Mercurial > repos > yqiancolumbia > ctk_test
diff tag2profile.xml @ 0:0475e4175855 draft default tip
planemo upload commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty
| author | yqiancolumbia |
|---|---|
| date | Mon, 30 Apr 2018 05:25:11 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tag2profile.xml Mon Apr 30 05:25:11 2018 -0400 @@ -0,0 +1,23 @@ +<tool id="tag2profile" name="Generate bedgraph for visualization"> + <description></description> + <command interpreter="perl"> + /home/galaxy/tools/CTK/tag2profile.pl $bigFlag -v $ssFlag -exact -of bedgraph $weight $input $output + </command> + <inputs> + <param name="input" type="data" format="bed" label="Input BED file (.gz file is allowed)"/> + <param name="bigFlag" type="boolean" truevalue="-big" falsevalue="" checked="yes" label="Big file"/> + <param name="ssFlag" type="boolean" truevalue="-ss" falsevalue="" checked="yes" label="Separate strand"/> + <param name="weight" type="boolean" truevalue="-weight" falsevalue="" checked="no" label="Weight counts according to the score of each tag "/> + </inputs> + <outputs> + <data name="output" format="bedgraph" label="Generate bedgraph for visualization on ${on_string}"> + </data> + </outputs> + <help> +.. class:: infomark + +**What this tool does** + +This tool will take as input files in BED format and output bedgraph files for visualization in the genome browser. + </help> +</tool>