828313577 440.70354833884 534.287933783485 +FBXO6 3.50735527954742 4.06973374654982 375.388875588851 452.825103479876 +FHAD1 0.921397741797418 1.65506633667102 3.92992882180617 4.53163220334661 +FUCA1 17.0659023558552 22.5859660704193 173.703225947981 150.186453191324 +GABRD 4.99857114177978 7.69856396630753 0.865565912204043 0 +GALE 66.7029801712116 108.438476102006 1069.52511368286 649.188753095255 +GLTPD1 23.9392818646217 32.0156695513129 930.45330751506 848.58426405939 +GNB1 552.837447538731 914.810470156843 17713.2729458483 20611.8841648059 +GPR153 29.2904210431041 54.7774980860172 1159.24045408154 570.753283504249 +GPR157 6.9246933142833 13.2614200369664 130.905914635676 92.9695489365082 +GRHL3 3.17376836133494 4.12271726299763 0.648123796243081 0.993719066619065 +H6PD 9.73184391540445 18.8086651865309 1098.37928461226 1470.23075215424 +HES2 0.860500532694876 1.72024884210958 2.59604614402101 1.53614188010627 +HES3 187.003719783718 265.680001103292 0 0 +HES4 3.26807877298495 9.21672514534727 11.5504692743939 65.2732181635511 +HES5 0.413503700004359 0.45950633170621 0 0 +HMGCL 39.2773527873122 73.3597815846527 1688.82684523087 2363.0312070757 +HNRNPR 358.051830999552 557.471771442898 6385.71855992608 5229.07227596313 +HP1BP3 139.453393502231 177.816028016673 4186.94412612279 6078.47421848083 +HSPB7 0.394310461505414 2.0187516214347 948.162427438671 726.090182906317 +HSPG2 121.689737329714 194.674360059929 2789.41615140344 9015.0255999021 +HTR1D 13.8118225729494 29.5527048447396 0 0 +HTR6 2.35343259159145 4.61791075618961 0 0 +ICMT 166.884696441074 229.758550167118 2794.81710553285 3198.04879103838 +ID3 449.723045510507 491.937275449614 1856.58321013501 1565.24977053587 +IFFO2 11.1211442814015 15.5015656767494 254.481027389179 450.177925257366 +IGSF21 48.2382101870424 74.0827603487169 0 0 +IL22RA1 0.705781326914609 1.48216703986439 5.34585936395826 2.75585835305596 +IL28RA 26.6775412932847 37.2044611745628 0 0.262706833151213 +ISG15 119.116629191387 201.703582003596 3105.38902825296 4422.52033006602 +KCNAB2 14.472866871752 26.0071232987046 98.0568372347768 139.265892445833 +KIAA0090 75.0221900923905 106.982092747177 2619.54097689511 2814.94479083254 +KIAA0495 53.1784425108188 75.9934182768027 301.178753240637 296.492504087296 +KIAA0562 23.4536077035124 30.4155950084256 552.955561310365 757.122210924832 +KIAA1751 0.124854649064705 0.147995553518561 0 0 +KIAA2013 87.6070922762549 142.540272990766 2235.34892030079 1016.20334845621 +KIF17 15.2331384334259 40.1105728721002 62.825982814168 237.073941704818 +KIF1B 78.4463774846293 111.037884709977 958.82950446031 1462.83998698116 +KLHDC7A 29.4976583180273 34.0128833944181 0 1.70197917290678 +KLHL17 88.4149865150737 139.743229547414 402.664189240798 385.634425836106 +KLHL21 45.7081683780084 64.1115115382759 1140.79410997292 1285.06857702427 +LDLRAD2 3.59538453721335 6.68521812139144 76.1340375265393 338.51369086515 +LRRC38 0.997683514322432 1.47823110632106 0 0 +LRRC47 167.727959048214 235.517074003772 1609.60980616476 1612.38422270307 +LUZP1 54.5077436444742 74.5740215696991 793.059726494864 1259.65975718178 +LYPLA2 339.908534559412 474.507682586206 1769.12671671444 899.71679762656 +LZIC 24.5909618538249 35.5038220040877 1005.55759760837 1328.64742363139 +MAD2L2 797.802503952905 1305.4448801087 3002.54966649886 2339.60499136296 +MASP2 6.94294362970907 10.4836075684965 17.3641720890563 16.8953743526098 +MEGF6 24.9133362230742 41.5314394969293 107.890965396316 259.377741818583 +MFAP2 570.353630763356 951.524946192844 4072.22816859979 1290.37024329098 +MFN2 109.138239264186 175.569198648429 3384.37411958815 3187.33975186549 +MIB2 72.1921445934075 105.877740006373 548.104608562341 842.319837122101 +MIIP 152.156382122545 219.249266599866 749.357895700436 551.454150999317 +MMEL1 1.35218731641887 2.59812893600714 1.9457853553284 6.10731690978305 +MMP23B 7.44397573330445 13.7807209705557 42.2011921224724 16.2670454373069 +MORN1 12.1189773398316 22.5921149570219 117.104726780606 115.439591842647 +MRPL20 575.672594221529 786.216186065711 10475.7619523782 9030.95571681375 +MRTO4 115.820605846853 175.534021130212 2266.6396732955 1473.2148439687 +MST1 11.436606389674 26.2428762056621 18.1752386648597 15.1154146036243 +MSTP9 4.88016781424482 7.61152114597714 3.65209942678968 3.55005851843959 +MTHFR 24.4475063276812 29.9700789192959 582.652443982103 920.313167786806 +MTOR 124.73936895399 181.787722378907 941.518274269282 910.65217053747 +MUL1 43.3272006808776 62.561780331408 1786.27725008401 1654.45029118442 +MXRA8 17.1568275470348 30.24735314324 16870.3622806594 15899.5507870047 +MYOM3 0.310421878415021 0.976053727109405 0 0 +NADK 147.791664362847 198.074254201433 1436.260234407 1430.74198842295 +NBL1 20.0871324682544 36.2462919848782 15872.8448293203 8582.52849084122 +NBPF1 51.5703448730042 58.6048802693097 1706.92782325294 2229.62017496562 +NBPF3 7.68495419423518 9.85151423019643 363.760809561629 869.632664928996 +NECAP2 65.7636829492125 96.2138649556517 3701.02434454676 5026.27670642801 +NIPAL3 18.8632148299027 24.5281240302511 1308.81945494026 2494.67782270471 +NMNAT1 4.78702557232616 7.04611074195382 314.687302277864 420.645042396772 +NOC2L 234.728893985379 312.96361094634 3237.14842462 1785.16903474856 +NOL9 25.584267048995 30.1478510202841 399.044328237984 433.83104623246 +NPHP4 25.0160670907537 31.4174022684124 132.796837435761 130.998815020073 +NPPA 0.710192088474257 2.89406878186218 13.429851621239 27.4507568623061 +NPPB 0.705955005423599 1.74331524334027 0 0 +OTUD3 19.974820095962 26.6627640369539 85.6445817254726 116.089955401405 +PADI1 0.185516840463236 1.24182414771582 0 1.11316504418009 +PADI2 7.51899928234925 12.2918361015747 0 2.02472269658805 +PADI3 0.869450628853144 3.30460477762227 0 0.728834344112798 +PADI4 0.383826315779788 1.10110298423884 0 0 +PADI6 0 0.0707671159325972 0 0 +PANK4 41.8970367940307 68.1135465099719 638.532122052508 500.8015989744 +PARK7 1077.81774511544 1540.15324809546 24362.6961564898 24307.5268486402 +PAX7 0.21145536824581 0.0816882815741125 0 0 +PDPN 204.703088605948 309.476711243959 165.120606833283 85.5475350277717 +PER3 10.0624111654097 27.5498566921273 236.275948645371 607.667822838314 +PEX10 58.1307855336005 80.7060283478488 1151.06186639986 930.452221357871 +PEX14 73.4945032707565 107.881910331134 1371.46977439048 1094.01402382356 +PGD 890.161300907484 1280.00698110311 19121.666094945 12476.1466550127 +PHF13 77.8551548549547 121.472277853625 742.138646029597 1030.19031622626 +PIK3CD 50.9607746055481 82.4895572377791 183.485391801705 221.213373384644 +PINK1 50.0818469155858 85.5475963290434 2692.36077455866 4317.35515886264 +PLA2G2A 3.74974538819337 7.92256771625009 22.9259041929206 6.51597423568075 +PLA2G2F 0 0.122170264426813 0 0 +PLA2G5 0.201088163638666 0 277.115482877212 55.4248127286894 +PLCH2 0.193540142248261 0.544784065319548 5.22902173840885 0.616837768527375 +PLEKHG5 42.2674777253159 83.4115088410516 107.045403068473 55.8901444256815 +PLEKHM2 93.8608844360673 140.071313747926 2597.10278065526 2783.72448827927 +PLEKHN1 2.5736879406531 4.40844119860827 80.117711730481 53.72785611922 +PLOD1 109.603259722424 181.797773098397 7647.61830726864 16571.3813969054 +PNRC2 143.027070406672 152.609586312322 2011.01065422974 2090.32021814912 +PQLC2 38.0703573702872 61.4706383280928 714.709789866736 633.259418304438 +PRAMEF12 0 0.279456665890625 0 0 +PRAMEF17 0 0.106673490789535 0 0 +PRDM16 0.611027729076883 0.984067740086007 7.62453585986095 11.4951548439442 +PRDM2 18.6581906890874 28.2475997148451 394.131386140751 725.046460696322 +PRKCZ 117.712024291513 181.492407113477 53.2817718056418 161.944015592889 +PTCHD2 9.26750946108815 13.0498685446334 1.20260777463017 0 +PUSL1 94.6023146270327 149.809078960288 1102.09270198373 867.275989488539 +Pex14 13.4164623711511 17.5741837703391 583.441949667253 549.700888764663 +RAP1GAP 20.2795577553702 34.2314656737353 1.93869267311573 2.97246652674793 +RBP7 27.4187934555505 47.5241092022853 22.1452327263775 21.8273080337132 +RCAN3 17.5062860157843 22.073693461388 305.126521225719 626.138147907035 +RCC2 609.224891778857 1055.45297526727 1398.04583673645 985.098041731445 +RER1 95.2926149754708 147.338450580103 4103.2887729276 4944.55939763565 +RERE 124.283460004597 168.245837014558 1692.02943382284 3015.46946770012 +RNF186 0 0.132978736376042 0 0 +RNF207 8.17889719501219 15.6369991218838 54.0689440848903 102.812840504349 +RPL11 9264.50338715238 15259.6279877625 120354.990597382 151466.498386692 +RPL22 548.222657612127 767.825253908004 9672.8039620794 12962.5458958234 +RSC1A1 35.1225700307662 41.556494504802 304.983855853392 560.365515506551 +SAMD11 0.975266140467855 0.759252887568278 45.0300230436727 49.0319495170954 +SCNN1D 7.71336638783454 15.5462142033146 63.1275559900522 82.3917376076902 +SDF4 227.240662691068 321.830494596159 11192.2468917904 9591.92021655629 +SDHB 197.976221969527 275.147419909074 5863.32070994542 6298.70789527058 +SFRS13A 205.264479559859 266.370449636862 2681.6216041 2951.10917707711 +SH2D5 32.9533496689486 61.4520589305865 461.673162743305 234.472126490938 +SKI 92.3897739483106 127.413509412446 1927.52535349287 1842.60449966352 +SLC25A33 24.6601200693325 47.4403292762466 384.468466133855 215.085637104663 +SLC25A34 1.29825648901777 1.62759915612056 13.5765083834194 18.5813260646421 +SLC2A5 0.260483267812907 0.67541240881633 16.3041560887102 277.689332454979 +SLC2A7 0.0850275751047418 0 0 1.50881939106148 +SLC35E2 148.195682693737 196.923064964221 2067.76811117078 1857.68513708358 +SLC45A1 4.67322725382105 7.40698541480283 209.893713081992 276.198152896982 +SNORA59B 70.9971332886744 105.042223120801 0 7.63837259791362 +SPATA21 0 0 0 0.421441602389182 +SPEN 44.739917755163 69.6967143068591 370.216859396859 705.713648864823 +SPSB1 9.36693255552896 17.1492196077962 1069.35809905486 928.952594894819 +SRM 630.872113478932 863.35788109659 13885.6472427043 10515.013041803 +SRRM1 206.293153123351 341.575191544788 1880.1932053956 1866.94085134705 +SSU72 421.885125021761 622.441135221715 7183.53255691694 7971.41981761877 +TARDBP 338.973195508834 354.890905209488 3389.02992475779 2875.62970311353 +TAS1R1 0.104532874176939 0.301336364312904 2.07586161450828 11.4261958512478 +TAS1R3 0.383670837382131 0.355294728760446 3.17808783001526 6.82179031203873 +TCEA3 0.342791887378255 2.05463807432979 697.871844834797 1162.76725857631 +TCEB3 66.3457181111293 88.7236236880408 1421.63855158543 1400.03239874456 +THAP3 26.4479436136909 46.4358316540248 610.415901745808 659.114263612162 +TMCO4 7.28461701024201 13.4397549602983 686.596981615835 762.544823154734 +TMEM201 46.7212584959948 75.1142315893713 483.629851870259 264.737194782622 +TMEM51 27.3222662946233 43.5463020104048 615.525571093196 1028.81703236019 +TMEM52 34.5935874213324 56.6517060030079 23.2189296396117 29.6663247082648 +TMEM82 3.19694443891178 6.78513304175502 0 0 +TNFRSF14 0.233903600408319 1.19403444932786 757.172163875933 1281.49260022451 +TNFRSF18 4.12474694120627 6.74051502630256 22.6557540136091 11.4285119276378 +TNFRSF1B 3.51012702902294 7.00504996329246 1111.85800567783 2122.80867549515 +TNFRSF25 36.1105818392679 73.3724221591833 36.5881699419189 13.7686477624628 +TNFRSF4 0.075773999356543 0.36081311219213 6.79357920008104 6.51002491319665 +TNFRSF8 49.9796942851226 84.6089111769997 17.6154690266992 1.17529172475299 +TNFRSF9 0 0.0882052937257451 1.77370767678915 1.35973512662098 +TP73 8.46926746361882 14.4749941618466 9.64068706122226 1.35103553637155 +TPRG1L 58.8362301900852 92.7512700467242 3064.62673856174 3092.21092371814 +TTLL10 1.73177686366537 3.49901213493462 0 0 +UBE2J2 92.7379743475829 120.035383920751 2709.58020944209 1804.1917777818 +UBE4B 143.430326774727 197.625746659229 1536.28340626825 1782.38757239439 +UBIAD1 38.0149429703894 53.8574982983691 437.664397219596 318.157130986608 +UBR4 303.552035743086 376.94301475077 2252.79227409763 2605.89428690059 +UBXN10 1.79331869688632 3.80448449056755 1.0834421848588 0 +USP48 103.071349941227 139.574695134501 1549.29896497382 1952.07166035945 +UTS2 0 0.258346565417903 0 0 +VAMP3 57.7621237024533 96.0518545365503 6927.79406589322 9354.18929334716 +VPS13D 20.9475855266294 26.9671254093864 348.297196578629 471.117674983028 +VWA1 63.5031219959163 96.7039488066364 383.721886311972 706.734015743318 +VWA5B1 2.22741438314528 3.57990475309504 0 1.31365883581771 +WDR8 77.6406065347677 100.805988437263 661.677527392987 517.991532067406 +WNT4 7.61041931023364 15.2001517783147 0 1.79395742579473 +XLOC_000001 0 0.111620060073064 12.3070651310389 24.7883212671309 +XLOC_000004 163547.84518143 150008.962644156 31341.9338316771 0 +XLOC_000005 81.6040495959105 129.579530457555 63.7204722280739 45.7340910165949 +XLOC_000008 10486.3888872409 17994.197953533 52511.5387324361 107256.201346603 +XLOC_000009 807.284193808201 1261.03685290273 3024.76545173384 55503.7467702334 +XLOC_000011 3765.29512811875 6046.71027033079 18029.8531686299 67873.1683200467 +XLOC_000012 24.6631346886458 31.479230346221 333.581836425517 327.453659925217 +XLOC_000013 3.27907501233071 5.33084777462007 65.2509443529865 106.528467987978 +XLOC_000014 2.81993899604295 5.76710284364781 0.528120197752992 0.80972368775293 +XLOC_000020 3.78219361228549 6.37245767856051 127.598339288124 28.6749805291911 +XLOC_000021 0.241006945522658 0.238060264989136 0 0 +XLOC_000031 66.3390004948641 102.79660522321 554.345368683344 744.921366497279 +XLOC_000032 6.63384782773452 14.1293911983091 0 0 +XLOC_000037 0.812922956153769 2.81045038524391 0 11.0785611874907 +XLOC_000040 8.10149269013884 22.8466494281188 75.3048419278165 137.119740832445 +XLOC_000041 10.6716692892124 12.5415749436575 50.4399805977379 144.564809256974 +XLOC_000042 0.320111031048259 0.711445563448921 20.3091064417467 4.67074141893955 +XLOC_000046 13.0167464005023 20.4435223979407 95.0999386735299 135.299685478186 +XLOC_000058 7.94858977433594 18.9457857167227 57.347962726739 72.2257309492687 +XLOC_000060 3.70976322927918 3.59047057195943 4.47183702697288 5.00770314140861 +XLOC_000064 1.80705064391604 3.84646419215375 0.340359169837346 0 +XLOC_000099 26.9427447128 34.947787485532 11.9362517122089 2.28760719149588 +XLOC_000129 18.772462633958 29.3468930311443 353.587071781866 758.240294777622 +XLOC_000138 38.8700741575041 51.7940496915431 202.53853151081 344.095867778729 +XLOC_000148 1.57031994775796 2.0703046333356 2.54033057482786 0.518381268897529 +XLOC_000158 1.63670091555161 4.29047267335988 0 0 +XLOC_000173 1.06214651959231 1.12407426258865 0.669622554351972 7.18675196052498 +XLOC_000174 529.705405954172 9418.1343848515 3679.99023128108 22568.9992411476 +XLOC_000179 53.0677442654029 80.9418864284067 485.640103066908 724.628699874925 +XLOC_000187 1.0725849356793 1.29123388065767 26.360772631746 15.4131952005694 +XLOC_000188 485.665022302667 730.200923926726 2500.18608736872 2893.71714995025 +XLOC_000190 0.114539036581279 0.169708372845532 0 0 +XLOC_001217 130.676612377691 209.33874703643 2027.34232722767 1140.52321249461 +XLOC_001218 1.11065103222938 4.57113901513204 9.52791266360871 0 +XLOC_001219 0.28644580395248 0.462998956729158 11.3705108476242 19.898838698614 +XLOC_001220 76.2580000478759 118.977904648644 17.6627820045462 27.9729729298378 +XLOC_001222 126.034325977775 193.513860913044 87.3738347178654 163.72394213182 +XLOC_001223 163547.84518143 150008.962644156 31341.9338316771 0 +XLOC_001225 163547.84518143 150008.962644156 31341.9338316771 0 +XLOC_001227 28.4239434935344 44.1599898071085 42.4480653881083 73.0480407662068 +XLOC_001228 2.96779776535697 2.72934466849826 37.1746781190191 53.9434758606289 +XLOC_001230 1.04098840207296 0 9.44420723023971 7.24002040593887 +XLOC_001235 0.643193954521966 1.20378544200498 0 0 +XLOC_001241 4.11476546544828 7.20519927331771 27.1926538485809 19.1088966517602 +XLOC_001249 9.59909351607688 12.2964666116257 170.271058414378 55.3105894310116 +XLOC_001255 43.8864481692447 57.2375911584504 656.756902666893 1708.04361756199 +XLOC_001261 0.90538512843992 1.62893626076707 0 0 +XLOC_001262 2.57484095100331 8.57724811776433 32.879450200818 28.7871005595427 +XLOC_001265 102.124501928649 178.840887319719 260.853867089462 140.036931233652 +XLOC_001269 0.11275216952578 0.222119105968671 10.1892351170661 27.5651269941468 +XLOC_001271 0 0 0.739963735624112 0 +XLOC_001272 0 0 3.40547383237821 18.2746745328208 +XLOC_001279 0 0.196093126802293 0 0 +XLOC_001300 29.1309548025757 32.8750060677505 61.2454109786738 99.1536701126289 +XLOC_001302 26.859308595584 46.1638520055266 48.8092380588883 91.298890695025 +XLOC_001321 304.286653369147 352.220285459156 2808.34205445117 1561.66669448542 +XLOC_001325 38.3463137232589 44.5659670836712 223.97284590171 244.287622687443 +XLOC_001335 0.500183500127258 0.594266737589076 5.3417274447352 0.450899882954414 +XLOC_001338 1730.03542846583 3865.41697747869 28354.734013617 17953.5236839171 +XLOC_001339 7.23103916627791 10.251015971773 43.8346808379212 47.6814554489967 +XLOC_001349 23.8440839846515 29.2782663595089 51.1774249153872 102.986302873693 +XLOC_001350 1.4752288850076 2.1408032514761 0.816249598627034 1.00664968225117 +XLOC_001351 21.2015565220575 33.3290832161605 1407.51704323402 2617.27714122475 +XLOC_001353 83.4951990071602 149.319321757687 624.002928066391 695.456434884007 +XLOC_001356 50.2094341503045 115.190039740662 230.807964129475 606.651426727153 +XLOC_001372 1.91582617937623 2.83861034753068 14.2153949190097 24.2174693160748 +XLOC_001379 0.0910349755442975 0.134883347719491 0 5.64750205253292 +XLOC_001388 0.0532721212125523 0.236667522431167 0.70418227693387 0.539833038602494 +XLOC_001389 6.75542956098647 11.622221273691 475.397331693707 735.365654745429 +XLOC_001394 0 0.325668438290865 0 0 +XLOC_001401 0.184850759376464 0.27372057669569 0 0 +XLOC_001404 6.91245087404029 18.7625395631549 84.3316006411086 171.862029782374 +ZBTB17 39.465672732615 62.8537160424089 792.615674949323 724.307200079801 +ZBTB40 36.5722648528181 24.6063437546859 225.002031996727 308.369466259324 +ZBTB48 38.6672531811893 60.54808278606 285.548786027533 290.958457686854 +ZNF436 1.88956101189413 3.81408651722365 381.877284921004 509.309870434116
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test02_samples_annotation.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,5 @@ +sampleID condition +cancer0 cancer +cancer1 cancer +health0 health +health1 health
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test03_cancer_counts.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,355 @@ +Geneid cancer0 +AADACL3 1.33294716142329 +AADACL4 0.16565689184278 +ACAP3 66.9545762637869 +ACOT7 455.514031889104 +ACTL8 2.25786678564214 +AGMAT 14.1868697001226 +AGRN 223.424831149421 +AGTRAP 187.400533886563 +AJAP1 8.63047529957261 +AKR7A2 83.7117317539189 +AKR7A3 1.86761600752251 +AKR7L 1.63323529019925 +ALDH4A1 80.0692491307954 +ALPL 598.739713486774 +ANGPTL7 0.111187468282468 +APITD1 27.9435627190935 +ARHGEF10L 80.3813346280653 +ARHGEF16 44.2754028984311 +ARHGEF19 115.733727841445 +ASAP3 88.368604104536 +ATAD3A 170.332210340393 +ATAD3B 115.009269719842 +ATAD3C 9.18645892844685 +ATP13A2 173.079288123976 +AURKAIP1 431.089374951588 +B3GALT6 34.5537089926203 +C1orf126 0.748005384270891 +C1orf127 0.219649529265469 +C1orf128 157.021218105179 +C1orf130 0.270304535188066 +C1orf144 169.905131358614 +C1orf151 81.934540083501 +C1orf158 0.306319741118665 +C1orf159 25.4472609092091 +C1orf167 0.852445327466635 +C1orf170 1.12825925747856 +C1orf174 65.3123327213875 +C1orf187 38.4882619397459 +C1orf200 0.140010077377323 +C1orf201 16.9572193953188 +C1orf211 14.6209036697657 +C1orf213 0.518508587606857 +C1orf222 0.381237303744296 +C1orf70 7.51184976845881 +C1orf86 225.001393970245 +C1orf89 5.10917443855593 +C1orf93 100.534745697611 +CAD 1.78359239559776 +CALML6 2.92860771428337 +CAMK2N1 14.2906082102419 +CAMTA1 200.588720737929 +CAPZB 619.112320909139 +CASP9 51.1870965570691 +CASZ1 13.6330268070182 +CCDC27 0.0573867205178809 +CCNL2 154.506479643163 +CDA 13.5485774691298 +CDC2L1 290.944540530384 +CDC2L2 170.977132360159 +CDC42 203.801007690173 +CELA2B 0.159866211673547 +CHD5 3.05969618009437 +CLCN6 47.6704636085561 +CLCNKA 2.63522828591018 +CLCNKB 5.15929663864343 +CLSTN1 202.476075380806 +CORT 2.88722197591461 +CPSF3L 295.347158226512 +CROCC 78.3541158913447 +CTNNBIP1 77.4633730300185 +CTRC 0 +Cort 1.39537707894365 +DDI2 32.8160456278053 +DDOST 604.449663575025 +DFFA 130.006170003179 +DFFB 13.2342440141516 +DHRS3 87.0464324268709 +DNAJC11 170.344114526107 +DNAJC16 19.7622965555186 +DVL1 134.516467764835 +DVL1L1 3.31326839123532 +E2F2 10.4399946081232 +ECE1 66.4571391530656 +EFHD2 53.7957629609978 +EIF4G3 88.0324265767771 +ENO1 6558.87666660173 +EPHA2 77.3221844026497 +EPHA8 7.41680618002836 +EPHB2 32.3112950981041 +ERRFI1 61.8103776457282 +ESPN 19.6610267100338 +ESPNP 0.129073180931436 +EXOSC10 173.284597941512 +FAM131C 2.24876951909219 +FAM132A 3.84947896587315 +FAM41C 0.302278489637574 +FAM43B 5.46152884081911 +FBLIM1 111.14573835528 +FBXO2 154.152795959943 +FBXO42 32.5697215584544 +FBXO44 66.872920433567 +FBXO6 3.50735527954742 +FHAD1 0.921397741797418 +FUCA1 17.0659023558552 +GABRD 4.99857114177978 +GALE 66.7029801712116 +GLTPD1 23.9392818646217 +GNB1 552.837447538731 +GPR153 29.2904210431041 +GPR157 6.9246933142833 +GRHL3 3.17376836133494 +H6PD 9.73184391540445 +HES2 0.860500532694876 +HES3 187.003719783718 +HES4 3.26807877298495 +HES5 0.413503700004359 +HMGCL 39.2773527873122 +HNRNPR 358.051830999552 +HP1BP3 139.453393502231 +HSPB7 0.394310461505414 +HSPG2 121.689737329714 +HTR1D 13.8118225729494 +HTR6 2.35343259159145 +ICMT 166.884696441074 +ID3 449.723045510507 +IFFO2 11.1211442814015 +IGSF21 48.2382101870424 +IL22RA1 0.705781326914609 +IL28RA 26.6775412932847 +ISG15 119.116629191387 +KCNAB2 14.472866871752 +KIAA0090 75.0221900923905 +KIAA0495 53.1784425108188 +KIAA0562 23.4536077035124 +KIAA1751 0.124854649064705 +KIAA2013 87.6070922762549 +KIF17 15.2331384334259 +KIF1B 78.4463774846293 +KLHDC7A 29.4976583180273 +KLHL17 88.4149865150737 +KLHL21 45.7081683780084 +LDLRAD2 3.59538453721335 +LRRC38 0.997683514322432 +LRRC47 167.727959048214 +LUZP1 54.5077436444742 +LYPLA2 339.908534559412 +LZIC 24.5909618538249 +MAD2L2 797.802503952905 +MASP2 6.94294362970907 +MEGF6 24.9133362230742 +MFAP2 570.353630763356 +MFN2 109.138239264186 +MIB2 72.1921445934075 +MIIP 152.156382122545 +MMEL1 1.35218731641887 +MMP23B 7.44397573330445 +MORN1 12.1189773398316 +MRPL20 575.672594221529 +MRTO4 115.820605846853 +MST1 11.436606389674 +MSTP9 4.88016781424482 +MTHFR 24.4475063276812 +MTOR 124.73936895399 +MUL1 43.3272006808776 +MXRA8 17.1568275470348 +MYOM3 0.310421878415021 +NADK 147.791664362847 +NBL1 20.0871324682544 +NBPF1 51.5703448730042 +NBPF3 7.68495419423518 +NECAP2 65.7636829492125 +NIPAL3 18.8632148299027 +NMNAT1 4.78702557232616 +NOC2L 234.728893985379 +NOL9 25.584267048995 +NPHP4 25.0160670907537 +NPPA 0.710192088474257 +NPPB 0.705955005423599 +OTUD3 19.974820095962 +PADI1 0.185516840463236 +PADI2 7.51899928234925 +PADI3 0.869450628853144 +PADI4 0.383826315779788 +PADI6 0 +PANK4 41.8970367940307 +PARK7 1077.81774511544 +PAX7 0.21145536824581 +PDPN 204.703088605948 +PER3 10.0624111654097 +PEX10 58.1307855336005 +PEX14 73.4945032707565 +PGD 890.161300907484 +PHF13 77.8551548549547 +PIK3CD 50.9607746055481 +PINK1 50.0818469155858 +PLA2G2A 3.74974538819337 +PLA2G2F 0 +PLA2G5 0.201088163638666 +PLCH2 0.193540142248261 +PLEKHG5 42.2674777253159 +PLEKHM2 93.8608844360673 +PLEKHN1 2.5736879406531 +PLOD1 109.603259722424 +PNRC2 143.027070406672 +PQLC2 38.0703573702872 +PRAMEF12 0 +PRAMEF17 0 +PRDM16 0.611027729076883 +PRDM2 18.6581906890874 +PRKCZ 117.712024291513 +PTCHD2 9.26750946108815 +PUSL1 94.6023146270327 +Pex14 13.4164623711511 +RAP1GAP 20.2795577553702 +RBP7 27.4187934555505 +RCAN3 17.5062860157843 +RCC2 609.224891778857 +RER1 95.2926149754708 +RERE 124.283460004597 +RNF186 0 +RNF207 8.17889719501219 +RPL11 9264.50338715238 +RPL22 548.222657612127 +RSC1A1 35.1225700307662 +SAMD11 0.975266140467855 +SCNN1D 7.71336638783454 +SDF4 227.240662691068 +SDHB 197.976221969527 +SFRS13A 205.264479559859 +SH2D5 32.9533496689486 +SKI 92.3897739483106 +SLC25A33 24.6601200693325 +SLC25A34 1.29825648901777 +SLC2A5 0.260483267812907 +SLC2A7 0.0850275751047418 +SLC35E2 148.195682693737 +SLC45A1 4.67322725382105 +SNORA59B 70.9971332886744 +SPATA21 0 +SPEN 44.739917755163 +SPSB1 9.36693255552896 +SRM 630.872113478932 +SRRM1 206.293153123351 +SSU72 421.885125021761 +TARDBP 338.973195508834 +TAS1R1 0.104532874176939 +TAS1R3 0.383670837382131 +TCEA3 0.342791887378255 +TCEB3 66.3457181111293 +THAP3 26.4479436136909 +TMCO4 7.28461701024201 +TMEM201 46.7212584959948 +TMEM51 27.3222662946233 +TMEM52 34.5935874213324 +TMEM82 3.19694443891178 +TNFRSF14 0.233903600408319 +TNFRSF18 4.12474694120627 +TNFRSF1B 3.51012702902294 +TNFRSF25 36.1105818392679 +TNFRSF4 0.075773999356543 +TNFRSF8 49.9796942851226 +TNFRSF9 0 +TP73 8.46926746361882 +TPRG1L 58.8362301900852 +TTLL10 1.73177686366537 +UBE2J2 92.7379743475829 +UBE4B 143.430326774727 +UBIAD1 38.0149429703894 +UBR4 303.552035743086 +UBXN10 1.79331869688632 +USP48 103.071349941227 +UTS2 0 +VAMP3 57.7621237024533 +VPS13D 20.9475855266294 +VWA1 63.5031219959163 +VWA5B1 2.22741438314528 +WDR8 77.6406065347677 +WNT4 7.61041931023364 +XLOC_000001 0 +XLOC_000004 163547.84518143 +XLOC_000005 81.6040495959105 +XLOC_000008 10486.3888872409 +XLOC_000009 807.284193808201 +XLOC_000011 3765.29512811875 +XLOC_000012 24.6631346886458 +XLOC_000013 3.27907501233071 +XLOC_000014 2.81993899604295 +XLOC_000020 3.78219361228549 +XLOC_000021 0.241006945522658 +XLOC_000031 66.3390004948641 +XLOC_000032 6.63384782773452 +XLOC_000037 0.812922956153769 +XLOC_000040 8.10149269013884 +XLOC_000041 10.6716692892124 +XLOC_000042 0.320111031048259 +XLOC_000046 13.0167464005023 +XLOC_000058 7.94858977433594 +XLOC_000060 3.70976322927918 +XLOC_000064 1.80705064391604 +XLOC_000099 26.9427447128 +XLOC_000129 18.772462633958 +XLOC_000138 38.8700741575041 +XLOC_000148 1.57031994775796 +XLOC_000158 1.63670091555161 +XLOC_000173 1.06214651959231 +XLOC_000174 529.705405954172 +XLOC_000179 53.0677442654029 +XLOC_000187 1.0725849356793 +XLOC_000188 485.665022302667 +XLOC_000190 0.114539036581279 +XLOC_001217 130.676612377691 +XLOC_001218 1.11065103222938 +XLOC_001219 0.28644580395248 +XLOC_001220 76.2580000478759 +XLOC_001222 126.034325977775 +XLOC_001223 163547.84518143 +XLOC_001225 163547.84518143 +XLOC_001227 28.4239434935344 +XLOC_001228 2.96779776535697 +XLOC_001230 1.04098840207296 +XLOC_001235 0.643193954521966 +XLOC_001241 4.11476546544828 +XLOC_001249 9.59909351607688 +XLOC_001255 43.8864481692447 +XLOC_001261 0.90538512843992 +XLOC_001262 2.57484095100331 +XLOC_001265 102.124501928649 +XLOC_001269 0.11275216952578 +XLOC_001271 0 +XLOC_001272 0 +XLOC_001279 0 +XLOC_001300 29.1309548025757 +XLOC_001302 26.859308595584 +XLOC_001321 304.286653369147 +XLOC_001325 38.3463137232589 +XLOC_001335 0.500183500127258 +XLOC_001338 1730.03542846583 +XLOC_001339 7.23103916627791 +XLOC_001349 23.8440839846515 +XLOC_001350 1.4752288850076 +XLOC_001351 21.2015565220575 +XLOC_001353 83.4951990071602 +XLOC_001356 50.2094341503045 +XLOC_001372 1.91582617937623 +XLOC_001379 0.0910349755442975 +XLOC_001388 0.0532721212125523 +XLOC_001389 6.75542956098647 +XLOC_001394 0 +XLOC_001401 0.184850759376464 +XLOC_001404 6.91245087404029 +ZBTB17 39.465672732615 +ZBTB40 36.5722648528181 +ZBTB48 38.6672531811893 +ZNF436 1.88956101189413
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test03_health_counts.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,355 @@ +Geneid health0 +AADACL3 0 +AADACL4 0 +ACAP3 1393.95324090613 +ACOT7 7395.10823740127 +ACTL8 6.29646468356414 +AGMAT 56.2113078807145 +AGRN 2144.12485688125 +AGTRAP 1943.78534029914 +AJAP1 2.78718070452411 +AKR7A2 3829.83857542184 +AKR7A3 19.1848890894377 +AKR7L 12.0382831872031 +ALDH4A1 588.92974612004 +ALPL 12.5179727486086 +ANGPTL7 11.7533214949055 +APITD1 802.720467188703 +ARHGEF10L 575.337403596391 +ARHGEF16 8.93761413278206 +ARHGEF19 192.61472131494 +ASAP3 977.339687032257 +ATAD3A 2909.59238880021 +ATAD3B 1204.49289913673 +ATAD3C 20.3511517744843 +ATP13A2 778.918736405516 +AURKAIP1 9367.79479097331 +B3GALT6 1107.4652590036 +C1orf126 0 +C1orf127 0.73417113252224 +C1orf128 2055.87258399552 +C1orf130 0 +C1orf144 6169.84439356059 +C1orf151 2316.80019551674 +C1orf158 0 +C1orf159 255.003897423656 +C1orf167 4.28017084616318 +C1orf170 42.2830759803238 +C1orf174 1150.25066664382 +C1orf187 22.7498270005338 +C1orf200 0 +C1orf201 301.219367711266 +C1orf211 1.41183164282385 +C1orf213 76.5600381962453 +C1orf222 0 +C1orf70 239.879629899723 +C1orf86 3491.25500640192 +C1orf89 202.484599015937 +C1orf93 1576.8889615254 +CAD 0 +CALML6 0 +CAMK2N1 8126.76185609601 +CAMTA1 3055.15380157953 +CAPZB 20316.4731362545 +CASP9 340.999216471908 +CASZ1 8.81866733613576 +CCDC27 0.75773394235314 +CCNL2 1152.06879708577 +CDA 176.302023749904 +CDC2L1 3112.41609597224 +CDC2L2 2067.4280282674 +CDC42 11564.694795414 +CELA2B 0 +CHD5 5.15789578430315 +CLCN6 574.076737032054 +CLCNKA 0.678927560712282 +CLCNKB 2.32675789513133 +CLSTN1 5093.23897792429 +CORT 8.23077012212674 +CPSF3L 3790.65155484617 +CROCC 165.209683502876 +CTNNBIP1 541.243734816617 +CTRC 2.62147985845083 +Cort 5.2816642560574 +DDI2 254.874844668067 +DDOST 13665.5007422144 +DFFA 1325.04655393129 +DFFB 127.460095995143 +DHRS3 1019.4715318943 +DNAJC11 2130.43084610145 +DNAJC16 344.527403240069 +DVL1 2152.3813715147 +DVL1L1 59.8262158993051 +E2F2 97.2088092893749 +ECE1 6832.6483396322 +EFHD2 2778.28294353325 +EIF4G3 2013.10224443396 +ENO1 93534.3399845077 +EPHA2 1390.10455203221 +EPHA8 0 +EPHB2 1707.12636087386 +ERRFI1 2062.3064004349 +ESPN 0.451453505296478 +ESPNP 0 +EXOSC10 1944.55712530741 +FAM131C 58.9032768191879 +FAM132A 128.448491513426 +FAM41C 4.95347952144023 +FAM43B 2.51816321877196 +FBLIM1 1673.86297734934 +FBXO2 53.5029060412522 +FBXO42 573.623814141438 +FBXO44 440.70354833884 +FBXO6 375.388875588851 +FHAD1 3.92992882180617 +FUCA1 173.703225947981 +GABRD 0.865565912204043 +GALE 1069.52511368286 +GLTPD1 930.45330751506 +GNB1 17713.2729458483 +GPR153 1159.24045408154 +GPR157 130.905914635676 +GRHL3 0.648123796243081 +H6PD 1098.37928461226 +HES2 2.59604614402101 +HES3 0 +HES4 11.5504692743939 +HES5 0 +HMGCL 1688.82684523087 +HNRNPR 6385.71855992608 +HP1BP3 4186.94412612279 +HSPB7 948.162427438671 +HSPG2 2789.41615140344 +HTR1D 0 +HTR6 0 +ICMT 2794.81710553285 +ID3 1856.58321013501 +IFFO2 254.481027389179 +IGSF21 0 +IL22RA1 5.34585936395826 +IL28RA 0 +ISG15 3105.38902825296 +KCNAB2 98.0568372347768 +KIAA0090 2619.54097689511 +KIAA0495 301.178753240637 +KIAA0562 552.955561310365 +KIAA1751 0 +KIAA2013 2235.34892030079 +KIF17 62.825982814168 +KIF1B 958.82950446031 +KLHDC7A 0 +KLHL17 402.664189240798 +KLHL21 1140.79410997292 +LDLRAD2 76.1340375265393 +LRRC38 0 +LRRC47 1609.60980616476 +LUZP1 793.059726494864 +LYPLA2 1769.12671671444 +LZIC 1005.55759760837 +MAD2L2 3002.54966649886 +MASP2 17.3641720890563 +MEGF6 107.890965396316 +MFAP2 4072.22816859979 +MFN2 3384.37411958815 +MIB2 548.104608562341 +MIIP 749.357895700436 +MMEL1 1.9457853553284 +MMP23B 42.2011921224724 +MORN1 117.104726780606 +MRPL20 10475.7619523782 +MRTO4 2266.6396732955 +MST1 18.1752386648597 +MSTP9 3.65209942678968 +MTHFR 582.652443982103 +MTOR 941.518274269282 +MUL1 1786.27725008401 +MXRA8 16870.3622806594 +MYOM3 0 +NADK 1436.260234407 +NBL1 15872.8448293203 +NBPF1 1706.92782325294 +NBPF3 363.760809561629 +NECAP2 3701.02434454676 +NIPAL3 1308.81945494026 +NMNAT1 314.687302277864 +NOC2L 3237.14842462 +NOL9 399.044328237984 +NPHP4 132.796837435761 +NPPA 13.429851621239 +NPPB 0 +OTUD3 85.6445817254726 +PADI1 0 +PADI2 0 +PADI3 0 +PADI4 0 +PADI6 0 +PANK4 638.532122052508 +PARK7 24362.6961564898 +PAX7 0 +PDPN 165.120606833283 +PER3 236.275948645371 +PEX10 1151.06186639986 +PEX14 1371.46977439048 +PGD 19121.666094945 +PHF13 742.138646029597 +PIK3CD 183.485391801705 +PINK1 2692.36077455866 +PLA2G2A 22.9259041929206 +PLA2G2F 0 +PLA2G5 277.115482877212 +PLCH2 5.22902173840885 +PLEKHG5 107.045403068473 +PLEKHM2 2597.10278065526 +PLEKHN1 80.117711730481 +PLOD1 7647.61830726864 +PNRC2 2011.01065422974 +PQLC2 714.709789866736 +PRAMEF12 0 +PRAMEF17 0 +PRDM16 7.62453585986095 +PRDM2 394.131386140751 +PRKCZ 53.2817718056418 +PTCHD2 1.20260777463017 +PUSL1 1102.09270198373 +Pex14 583.441949667253 +RAP1GAP 1.93869267311573 +RBP7 22.1452327263775 +RCAN3 305.126521225719 +RCC2 1398.04583673645 +RER1 4103.2887729276 +RERE 1692.02943382284 +RNF186 0 +RNF207 54.0689440848903 +RPL11 120354.990597382 +RPL22 9672.8039620794 +RSC1A1 304.983855853392 +SAMD11 45.0300230436727 +SCNN1D 63.1275559900522 +SDF4 11192.2468917904 +SDHB 5863.32070994542 +SFRS13A 2681.6216041 +SH2D5 461.673162743305 +SKI 1927.52535349287 +SLC25A33 384.468466133855 +SLC25A34 13.5765083834194 +SLC2A5 16.3041560887102 +SLC2A7 0 +SLC35E2 2067.76811117078 +SLC45A1 209.893713081992 +SNORA59B 0 +SPATA21 0 +SPEN 370.216859396859 +SPSB1 1069.35809905486 +SRM 13885.6472427043 +SRRM1 1880.1932053956 +SSU72 7183.53255691694 +TARDBP 3389.02992475779 +TAS1R1 2.07586161450828 +TAS1R3 3.17808783001526 +TCEA3 697.871844834797 +TCEB3 1421.63855158543 +THAP3 610.415901745808 +TMCO4 686.596981615835 +TMEM201 483.629851870259 +TMEM51 615.525571093196 +TMEM52 23.2189296396117 +TMEM82 0 +TNFRSF14 757.172163875933 +TNFRSF18 22.6557540136091 +TNFRSF1B 1111.85800567783 +TNFRSF25 36.5881699419189 +TNFRSF4 6.79357920008104 +TNFRSF8 17.6154690266992 +TNFRSF9 1.77370767678915 +TP73 9.64068706122226 +TPRG1L 3064.62673856174 +TTLL10 0 +UBE2J2 2709.58020944209 +UBE4B 1536.28340626825 +UBIAD1 437.664397219596 +UBR4 2252.79227409763 +UBXN10 1.0834421848588 +USP48 1549.29896497382 +UTS2 0 +VAMP3 6927.79406589322 +VPS13D 348.297196578629 +VWA1 383.721886311972 +VWA5B1 0 +WDR8 661.677527392987 +WNT4 0 +XLOC_000001 12.3070651310389 +XLOC_000004 31341.9338316771 +XLOC_000005 63.7204722280739 +XLOC_000008 52511.5387324361 +XLOC_000009 3024.76545173384 +XLOC_000011 18029.8531686299 +XLOC_000012 333.581836425517 +XLOC_000013 65.2509443529865 +XLOC_000014 0.528120197752992 +XLOC_000020 127.598339288124 +XLOC_000021 0 +XLOC_000031 554.345368683344 +XLOC_000032 0 +XLOC_000037 0 +XLOC_000040 75.3048419278165 +XLOC_000041 50.4399805977379 +XLOC_000042 20.3091064417467 +XLOC_000046 95.0999386735299 +XLOC_000058 57.347962726739 +XLOC_000060 4.47183702697288 +XLOC_000064 0.340359169837346 +XLOC_000099 11.9362517122089 +XLOC_000129 353.587071781866 +XLOC_000138 202.53853151081 +XLOC_000148 2.54033057482786 +XLOC_000158 0 +XLOC_000173 0.669622554351972 +XLOC_000174 3679.99023128108 +XLOC_000179 485.640103066908 +XLOC_000187 26.360772631746 +XLOC_000188 2500.18608736872 +XLOC_000190 0 +XLOC_001217 2027.34232722767 +XLOC_001218 9.52791266360871 +XLOC_001219 11.3705108476242 +XLOC_001220 17.6627820045462 +XLOC_001222 87.3738347178654 +XLOC_001223 31341.9338316771 +XLOC_001225 31341.9338316771 +XLOC_001227 42.4480653881083 +XLOC_001228 37.1746781190191 +XLOC_001230 9.44420723023971 +XLOC_001235 0 +XLOC_001241 27.1926538485809 +XLOC_001249 170.271058414378 +XLOC_001255 656.756902666893 +XLOC_001261 0 +XLOC_001262 32.879450200818 +XLOC_001265 260.853867089462 +XLOC_001269 10.1892351170661 +XLOC_001271 0.739963735624112 +XLOC_001272 3.40547383237821 +XLOC_001279 0 +XLOC_001300 61.2454109786738 +XLOC_001302 48.8092380588883 +XLOC_001321 2808.34205445117 +XLOC_001325 223.97284590171 +XLOC_001335 5.3417274447352 +XLOC_001338 28354.734013617 +XLOC_001339 43.8346808379212 +XLOC_001349 51.1774249153872 +XLOC_001350 0.816249598627034 +XLOC_001351 1407.51704323402 +XLOC_001353 624.002928066391 +XLOC_001356 230.807964129475 +XLOC_001372 14.2153949190097 +XLOC_001379 0 +XLOC_001388 0.70418227693387 +XLOC_001389 475.397331693707 +XLOC_001394 0 +XLOC_001401 0 +XLOC_001404 84.3316006411086 +ZBTB17 792.615674949323 +ZBTB40 225.002031996727 +ZBTB48 285.548786027533 +ZNF436 381.877284921004
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test04_summary.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,2 @@ +Comparison nrIsoforms nrSwitches nrGenes +cancer vs health 91 70 54
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test06_consequences_enrichment.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,6 @@ +condition_1 condition_2 conseqPair feature propOfRelevantEvents propCiLo propCiHi propPval nUp nDown propQval Significant +cancer health NMD_status NMD insensitive (paired with NMD sensitive) 0.333333333333333 0.00840375865961264 0.905700675949754 1 1 2 1 FALSE +cancer health intron_retention Intron retention gain (paired with Intron retention loss) 0.25 0.0548606445279928 0.571858461878189 0.14599609375 3 9 0.72998046875 FALSE +cancer health isoform_length Length gain (paired with Length loss) 0.423076923076923 0.233521983127443 0.630819619076033 0.557197093963623 11 15 0.928661823272706 FALSE +cancer health tss Tss more downstream (paired with Tss more upstream) 0.575757575757576 0.392153016187885 0.745238177265304 0.486850241664797 19 14 0.928661823272706 FALSE +cancer health tts Tts more downstream (paired with Tts more upstream) 0.5 0.210944638239297 0.789055361760703 1 6 6 1 FALSE
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test06_consequences_summary.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,19 @@ +Comparison featureCompared switchConsequence nrGenesWithConsequences nrIsoWithConsequences +cancer vs health Intron +retention Intron retention gain 3 5 +cancer vs health Intron +retention Intron retention loss 9 11 +cancer vs health Isoform seq +similarity Length gain 11 17 +cancer vs health Isoform seq +similarity Length loss 15 26 +cancer vs health NMD +status NMD insensitive 1 3 +cancer vs health NMD +status NMD sensitive 2 2 +cancer vs health Tss Tss more downstream 19 30 +cancer vs health Tss Tss more upstream 14 29 +cancer vs health Tts Tts more downstream 6 13 +cancer vs health Tts Tts more upstream 6 8 +cancer vs health ORF +genomic Any consequence 0 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test06_splicing_enrichment.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,22 @@ +condition_1 condition_2 AStype nUp nDown propUp propUpCiLo propUpCiHi propUpPval propUpQval Significant Comparison +cancer health A3 gain (paired with A3 loss) 15 8 0.652173913043478 0.427343963036494 0.83623640162505 0.210039615631104 0.367569327354431 FALSE cancer +vs +health +cancer health A5 gain (paired with A5 loss) 9 6 0.6 0.322869766206282 0.836635676140487 0.60723876953125 0.60723876953125 FALSE cancer +vs +health +cancer health ATSS gain (paired with ATSS loss) 19 13 0.59375 0.406449246576476 0.763015899448257 0.377085587475449 0.495082259178162 FALSE cancer +vs +health +cancer health ATTS gain (paired with ATTS loss) 4 11 0.266666666666667 0.0778715462910436 0.551003241036971 0.11846923828125 0.340657552083334 FALSE cancer +vs +health +cancer health ES (paired with EI) 10 15 0.4 0.211254806465142 0.61334650374316 0.42435622215271 0.495082259178162 FALSE cancer +vs +health +cancer health IR gain (paired with IR loss) 3 9 0.25 0.0548606445279928 0.571858461878189 0.14599609375 0.340657552083334 FALSE cancer +vs +health +cancer health MES (paired with MEI) 2 8 0.2 0.0252107263268334 0.556095462307641 0.109375 0.340657552083334 FALSE cancer +vs +health
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test06_splicing_summary.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,17 @@ +Comparison AStype splicingResult nrGenesWithConsequences nrIsoWithConsequences +cancer vs health A3 A3 in isoform used less 16 19 +cancer vs health A3 A3 in isoform used more 23 30 +cancer vs health A5 A5 in isoform used less 11 13 +cancer vs health A5 A5 in isoform used more 14 16 +cancer vs health ATSS ATSS in isoform used less 20 26 +cancer vs health ATSS ATSS in isoform used more 26 34 +cancer vs health ATTS ATTS in isoform used less 14 14 +cancer vs health ATTS ATTS in isoform used more 6 6 +cancer vs health ES ES in isoform used less 28 32 +cancer vs health ES ES in isoform used more 21 25 +cancer vs health IR IR in isoform used less 10 10 +cancer vs health IR IR in isoform used more 3 4 +cancer vs health MEE MEE in isoform used less 0 0 +cancer vs health MEE MEE in isoform used more 0 0 +cancer vs health MES MES in isoform used less 9 10 +cancer vs health MES MES in isoform used more 3 5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test06_switching.tabular Tue Jan 24 18:37:14 2023 +0000 @@ -0,0 +1,55 @@ +gene_ref gene_id gene_name condition_1 condition_2 gene_switch_q_value switchConsequencesGene Rank +geneComp_00000066 CLSTN1 CLSTN1 cancer health 2.63840734749711e-51 FALSE 1 +geneComp_00000167 NADK NADK cancer health 5.98021460938895e-40 TRUE 2 +geneComp_00000210 PRKCZ PRKCZ cancer health 4.18324640310234e-37 TRUE 3 +geneComp_00000222 RPL11 RPL11 cancer health 2.39911661782576e-29 TRUE 4 +geneComp_00000227 SDF4 SDF4 cancer health 2.62564234344567e-28 TRUE 5 +geneComp_00000243 SRRM1 SRRM1 cancer health 7.11497254534458e-22 TRUE 6 +geneComp_00000017 ARHGEF10L ARHGEF10L cancer health 7.07643322536192e-20 TRUE 7 +geneComp_00000080 DVL1 DVL1 cancer health 2.7041623161036e-19 TRUE 8 +geneComp_00000138 KIF1B KIF1B cancer health 8.83353225639552e-16 TRUE 9 +geneComp_00000058 CDC2L1 CDC2L1 cancer health 5.02785283461027e-13 NA 10 +geneComp_00000019 ARHGEF19 ARHGEF19 cancer health 3.43190474162283e-12 TRUE 11 +geneComp_00000254 TMEM52 TMEM52 cancer health 9.43836095793092e-12 TRUE 12 +geneComp_00000101 FBXO44 FBXO44 cancer health 1.25146337218935e-11 TRUE 13 +geneComp_00000189 PER3 PER3 cancer health 2.618343550887e-11 TRUE 14 +geneComp_00000219 RERE RERE cancer health 9.86048379542823e-11 TRUE 15 +geneComp_00000003 ACAP3 ACAP3 cancer health 3.66320856918666e-08 TRUE 16 +geneComp_00000281 XLOC_000005 NA cancer health 6.83756168564135e-08 TRUE 17 +geneComp_00000301 XLOC_000129 NA cancer health 1.89169990108601e-07 TRUE 18 +geneComp_00000085 EIF4G3 EIF4G3 cancer health 9.53210349628728e-07 TRUE 19 +geneComp_00000277 WDR8 WDR8 cancer health 2.4050379356366e-06 TRUE 20 +geneComp_00000200 PLEKHG5 PLEKHG5 cancer health 2.65200395744161e-06 TRUE 21 +geneComp_00000165 MXRA8 MXRA8 cancer health 4.09018221463055e-06 TRUE 22 +geneComp_00000194 PIK3CD PIK3CD cancer health 4.26262542329329e-06 TRUE 23 +geneComp_00000118 HNRNPR HNRNPR cancer health 4.43094440336388e-06 NA 24 +geneComp_00000323 XLOC_001249 NA cancer health 5.97869364244676e-06 TRUE 25 +geneComp_00000342 XLOC_001353 NA cancer health 1.47897331984417e-05 TRUE 26 +geneComp_00000153 MIB2 MIB2 cancer health 1.85010676533132e-05 TRUE 27 +geneComp_00000004 ACOT7 ACOT7 cancer health 2.22089528793497e-05 TRUE 28 +geneComp_00000119 HP1BP3 HP1BP3 cancer health 3.95360727622295e-05 TRUE 29 +geneComp_00000352 ZBTB40 ZBTB40 cancer health 7.08120622533635e-05 FALSE 30 +geneComp_00000069 CROCC CROCC cancer health 0.00035468174423336 NA 31 +geneComp_00000142 LDLRAD2 LDLRAD2 cancer health 0.000443465792700213 TRUE 32 +geneComp_00000053 CASP9 CASP9 cancer health 0.0004985861544369 TRUE 33 +geneComp_00000077 DHRS3 DHRS3 cancer health 0.00050532341155672 TRUE 34 +geneComp_00000261 TNFRSF8 TNFRSF8 cancer health 0.00069495698171926 TRUE 35 +geneComp_00000267 UBE4B UBE4B cancer health 0.00069495698171926 TRUE 36 +geneComp_00000285 XLOC_000012 NA cancer health 0.00069495698171926 TRUE 37 +geneComp_00000083 ECE1 ECE1 cancer health 0.000730501167981291 TRUE 38 +geneComp_00000172 NIPAL3 NIPAL3 cancer health 0.000884959331769316 TRUE 39 +geneComp_00000252 TMEM201 TMEM201 cancer health 0.00130127619274632 TRUE 40 +geneComp_00000106 GALE GALE cancer health 0.00190711749673494 TRUE 41 +geneComp_00000056 CCNL2 CCNL2 cancer health 0.00213211505312704 TRUE 42 +geneComp_00000156 MMP23B MMP23B cancer health 0.00220763192701029 TRUE 43 +geneComp_00000223 RPL22 RPL22 cancer health 0.00414604315547501 TRUE 44 +geneComp_00000140 KLHL17 KLHL17 cancer health 0.0043156399415831 NA 45 +geneComp_00000131 KCNAB2 KCNAB2 cancer health 0.00450582195570915 TRUE 46 +geneComp_00000169 NBPF1 NBPF1 cancer health 0.00603768129678154 NA 47 +geneComp_00000132 KIAA0090 KIAA0090 cancer health 0.00637311306884828 NA 48 +geneComp_00000216 RCAN3 RCAN3 cancer health 0.00655117020038015 TRUE 49 +geneComp_00000160 MST1 MST1 cancer health 0.00970833700285509 TRUE 50 +geneComp_00000137 KIF17 KIF17 cancer health 0.020741914385789 TRUE 51 +geneComp_00000229 SFRS13A SFRS13A cancer health 0.035326111600384 TRUE 52 +geneComp_00000257 TNFRSF18 TNFRSF18 cancer health 0.0453089266879188 TRUE 53 +geneComp_00000256 TNFRSF14 TNFRSF14 cancer health 0.0490680824638558 TRUE 54