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Update README (notes on matplotlib)
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Fri, 30 Oct 2015 10:10:05 +0000
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1 RiboPlot
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2 ========
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3 RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
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5 There are two programs in the package:
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7 **riboplot**
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9 Plot and output read counts (csv) for a single transcript.
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11 **ribocount**
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13 Output read counts for all transcripts in an alignment.
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15 Free software: GPL license
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17 Documentation: http://pythonhosted.org/riboplot
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19 Repository: https://github.com/vimalkvn/riboplot
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22 .. note::
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24 1. RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed.
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26 This release of riboplot has been tested with bedtools version ``2.17.0``.
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28 On Ubuntu and derivatives, bedtools can be installed from the repositories using::
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30 sudo apt-get install bedtools
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32 2. Matplotlib installation requires freetype headers and libraries installed
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33 (``libfreetype6-dev`` on Ubuntu 14.04).