Repository protein_funcional_analysis_similarities
Name: protein_funcional_analysis_similarities
Owner: fernando
Synopsis: Provides common characteristics among similar proteins.
This tool runs a remote blast against Uniprot/Swissprot database, afterwards the user may choose from the five first aligned sequences and, through the Interpro database, all attributes of these sequences are provided. Finally, the tool obtains certain common attributes (Name; dbxref; GO) of the above mentioned sequences in a gff3 format file.  
Link to this repository: https://toolshed.g2.bx.psu.edu/view/fernando/protein_funcional_analysis_similarities/c342ebb50f0b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/fernando/protein_funcional_analysis_similarities
Type: unrestricted
Revision: 0:c342ebb50f0b
This revision can be installed: True
Times cloned / installed: 313

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Select the most similar sequences 1.0.0 any
Download gff file from InterPro 1.0.0 any
Extraction of common sequences attributes 1.0.0 any
Blast against UniProt/SwissProt database 1.0.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis