Mercurial > repos > iuc > quast
annotate test-data/test1_output.tsv @ 4:0834c823d4b9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
author | iuc |
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date | Mon, 12 Feb 2018 09:05:20 -0500 |
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children | 81df4950d65b |
rev | line source |
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4
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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1 Assembly contigs2_fna contigs1_fna |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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2 # contigs (>= 0 bp) 1 3 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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3 # contigs (>= 1000 bp) 1 3 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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4 Total length (>= 0 bp) 6650 6710 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
5 Total length (>= 1000 bp) 6650 6710 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
6 # contigs 1 3 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
7 Largest contig 6650 3980 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
8 Total length 6650 6710 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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9 Reference length 6650 6650 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
10 GC (%) 52.00 51.28 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
11 Reference GC (%) 52.00 52.00 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
12 N50 6650 3980 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
13 NG50 6650 3980 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
14 N75 6650 1610 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
15 NG75 6650 1610 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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16 L50 1 1 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
17 LG50 1 1 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
18 L75 1 2 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
19 LG75 1 2 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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20 # misassemblies 0 0 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
21 # misassembled contigs 0 0 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
22 Misassembled contigs length 0 0 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
23 # local misassemblies 0 0 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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24 # unaligned mis. contigs 0 0 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
25 # unaligned contigs 0 + 0 part 0 + 1 part |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
26 Unaligned length 0 1950 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
27 Genome fraction (%) 100.000 71.579 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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28 Duplication ratio 1.000 1.000 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
29 # N's per 100 kbp 0.00 0.00 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
30 # mismatches per 100 kbp 0.00 0.00 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
|
31 # indels per 100 kbp 0.00 0.00 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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32 # genes 6 + 0 part 3 + 3 part |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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33 Largest alignment 6650 2030 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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34 Total aligned length 6650 4760 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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35 NA50 6650 1610 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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36 NGA50 6650 1610 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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37 NA75 6650 - |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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38 NGA75 6650 - |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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39 LA50 1 2 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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40 LGA50 1 2 |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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41 LA75 1 - |
0834c823d4b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
iuc
parents:
diff
changeset
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42 LGA75 1 - |