annotate tool_dependencies.xml @ 1:5f69a2c1b9c9 draft

Uploaded version 1.0.0.0.

<?xml version="1.0"?>
<tool_dependency>
  <package name="python_xlsxwriter" version="0.8.4">
    <install version="1.0">
      <actions>
	<action type="download_by_url">https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.8.4.tar.gz</action>
        <action type="make_directory">$INSTALL_DIR/lib/python</action>
        <action type="shell_command">
          export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
          python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
        </action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
        </action>
      </actions>
    </install>
    <readme>Installs Python module XlsxWriter 0.8.4</readme>
  </package>
  <package name="rnachipintegrator" version="1.0.0">
    <install version="1.0">
      <actions>
	<action type="download_by_url">https://pypi.python.org/packages/source/R/RnaChipIntegrator/RnaChipIntegrator-1.0.0.tar.gz</action>
        <action type="shell_command">
	  pip install --no-use-wheel --install-option "--prefix=$INSTALL_DIR" .
	</action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
	</action>
      </actions>
    </install>
    <readme>Installs RnaChipIntegrator 1.0.0 from PyPI</readme>
  </package>
</tool_dependency>