Mercurial > repos > rnateam > blockbuster

view tool_dependencies.xml @ 0:6ae946589f04 draft

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author rnateam
date Sat, 22 Feb 2014 06:21:02 -0500
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children 0f3d3f9f120f
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<?xml version="1.0"?>
<tool_dependency>
    <!-- blockbuster seems to have no version number, assuming a really small one -->
    <package name="blockbuster" version="0.0.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>blockbuster.x</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
        GCC is needed to compilte Blockbuster.
        http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
        </readme>
    </package>
</tool_dependency>