annotate tool_dependencies.xml @ 0:ba819b65bef3 draft default tip

planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty

<?xml version="1.0"?>
<tool_dependency>
    <!-- Package trfBig -->
    <package name="trfBig" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_binary" target_directory="bin">
                    <url_template os="darwin">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/trfBig</url_template>
                    <url_template os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/trfBig</url_template>
                </action>
                <action type="chmod">
                    <file mode="750">$INSTALL_DIR/bin/trfBig</file>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
    </package>

    <!-- Package trf -->
    <!-- https://tandem.bu.edu/trf/downloads/trf407b.linux64 -->
    <package name="trf" version="4.07b">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url" target_directory="bin">
                       https://tandem.bu.edu/trf/downloads/trf407b.linux64
                    </action>
                    <action type="move_file" rename_to="trf">
                        <source>trf407b.linux64</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/bin/trf</file>
                    </action>
                    <action type="set_environment">
                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    </action>
                </actions>
                <actions architecture="x86_64" os="darwin">
                    <action type="download_by_url" target_directory="bin">
                        https://tandem.bu.edu/trf/downloads/trf407b.macos64
                    </action>
                    <action type="move_file" rename_to="trf" os="darwin">
                        <source>trf407b.macos64</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/bin/trf</file>
                    </action>
                    <action type="set_environment">
                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    </action>
                </actions>
            </actions_group> 
        </install>
        <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
    </package>
</tool_dependency>