Mercurial > repos > yqiancolumbia > ctk_test
comparison tag2profile.xml @ 0:0475e4175855 draft default tip
planemo upload commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty
author | yqiancolumbia |
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date | Mon, 30 Apr 2018 05:25:11 -0400 |
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1 <tool id="tag2profile" name="Generate bedgraph for visualization"> | |
2 <description></description> | |
3 <command interpreter="perl"> | |
4 /home/galaxy/tools/CTK/tag2profile.pl $bigFlag -v $ssFlag -exact -of bedgraph $weight $input $output | |
5 </command> | |
6 <inputs> | |
7 <param name="input" type="data" format="bed" label="Input BED file (.gz file is allowed)"/> | |
8 <param name="bigFlag" type="boolean" truevalue="-big" falsevalue="" checked="yes" label="Big file"/> | |
9 <param name="ssFlag" type="boolean" truevalue="-ss" falsevalue="" checked="yes" label="Separate strand"/> | |
10 <param name="weight" type="boolean" truevalue="-weight" falsevalue="" checked="no" label="Weight counts according to the score of each tag "/> | |
11 </inputs> | |
12 <outputs> | |
13 <data name="output" format="bedgraph" label="Generate bedgraph for visualization on ${on_string}"> | |
14 </data> | |
15 </outputs> | |
16 <help> | |
17 .. class:: infomark | |
18 | |
19 **What this tool does** | |
20 | |
21 This tool will take as input files in BED format and output bedgraph files for visualization in the genome browser. | |
22 </help> | |
23 </tool> |