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1 <tool id="fasta_to_fastq" name="FASTA to FASTQ" version="1.0">
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2 <description>Convert a FASTA file to a FASTQ file</description>
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3 <requirements>
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4 <requirement type="package" version="1.79">biopython</requirement>
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5 </requirements>
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6 <command><![CDATA[
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7 python '$__tool_directory__/fasta2fastq.py'
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8 -i "$inputfile"
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9 -s "$score"
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10 -o "$output"
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11 ]]>
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12 </command>
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13 <inputs>
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14 <param type="data" name="inputfile" format="fasta" label="Input fasta file"/>
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15 <param type="integer" name="score" label="Quality score" value="40" help="Quality score you wanted for each base in all reads. (default: 40)"/>
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16 </inputs>
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17 <outputs>
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18 <data name="output" format="fastq" label="${tool.name} on ${on_string}"/>
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19 </outputs>
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20 <help> <![CDATA[
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21 Takes a FASTA file and converts it to a FASTQ file by adding a static quality score. The default quality score for each base in all reads is 40.
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22 ]]>
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23 </help>
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24 </tool> |
