Mercurial > repos > yufei-luo > s_mart
diff commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg Tue Apr 30 14:33:21 2013 -0400 @@ -0,0 +1,24 @@ +[db_config] +user: oinizan +host: pisano +passwd: oinizan +dbname:repet_oinizan + +[profil_search] +Evalue: 10 +InputFormat: FASTA +ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms + +[hmmer_config] +input_file: ./datas/test_input_nt.fa +output_file: ./datas/hmmpfam_output.align +result_dir: /home/oinizan/repet_integration/repet_results +query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel +tmp_dir: /home/oinizan/repet_integration/repet_tmp + +[sge_config] +queue: main.q +groupid: fake + +[parse_config] +scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py