annotate qtlmap_15/readme.txt @ 0:fa0693cf076b draft

Uploaded
author nanettec
date Fri, 18 Mar 2016 05:51:39 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
1 ======================================================================
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
2 qtlmap_15
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
3 ======================================================================
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
4 ### This is the second tool in the eQTL mapper pipeline:
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
5 split_15, qtlmap_15, save_z_15, integrate_15
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
6
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
7 Link to the workflow (for import): http://chewbacca.bi.up.ac.za:8080/u/nanette/w/15-parallel
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
8
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
9 QTL Cartographer is employed for eQTL mapping. The results are parsed.
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
10
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
11 This tool must be executed 15 times in parallel; every time with a different .inp input file (every time the .map and parameters.txt input files are used). Each execution will produce one .txt output file.
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
12
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
13 ---------------
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
14 Installation
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
15 ---------------
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
16
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
17 The eQTL mapper pipeline is available for:
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
18 * command line usage
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
19 * integration into Galaxy servers
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
20
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
21
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
22 Requirements: Python 2.7
fa0693cf076b Uploaded
nanettec
parents:
diff changeset
23 QTL Cartographer 1.17