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planemo upload commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty
author yqiancolumbia
date Mon, 30 Apr 2018 05:25:11 -0400
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<tool id="tag2profile" name="Generate bedgraph for visualization">
  <description></description>
  <command interpreter="perl">
	/home/galaxy/tools/CTK/tag2profile.pl $bigFlag -v $ssFlag -exact -of bedgraph $weight  $input $output
  </command>
  <inputs>
	<param name="input" type="data" format="bed" label="Input BED file (.gz file is allowed)"/>
        <param name="bigFlag" type="boolean" truevalue="-big" falsevalue="" checked="yes" label="Big file"/>
	<param name="ssFlag" type="boolean" truevalue="-ss" falsevalue="" checked="yes" label="Separate strand"/>
	<param name="weight"  type="boolean" truevalue="-weight" falsevalue="" checked="no" label="Weight counts according to the score of each tag "/>
  </inputs>
  <outputs>
	<data name="output" format="bedgraph" label="Generate bedgraph for visualization on ${on_string}">
	</data>	
  </outputs>
  <help>
.. class:: infomark

**What this tool does**

This tool will take as input files in BED format and output bedgraph files for visualization in the genome browser.
  </help>
</tool>