annotate test-data/e_coli_1-Glc_exact.ftbl @ 0:9b03a930b08b draft

"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
author workflow4metabolomics
date Mon, 04 May 2020 03:24:12 -0400
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1 PROJECT
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2 NAME VERSION FORMAT DATE COMMENT
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3 K12_MG1655.ftbl 1 101109 modele E coli K12 MG1655 WT avec voies centrales completes et voies biomasse simplifiees
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4
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5 NETWORK
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6 FLUX_NAME EDUCT_1 EDUCT_2 PRODUCT_1 PRODUCT_2
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7
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8 // Glycolyse.
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9 // PPP
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10 // TCA
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11 // voies anaplerotiques: pepc. enz malique
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12 // voie glyoxylate
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13 // avec pool interne unique de CO2 provenant soit du metabolisme soit de l'exterieur (CO2upt laisse libre)
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14 // saisie differentielle des substrats marques
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15
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16
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17 // Uptake substrats
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18
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19 Glucupt Gluc Glc6P
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20 #ABCDEF #ABCDEF
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21 // CO2upt CO2_ext CO2 // entree de CO2 non marque
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22 // #A #A // ce flux est a laisser libre
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23
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24 // FTHF0 FTHF_0 FTHF // prise en charge de FTHF non marque
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25 // #A #A
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26
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27 // FTHF1 FTHF_1 FTHF // prise en charge de FTHF marque
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28 // #a #a
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29
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30
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31 // Embden Meyerhof Parnas Pathway
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32
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33 pgi Glc6P Fru6P
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34 #ABCDEF #ABCDEF
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35
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36 pfk Fru6P FruBP
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37 #ABCDEF #ABCDEF
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38
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39 ald FruBP GA3P GA3P
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40 #ABCDEF #CBA #DEF
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41
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42 // tpi DHAP GA3P
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43 // #ABC #CBA
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44
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45 pgk GA3P PGA
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46 #ABC #ABC
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47
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48 eno PGA PEP
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49 #ABC #ABC
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50
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51 pyk PEP Pyr
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52 #ABC #ABC
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53
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54
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55 // Methylglyoxal Pathway
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56
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57 // mgs DHAP Pyr
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58 // #ABC #ABC
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59
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60
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61 // Pentose Phosphate Pathway
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62
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63 zwf Glc6P Gnt6P
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64 #ABCDEF #ABCDEF
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65
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66 gnd Gnt6P CO2 Rib5P
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67 #ABCDEF #A #BCDEF
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68
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69 edd Gnt6P Pyr GA3P
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70 #ABCDEF #ABC #DEF
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71
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72 // ta Ery4P Fru6P GA3P Sed7P
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73 // #ABCD #abcdef #def #abcABCD
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74
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75 // tk1 GA3P Sed7P Rib5P Rib5P
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76 // #ABC #abcdefg #abABC #cdefg
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77
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78 // tk2 GA3P Fru6P Rib5P Ery4P
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79 // #ABC #abcdef #abABC #cdef
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80
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81 ta GA3P Sed7P Ery4P Fru6P
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82 #ABC #abcdefg #defg #abcABC
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83
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84 tk1 Rib5P Rib5P GA3P Sed7P
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85 #ABCDE #abcde #CDE #ABabcde
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86
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87 tk2 Rib5P Ery4P GA3P Fru6P
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88 #ABCDE #abcd #CDE #ABabcd
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89
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90
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91 // Tricarboxylic Acid Cycle
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92
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93 pdh Pyr AcCoA CO2
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94 #ABC #BC #A
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95
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96 citsynth AcCoA OAA ICit
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97 #AB #abcd #dcbaBA
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98
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99 idh ICit AKG CO2
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100 #ABCDEF #ABCEF #D
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101
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102 akgdh AKG Suc CO2
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103 #ABCDE #BCDE #A
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104
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105 fum_a Suc Mal
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106 #ABCD #ABCD
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107
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108 fum_b Suc Mal
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109 #ABCD #DCBA
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110
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111 maldh Mal OAA
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112 #ABCD #ABCD
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113
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114
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115 // Glyoxylate Shunt
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116
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117 // gs1 ICit GlyOx Suc
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118 // #ABCDEF #AB #DCEF
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119
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120 // gs2 GlyOx AcCoA OAA
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121 // #AB #ab #ABba
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122
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123
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124 // Anaplerotic Reactions
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125
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
126 ppc PEP CO2 OAA // PEPcarboxylase
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
127 #ABC #a #ABCa
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
128
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
129 mae Mal Pyr CO2 // enzyme malique
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
130 #ABCD #ABC #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
131
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
132 // pck OAA PEP CO2 // PEP carboxykinase
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
133 // #ABCD #ABC #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
134
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
135
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
136 // Biosynthetic Pathways
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
137
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
138 // Glucose-6-Phosphate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
139
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
140 bs_glc6P Glc6P BM_Glc6P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
141 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
142
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
143 // Fructose-6-Phosphate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
144
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
145 bs_fru6P Fru6P BM_Fru6P // sortie de Fru6P pour biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
146 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
147
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
148 // Phosphoglycerate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
149
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
150 bs_pga PGA BM_PGA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
151 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
152
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
153 bs_pga_aux BM_PGA PGA_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
154 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
155
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
156 bs_pga1 BM_PGA Ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
157 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
158
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
159 bs_pga1_aux Ser Ser_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
160 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
161
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
162 bs_pga2 Ser Cys // ce flux sert de sortie pour PGA hors formation de Gly
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
163 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
164
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
165 bs_pga2_aux Cys Cys_Aux // ce flux sert de sortie pour PGA hors formation de Gly
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
166 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
167
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
168 bs_pga3 Ser Gly FTHF // formation de gly pour biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
169 #ABC #AB #C // ce flux est reversible
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
170
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
171 bs_pga3_aux Gly Gly_Aux // pour conserver Gly comme metabolite intracellulaire
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
172 #AB #AB
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
173
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
174 // TrioseP Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
175
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
176 bs_DHAP GA3P Glp // formation glycerolP pour lipides
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
177 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
178
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
179 // Pyruvate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
180
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
181 bs_pyr Pyr BM_Pyr
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
182 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
183
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
184 bs_pyr1 BM_Pyr Ala
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
185 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
186
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
187 bs_pyr1_aux Ala Ala_Aux // pour conserver Ala comme metabolite intracellulaire
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
188 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
189
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
190 bs_pyr2 BM_Pyr BM_Pyr AKV CO2 // AKV et Val ont le meme squelette C
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
191 #ABC #abc #ABbcC #a // cette reaction permet d'utiliser eventuellement les donnees obtenues sur Val
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
192
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
193 bs_pyr4 AKV Val // permet de tenir compte de la sortie de Val
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
194 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
195
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
196 bs_pyr4_aux Val Val_Aux // permet de tenir compte de la sortie de Val
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
197 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
198
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
199 bs_pyr3 AKV BM_AcCoA Leu CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
200 #ABCDE #ab #abBCDE #A
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
201
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
202 bs_pyr3_aux Leu Leu_Aux // pour conserver Leu comme metabolite intracellulaire
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
203 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
204
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
205
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
206 // Erythrose-4-Phosphate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
207
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
208 bs_e4p Ery4P BM_Ery4P // pour utiliser les donnees sur Ery4P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
209 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
210
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
211 // bs_e4p_aux BM_Ery4P Ery4P_aux // pour utiliser les donnees sur Ery4P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
212 // #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
213
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
214
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
215 // Ribose-5-Phosphate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
216
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
217 bs_rib5p Rib5P BM_Rib5P // pour utiliser les donnees sur Rib5P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
218 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
219
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
220 bs_rib5p1 BM_Rib5P FTHF His // pour utiliser les donnees sur Rib5P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
221 #ABCDE #a #EDCBAa
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
222
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
223 bs_rib5p1_aux His His_Aux // sortie pour conserver His comme metabolite intracellulaire
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
224 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
225
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
226 bs_rib5p2 BM_Rib5P Ri5P_Aux // sortie de Ri5P pour autres besoins que His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
227 #ABCDE #ABCDE // ce flux est important pour ne pas imposer de fausses contraintes sur FTHF si on considerait His comme seule sortie
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
228
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
229
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
230 // Aromatic Amino Acids
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
231
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
232 bs_pep PEP BM_PEP
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
233 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
234
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
235 bs_pep1 BM_PEP BM_Ery4P DAHP
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
236 #ABC #abcd #ABCabcd
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
237
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
238 bs_pep2 BM_PEP DAHP Chor
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
239 #ABC #abcdefg #ABCabcdefg
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
240
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
241 bs_pep3a Chor Phe CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
242 #ABCDEFGHIJ #ABCEFGHIJ #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
243
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
244 bs_pep3b Chor Phe CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
245 #ABCDEFGHIJ #ABCEJIHGF #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
246
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
247 bs_pep3_aux Phe Phe_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
248 #ABCEFGHIJ #ABCEFGHIJ
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
249
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
250 bs_pep4a Chor Tyr CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
251 #ABCDEFGHIJ #ABCEFGHIJ #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
252
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
253 bs_pep4b Chor Tyr CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
254 #ABCDEFGHIJ #ABCEJIHGF #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
255
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
256 bs_pep4_aux Tyr Tyr_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
257 #ABCEFGHIJ #ABCEFGHIJ
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
258
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
259 bs_pep5 BM_PEP PEP_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
260 #ABC #ABC
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
261
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
262 bs_pep6 Chor BM_Rib5P Trp PyrCO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
263 #ABCDEFGHIJ #abcde #edcbaJEFGHI #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
264
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
265 bs_pep6_aux Trp Trp_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
266 #ABCDEFGHIJK #ABCDEFGHIJK
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
267
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
268 bs_pep7 PyrCO2 Pyr CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
269 #ABCD #ABC #D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
270
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
271
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
272 // Acetyl-CoA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
273
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
274 bs_accoa AcCoA BM_AcCoA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
275 #AB #AB
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
276
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
277 bs_accoa_aux BM_AcCoA AcCoA_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
278 #AB #AB
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
279
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
280
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
281 // Alpha-Ketoglutarate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
282
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
283 bs_akg AKG BM_AKG // Les donnees sur Glu peuvent etre assimilee a AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
284 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
285
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
286 bs_akg1 BM_AKG Glu // Les donnees sur Glu peuvent etre assimilee a AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
287 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
288
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
289 bs_akg2 Glu Pro // Les donnees sur Glu peuvent etre assimilee a AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
290 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
291
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
292 bs_akg3 Glu Gln // Les donnees sur Glu peuvent etre assimilee a AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
293 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
294
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
295 bs_akg4 Glu CO2 Arg // Les donnees sur Glu peuvent etre assimilee a AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
296 #ABCDE #a #ABCDEa
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
297
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
298 bs_akg4_aux Arg Arg_Aux // Les donnees sur Glu peuvent etre assimilee a AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
299 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
300
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
301
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
302 // Oxaloacetate Family
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
303
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
304 bs_oaa OAA BM_OAA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
305 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
306
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
307 bs_oaa1 BM_OAA Asp
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
308 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
309
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
310 bs_oaa1_aux Asp Asp_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
311 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
312
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
313 bs_oaa2 Thr BM_Pyr Ile CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
314 #ABCD #abc #ABbCDc #a
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
315
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
316 bs_oaa2_aux Ile Ile_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
317 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
318
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
319 bs_oaa3a BM_OAA BM_Pyr Lys CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
320 #ABCD #abc #ABCDcb #a
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
321
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
322 bs_oaa3b BM_OAA BM_Pyr Lys CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
323 #ABCD #abc #abcDCB #A
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
324
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
325 bs_oaa3_aux Lys Lys_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
326 #ABCDEF #ABCDEF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
327
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
328 bs_oaa4 BM_OAA OAA_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
329 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
330
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
331 bs_oaa5 BM_OAA Thr
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
332 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
333
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
334 bs_oaa5_aux Thr Thr_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
335 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
336
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
337 bs_oaa6 BM_OAA FTHF Met
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
338 #ABCD #a #ABCDa
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
339
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
340 bs_oaa6_aux Met Met_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
341 #ABCDE #ABCDE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
342
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
343 bs_oaa7 BM_OAA Asn
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
344 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
345
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
346 bs_oaa7_aux Asn Asn_Aux
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
347 #ABCD #ABCD
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
348
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
349
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
350 // Flux de sortie
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
351
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
352 out_co2 CO2 CO2_out // Sortie de CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
353 #A #A
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
354
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
355 out_Ac AcCoA Acetate // Sortie d'acetate
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
356 #AB #AB
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
357
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
358 out_FTHF FTHF FTHF_out
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
359 #A #A
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
360
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
361 FLUXES
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
362 NET
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
363 NAME FCD VALUE(F/C) ED_WEIGHT LOW(F) INC(F) UP(F)
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
364
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
365 Glucupt C 1
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
366 // CO2upt F 0.669589
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
367 // FTHF0 F 0.00224836
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
368 // FTHF1 F 0.001
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
369
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
370 pgi D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
371 pfk D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
372 ald D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
373 // tpi D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
374 pgk D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
375 eno D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
376 pyk F 1.54425507
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
377
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
378 zwf F 0.14233479
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
379 gnd F 0.14223479
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
380 edd D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
381 ta D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
382 tk1 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
383 tk2 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
384
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
385 pdh D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
386 citsynth D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
387 idh D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
388 akgdh D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
389 fum_a D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
390 fum_b D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
391 maldh D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
392
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
393 // gs1 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
394 // gs2 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
395
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
396 ppc D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
397 mae D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
398 // pck D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
399
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
400 // flux de biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
401
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
402 bs_glc6P C 0.0109 // sortie de G6P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
403 bs_fru6P C 0.0038 // sortie de F6P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
404 bs_pga C 0.0791 // sortie de PGA pour formation de biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
405 bs_pga_aux D // sortie de PGA pour formation de biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
406 bs_pga1 D // conversion PGA donne ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
407 bs_pga1_aux C 0.0109 // conversion PGA donne ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
408 bs_pga2 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
409 bs_pga2_aux C 0.0046 // conversion PGA donne Cys
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
410 bs_pga3 D // reaction de synthese de Gly
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
411 bs_pga3_aux C 0.0308 // sortie de Gly
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
412 bs_DHAP C 0.0068 // formation de glycerolP pour lipides
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
413 bs_pyr C 0.1501 // avant : 0.1547 // sortie de Pyr pour formation de biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
414 bs_pyr1 D // formation d'Ala
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
415 bs_pyr1_aux D // sortie d'Ala. correspond aux sorties de Pyr qui ne sont pas associees a Val et Leu
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
416 bs_pyr2 D // synthese d'AKV. consomme 2 Pyr
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
417 bs_pyr4 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
418 bs_pyr4_aux C 0.0213 // sortie correspondant a l'utilisation de Val pour la biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
419 bs_pyr3 D // synthese de Leu (AKV+AcCoA consommes)
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
420 bs_pyr3_aux C 0.0227 // sortie de Leu
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
421 bs_e4p D // sortie d'Ery4p pour biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
422 // bs_e4p_aux C 0 // sortie d'Ery4p pour Trp
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
423 bs_rib5p C 0.0476 // synthese d'His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
424 bs_rib5p1 D // synthese d'His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
425 bs_rib5p1_aux C 0.0048 // sortie d'His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
426 bs_rib5p2 D // sortie de Rib5P autre que His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
427 bs_pep C 0.0381 // sortie de PEP
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
428 bs_pep1 D // sortie de PEP
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
429 bs_pep2 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
430 bs_pep3a D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
431 bs_pep3b D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
432 bs_pep3_aux C 0.0093
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
433 bs_pep4a D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
434 bs_pep4b D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
435 bs_pep4_aux C 0.0069
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
436 bs_pep5 C 0.0027
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
437 bs_pep6 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
438 bs_pep6_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
439 bs_pep7 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
440 bs_accoa C 0.1565 // sortie d'AcCoA pour biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
441 bs_accoa_aux D // sortie d'AcCoA pour biomasse en dehors de synthese Leu
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
442 bs_akg C 0.0571 // sortie d'AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
443 bs_akg1 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
444 bs_akg2 C 0.0111
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
445 bs_akg3 C 0.0132
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
446 bs_akg4 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
447 bs_akg4_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
448 bs_oaa C 0.0947 // sortie d'OAA pour formation de biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
449 bs_oaa1 D // sortie d'OAA pour Asp
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
450 bs_oaa1_aux C 0.0121 // sortie d'Asp
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
451 bs_oaa2 D // synthese d'Ile
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
452 bs_oaa2_aux C 0.0146 // sortie d'Ile
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
453 bs_oaa3a D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
454 bs_oaa3b D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
455 bs_oaa3_aux C 0.0173
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
456 bs_oaa4 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
457 bs_oaa5 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
458 bs_oaa5_aux C 0.0128
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
459 bs_oaa6 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
460 bs_oaa6_aux C 0.0077
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
461 bs_oaa7 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
462 bs_oaa7_aux C 0.0121
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
463
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
464 // Flux de sortie
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
465
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
466 out_co2 D // sortie de CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
467 out_Ac F 0.213000005
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
468 out_FTHF D // sortie de FTHF. a laisser libre pour ne pas imposer de contraintes sur FTHF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
469
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
470
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
471 XCH
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
472 NAME FCD VALUE(F/C) ED_WEIGHT LOW(F) INC(F) UP(F)
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
473
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
474 Glucupt C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
475 // CO2upt D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
476 // FTHF0 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
477 // FTHF1 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
478
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
479 pgi C 0.752386 // 2011-02-22 ssg: was F => often unresolved with --irand option
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
480 pfk C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
481 ald F 0.420281957
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
482 // tpi F 0.5
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
483 pgk C 0.984718 // 2011-02-22 ssg: was F => often unresolved with --irand option
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
484 eno F 0.999
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
485 pyk C 0.0109591 // 2010-10-01 ssg: was F => unresolved if co2 uptake is unlimited
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
486
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
487 zwf C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
488 gnd C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
489 edd C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
490 ta F 0.361648085
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
491 tk1 F 0.151671492
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
492 tk2 F 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
493
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
494 pdh C 0.0322745 // 2010-10-02 ssg: was F, otherwise unsolvable in monte-carlo
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
495 citsynth C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
496 idh C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
497 akgdh C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
498 fum_a F 0.3013683
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
499 fum_b D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
500 maldh C 0.647115 //********************************************** C pour analyse de sensibilite, F pour minimisation
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
501
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
502 // gs1 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
503 // gs2 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
504
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
505 ppc F 0.147615337
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
506 mae C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
507 // pck C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
508
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
509 bs_glc6P D // sortie de G6P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
510 bs_fru6P D // sortie de F6P
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
511 bs_pga C 0 // conversion PGA donne Ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
512 bs_pga_aux D // conversion PGA donne Ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
513 bs_pga1 C 0 // conversion PGA donne Ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
514 bs_pga1_aux D // conversion PGA donne Ser
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
515 bs_pga2 C 0 // ser donne Cys. correspond a la sortie de PGA pour biomasse autre que formation Gly
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
516 bs_pga2_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
517 bs_pga3 C 0.011799 // reaction de synthese de Gly. cette reaction est reversible
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
518 bs_pga3_aux D // sortie de Gly
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
519 bs_DHAP D // formation de glycerolP pour lipides
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
520 bs_pyr C 0 // formation d'Ala
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
521 bs_pyr1 C 0 // formation d'Ala
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
522 bs_pyr1_aux D // sortie d'Ala. correspond aux sorties de Pyr qui ne sont pas associees a Val et Ile
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
523 bs_pyr2 C 0 // synthese d'AKV. consomme 2 Pyr
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
524 bs_pyr4 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
525 bs_pyr4_aux D // sortie correspondant a l'utilisation de Val pour la biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
526 bs_pyr3 C 0 // synthese de Leu (AKV+AcCoA consommes)
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
527 bs_pyr3_aux D // sortie de Leu
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
528 bs_e4p C 0 // sortie d'Ery4p
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
529 // bs_e4p_aux D // sortie d'Ery4p pour Trp
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
530 bs_rib5p C 0 // synthese d'His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
531 bs_rib5p1 C 0 // synthese d'His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
532 bs_rib5p1_aux D // sortie d'His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
533 bs_rib5p2 D // sortie de Rib5P autre que His
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
534 bs_accoa C 0 // sortie d'AcCoA pour biomasse
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
535 bs_accoa_aux D // sortie d'AcCoA pour biomasse en dehors de synthese Leu
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
536 bs_pep C 0 // sortie de PEP
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
537 bs_pep1 C 0 // sortie de PEP
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
538 bs_pep2 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
539 bs_pep3a C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
540 bs_pep3b C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
541 bs_pep3_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
542 bs_pep4a C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
543 bs_pep4b C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
544 bs_pep4_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
545 bs_pep5 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
546 bs_pep6 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
547 bs_pep6_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
548 bs_pep7 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
549 bs_akg C 0 // sortie d'AKG
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
550 bs_akg1 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
551 bs_akg2 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
552 bs_akg3 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
553 bs_akg4 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
554 bs_akg4_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
555 bs_oaa C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
556 bs_oaa1 C 0 // sortie d'OAA autres que Met
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
557 bs_oaa1_aux D // sortie d'OAA autres que Met
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
558 bs_oaa2 C 0 // synthese de Met
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
559 bs_oaa2_aux D // sortie de Met
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
560 bs_oaa3a C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
561 bs_oaa3b C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
562 bs_oaa3_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
563 bs_oaa4 D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
564 bs_oaa5 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
565 bs_oaa5_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
566 bs_oaa6 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
567 bs_oaa6_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
568 bs_oaa7 C 0
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
569 bs_oaa7_aux D
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
570
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
571 // Flux de sortie
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
572
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
573 out_co2 D // sortie de CO2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
574 out_Ac D // sortie d'acetate
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
575 out_FTHF D // sortie de FTHF. a laisser libre pour ne pas imposer de contraintes sur FTHF
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
576
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
577
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
578 EQUALITIES
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
579 NET
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
580 VALUE FORMULA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
581
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
582 0 fum_a-fum_b // scrambling reaction
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
583 0 bs_oaa3a-bs_oaa3b
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
584 0 bs_pep3a-bs_pep3b
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
585 0 bs_pep4a-bs_pep4b
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
586
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
587 XCH
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
588 VALUE FORMULA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
589
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
590 0 fum_a-fum_b
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
591
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
592 INEQUALITIES
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
593 NET
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
594 VALUE COMP FORMULA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
595 // Inequalities for Input and Output Fluxes are generated automatically
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
596 1 <= pyk
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
597 0.0001 <= edd
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
598 0.0001 <= gnd
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
599 0.0001 <= zwf
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
600 0.0001 <= ppc
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
601 0.0001 <= mae
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
602 // 2 >= CO2upt // 2010-08-18 too high value makes jacobian rank deficient
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
603 XCH
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
604 VALUE COMP FORMULA
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
605 // Inequalities for Input and Output Fluxes are generated automatically
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
606
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
607
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
608 FLUX_MEASUREMENTS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
609 FLUX_NAME VALUE DEVIATION // Val Dev
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
610 out_Ac 0.213 0.0001
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
611
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
612 LABEL_INPUT
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
613 META_NAME ISOTOPOMER VALUE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
614
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
615 Gluc #100000 0.8
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
616 #000000 0.2
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
617 // CO2_ext #0 0.989
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
618 // #1 0.011
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
619
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
620 // FTHF_0 #0 1
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
621 // FTHF_1 #1 1
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
622
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
623
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
624 LABEL_MEASUREMENTS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
625 META_NAME CUM_GROUP VALUE DEVIATION CUM_CONSTRAINTS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
626 // Example
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
627
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
628 PEAK_MEASUREMENTS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
629 META_NAME PEAK_NO VALUE_S VALUE_D- VALUE_D+ VALUE_DD VALUE_T DEVIATION_S DEVIATION_D- DEVIATION_D+ DEVIATION_DD/T
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
630
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
631
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
632 MASS_SPECTROMETRY
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
633 META_NAME FRAGMENT WEIGHT VALUE DEVIATION
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
634
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
635 // Deviation fixee a 0.02 // correction inoc 0.062
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
636
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
637
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
638
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
639 Suc 1,2,3,4 1 0.371605319 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
640 2 0.360829749 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
641 3 0.208425325 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
642 4 0.059139607 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
643 // Mal 1,2,3,4 0 0.164619329483 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
644 // 1 0.110072868518 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
645 // 2 0.637801316225333 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
646 // 3 0.0863461044204333 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
647 // 4 0.00116038135315367 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
648 ICit 1,2,3,4,5,6 0 0.131864539419667 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
649 1 0.225857638569 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
650 2 0.256421170949333 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
651 3 0.209230210478667 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
652 4 0.116863585449667 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
653 5 0.0457727744643333 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
654 6 0.0139900806697867 0.02
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
655 PEP 1,2,3 0 0.421359839367667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
656 1 0.358998301162333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
657 2 0.0348521859365667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
658 3 0.184789673534 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
659 PGA 1,2,3 0 0.434335785072667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
660 1 0.352829683224667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
661 2 0.0323479804176 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
662 3 0.180486551285333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
663 FruBP 1,2,3,4,5,6 0 0.0738121029259333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
664 1 0.454450017158667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
665 2 0.160823529969333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
666 3 0.0944468077710667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
667 4 0.105281338489667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
668 5 0.0155016033633 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
669 6 0.0956846003217333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
670 Glc6P 1,2,3,4,5,6 0 0.0160587173349 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
671 1 0.673510772480667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
672 2 0.0930110047641 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
673 3 0.0280359937297 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
674 4 0.0397315614067667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
675 5 0.0145524520950667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
676 6 0.135099498189 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
677 Fru6P 1,2,3,4,5,6 0 0.0235029951295 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
678 1 0.624253565357667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
679 2 0.113068441282333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
680 3 0.0456605631765 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
681 4 0.0516089447155667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
682 5 0.0185881765378333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
683 6 0.123317313800333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
684 Rib5P 1,2,3,4,5 0 0.341615670498667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
685 1 0.25454117519 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
686 2 0.159027180368333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
687 3 0.113789577528667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
688 4 0.0615266612553333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
689 5 0.0694997351590667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
690 Gnt6P 1,2,3,4,5,6 0 0.0249552273874 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
691 1 0.672556163913 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
692 2 0.0866890773125333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
693 3 0.0313987199704333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
694 4 0.0314691889898667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
695 5 0.0138168327362333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
696 6 0.139114789690333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
697 // Ery4P 1,2,3,4 0 0.178453461108 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
698 // 1 0.412398433968333 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
699 // 2 0.273694508221667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
700 // 3 0.116142498670667 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
701 // 4 0.0193110980315 0.01
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
702
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
703 OPTIONS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
704 OPT_NAME OPT_VALUE
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
705 MATLAB_FOR_FLUX_EQ_CONSTR_MATR 1
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
706 //optctrl_history 1 // nlsic
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
707 //optctrl_trace 3 // BFGS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
708 //optctrl_reltol 1.e-10 // BFGS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
709 //optctrl_maxit 1000 // BFGS
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
710 posttreat_R plot_smeas.R
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
711 prl_exp e_coli_U-Glc_exact.ftbl
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
712 commandArgs --TIMEIT --noscale
9b03a930b08b "planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff changeset
713