Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/galaxy/tool_util/deps/brew_util.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/galaxy/tool_util/deps/brew_util.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,39 @@ +""" brew_exts defines generic extensions to Homebrew this file +builds on those abstraction and provides Galaxy specific functionality +not useful to the brew external commands. +""" +from ..deps import brew_exts + +DEFAULT_TAP = "homebrew/science" + + +class HomebrewRecipe: + + def __init__(self, recipe, version, tap): + self.recipe = recipe + self.version = version + self.tap = tap + + +def requirements_to_recipes(requirements): + return filter(None, map(requirement_to_recipe, requirements)) + + +def requirement_to_recipe(requirement): + if requirement.type != "package": + return None + # TOOD: Allow requirements to annotate optionalbrew specific + # adaptions. + recipe_name = requirement.name + recipe_version = requirement.version + return HomebrewRecipe(recipe_name, recipe_version, tap=DEFAULT_TAP) + + +def requirements_to_recipe_contexts(requirements, brew_context): + def to_recipe_context(homebrew_recipe): + return brew_exts.RecipeContext( + homebrew_recipe.recipe, + homebrew_recipe.version, + brew_context + ) + return map(to_recipe_context, requirements_to_recipes(requirements))