Mercurial > repos > vimalkumarvelayudhan > riboplot
annotate README.rst @ 33:42fe64cac818
Add bedtools as a dependency for riboplot
author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
---|---|
date | Fri, 30 Oct 2015 12:14:40 +0000 |
parents | fc2094c0f355 |
children | de451be99b93 |
rev | line source |
---|---|
14
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
1 RiboPlot |
18
cff63cf0dea8
Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
15
diff
changeset
|
2 ======== |
14
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
3 RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format). |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
4 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
5 There are two programs in the package: |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
6 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
7 **riboplot** |
18
cff63cf0dea8
Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
15
diff
changeset
|
8 |
14
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
9 Plot and output read counts (csv) for a single transcript. |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
10 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
11 **ribocount** |
18
cff63cf0dea8
Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
15
diff
changeset
|
12 |
14
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
13 Output read counts for all transcripts in an alignment. |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
14 |
18
cff63cf0dea8
Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
15
diff
changeset
|
15 Free software: GPL license |
14
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
16 |
30
b26c8f3b5aa6
Use latest version of riboplot from PyPI (0.2.1)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
29
diff
changeset
|
17 Documentation: http://pythonhosted.org/riboplot |
18
cff63cf0dea8
Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
15
diff
changeset
|
18 |
32
fc2094c0f355
Update README (notes on matplotlib)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
30
diff
changeset
|
19 Repository: https://github.com/vimalkvn/riboplot |
18
cff63cf0dea8
Update tool_dependencies to install package from pip
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
15
diff
changeset
|
20 |
28
60bbd8ebe314
Working install (virtualenv)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
18
diff
changeset
|
21 |
60bbd8ebe314
Working install (virtualenv)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
18
diff
changeset
|
22 .. note:: |
60bbd8ebe314
Working install (virtualenv)
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
18
diff
changeset
|
23 |
33
42fe64cac818
Add bedtools as a dependency for riboplot
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
32
diff
changeset
|
24 Matplotlib installation requires freetype headers and libraries installed |
42fe64cac818
Add bedtools as a dependency for riboplot
Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
parents:
32
diff
changeset
|
25 (``libfreetype6-dev`` on Ubuntu 14.04). |
14
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
7
diff
changeset
|
26 |