Mercurial > repos > yqiancolumbia > ctk_test
view tag2profile.xml @ 0:0475e4175855 draft default tip
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author | yqiancolumbia |
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date | Mon, 30 Apr 2018 05:25:11 -0400 |
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<tool id="tag2profile" name="Generate bedgraph for visualization"> <description></description> <command interpreter="perl"> /home/galaxy/tools/CTK/tag2profile.pl $bigFlag -v $ssFlag -exact -of bedgraph $weight $input $output </command> <inputs> <param name="input" type="data" format="bed" label="Input BED file (.gz file is allowed)"/> <param name="bigFlag" type="boolean" truevalue="-big" falsevalue="" checked="yes" label="Big file"/> <param name="ssFlag" type="boolean" truevalue="-ss" falsevalue="" checked="yes" label="Separate strand"/> <param name="weight" type="boolean" truevalue="-weight" falsevalue="" checked="no" label="Weight counts according to the score of each tag "/> </inputs> <outputs> <data name="output" format="bedgraph" label="Generate bedgraph for visualization on ${on_string}"> </data> </outputs> <help> .. class:: infomark **What this tool does** This tool will take as input files in BED format and output bedgraph files for visualization in the genome browser. </help> </tool>