Mercurial > repos > iuc > stacks2_clonefilter

comparison test-data/procrad/process_radtags.out @ 0:1b6d07160736 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 10:57:08 -0400
parents
children 42201b90e3f4
comparison
equal deleted inserted replaced
-1:000000000000 0:1b6d07160736
1 process_radtags v2.2, executed 2018-11-23 13:34:27
2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_2.dat --inline_null -e ecoRI -o stacks_outputs
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
4 R1.fastq 2222 0 0 4778 7000
5
6 Total Sequences 7000
7 Barcode Not Found 0
8 Low Quality 0
9 RAD Cutsite Not Found 4778
10 Retained Reads 2222
11
12 Barcode Filename Total NoRadTag LowQuality Retained
13 ATGGGG PopA_01 160 94 0 66
14 GGGTAA PopA_02 146 86 0 60
15 AGGAAA PopA_03 224 132 0 92
16 TTTAAG PopA_04 168 146 0 22
17 GGTGTG PopA_05 220 154 0 66
18 TGATGT PopA_06 214 147 0 67
19 GGTTGT PopA_07 182 137 0 45
20 ATAAGT PopA_08 232 164 0 68
21 AAGATA PopA_09 182 134 0 48
22 TGTGAG PopA_10 168 128 0 40
23 ATAGTT PopA_11 200 132 0 68
24 GGAAGG PopA_12 178 136 0 42
25 TTTGTG PopA_13 190 152 0 38
26 TTAAAT PopA_14 166 96 0 70
27 AATAAG PopA_15 152 74 0 78
28 AAGAGG PopA_16 174 112 0 62
29 TAGTGT PopA_17 242 146 0 96
30 TGGAAG PopA_18 148 98 0 50
31 GGGTTG PopA_19 110 64 0 46
32 CATCAT PopA_20 178 144 0 34
33 GGAGAG PopB_20 210 142 0 68
34 GTTTTA PopB_01 136 90 0 46
35 TGATAA PopB_02 166 108 0 58
36 GTTGAT PopB_03 148 74 0 74
37 AGATTA PopB_04 180 156 0 24
38 GTATAG PopB_05 136 106 0 30
39 TTGGGA PopB_06 166 112 0 54
40 ATATAT PopB_07 242 156 0 86
41 GATGAG PopB_08 208 152 0 56
42 GGGAAT PopB_09 198 126 0 72
43 AGTAAT PopB_10 164 120 0 44
44 GGGATA PopB_11 146 90 0 56
45 GAGAAG PopB_12 162 110 0 52
46 AGTAGA PopB_13 204 146 0 58
47 AAGGAT PopB_14 180 128 0 52
48 AGGGTA PopB_15 134 72 0 62
49 TGTTTT PopB_16 138 98 0 40
50 ATGATG PopB_17 142 100 0 42
51 GAGTTA PopB_18 160 112 0 48
52 ATGTAG PopB_19 146 104 0 42
53
54 Sequences not recorded
55 Barcode Total