Mercurial > repos > yqiancolumbia > ctk_test
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author | yqiancolumbia |
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date | Mon, 30 Apr 2018 05:25:11 -0400 |
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1 <tool id="tag2profile" name="Generate bedgraph for visualization"> |
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2 <description></description> |
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3 <command interpreter="perl"> |
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4 /home/galaxy/tools/CTK/tag2profile.pl $bigFlag -v $ssFlag -exact -of bedgraph $weight $input $output |
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5 </command> |
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6 <inputs> |
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7 <param name="input" type="data" format="bed" label="Input BED file (.gz file is allowed)"/> |
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8 <param name="bigFlag" type="boolean" truevalue="-big" falsevalue="" checked="yes" label="Big file"/> |
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9 <param name="ssFlag" type="boolean" truevalue="-ss" falsevalue="" checked="yes" label="Separate strand"/> |
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10 <param name="weight" type="boolean" truevalue="-weight" falsevalue="" checked="no" label="Weight counts according to the score of each tag "/> |
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11 </inputs> |
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12 <outputs> |
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13 <data name="output" format="bedgraph" label="Generate bedgraph for visualization on ${on_string}"> |
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14 </data> |
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15 </outputs> |
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16 <help> |
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17 .. class:: infomark |
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18 |
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19 **What this tool does** |
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20 |
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21 This tool will take as input files in BED format and output bedgraph files for visualization in the genome browser. |
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22 </help> |
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23 </tool> |