Mercurial > repos > iuc > package_tophat_2_0_14
diff tool_dependencies.xml @ 0:995175fb61c4 draft
Uploaded
author | iuc |
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date | Thu, 14 May 2015 09:38:47 -0400 |
parents | |
children | 0c83efe0936b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu May 14 09:38:47 2015 -0400 @@ -0,0 +1,25 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="tophat" version="2.0.14"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + <actions> + <action type="download_by_url">http://tophat.cbcb.umd.edu/downloads/tophat-2.0.14.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> + <action type="make_install" /> + </actions> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme /> + </package> +</tool_dependency>