Mercurial > repos > yufei-luo > s_mart
comparison commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
children |
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30:5677346472b5 | 31:0ab839023fe4 |
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1 [db_config] | |
2 user: oinizan | |
3 host: pisano | |
4 passwd: oinizan | |
5 dbname:repet_oinizan | |
6 | |
7 [profil_search] | |
8 Evalue: 10 | |
9 InputFormat: FASTA | |
10 ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms | |
11 | |
12 [hmmer_config] | |
13 input_file: ./datas/test_input_nt.fa | |
14 output_file: ./datas/hmmpfam_output.align | |
15 result_dir: /home/oinizan/repet_integration/repet_results | |
16 query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel | |
17 tmp_dir: /home/oinizan/repet_integration/repet_tmp | |
18 | |
19 [sge_config] | |
20 queue: main.q | |
21 groupid: fake | |
22 | |
23 [parse_config] | |
24 scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py |