Mercurial > repos > testtool > get_gr_set
annotate GRsetFromGEO/GRsetFromGEO.R @ 54:5752f23e451f draft
Uploaded
author | testtool |
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date | Thu, 10 Aug 2017 06:20:22 -0400 |
parents | fe7d4d8591c5 |
children | e23909ae6676 |
rev | line source |
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39 | 1 require(minfi, quietly = TRUE) |
2 | |
5 | 3 options(warn = -1) |
22 | 4 options('download.file.method.GEOquery' = 'wget') |
21 | 5 options('GEOquery.inmemory.gpl'=FALSE) |
17 | 6 |
5 | 7 |
8 args <- commandArgs(trailingOnly = TRUE) | |
16 | 9 input = args[1] |
5 | 10 output = args[2] |
39 | 11 |
54 | 12 GRset <- getGenomicRatioSetFromGEO(input) |
5 | 13 |
14 save(GRset,file = output) | |
38 | 15 |
54 | 16 |