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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="tophat" version="2.0.14">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions architecture="x86_64" os="linux">
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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11 </action>
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12 </actions>
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13 <actions>
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14 <action type="download_by_url">http://tophat.cbcb.umd.edu/downloads/tophat-2.0.14.tar.gz</action>
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15 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
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16 <action type="make_install" />
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17 </actions>
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18 <action type="set_environment">
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19 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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20 </action>
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21 </actions_group>
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22 </install>
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23 <readme />
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24 </package>
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25 </tool_dependency>
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