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annotate commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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1 [db_config]
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2 user: oinizan
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3 host: pisano
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4 passwd: oinizan
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5 dbname:repet_oinizan
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6
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7 [profil_search]
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8 Evalue: 10
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9 InputFormat: FASTA
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10 ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms
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12 [hmmer_config]
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13 input_file: ./datas/test_input_nt.fa
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14 output_file: ./datas/hmmpfam_output.align
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15 result_dir: /home/oinizan/repet_integration/repet_results
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16 query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel
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17 tmp_dir: /home/oinizan/repet_integration/repet_tmp
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19 [sge_config]
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20 queue: main.q
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21 groupid: fake
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22
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23 [parse_config]
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24 scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py