Repository glimmer3
Name: glimmer3
Owner: bgruening
Synopsis: Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/glimmer3/b1ad88bbc5fa
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3
Type: unrestricted
Revision: 2:b1ad88bbc5fa
This revision can be installed: True
Times cloned / installed: 1398
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_numpy_1_7 revision 300877695495 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
biopython 1.61 package
glimmer 3.02b package
GLIMMER_SCRIPT_PATH set_environment

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Predict ORFs in prokaryotic genomes (not knowlegde-based) 0.2 any
0.2 any
Predict ORFs in prokaryotic genomes (knowlegde-based) 0.2 any

Categories
Genome annotation - Tools for annotating genomic information
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis