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Repository ncbi_blast_plus
Name: ncbi_blast_plus
Owner: devteam
Synopsis: NCBI BLAST+
The NCBI BLAST+ tools find regions of similarity between biological sequences.
The programs compare nucleotide or protein sequences to sequence databases and
calculate the statistical significance.
Content homepage: https://blast.ncbi.nlm.nih.gov/
Development repository: https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/cbf3f518b668
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus
Type: unrestricted
Revision: 35:cbf3f518b668
This revision can be installed: True
Times cloned / installed: 12852

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
low-complexity regions in protein sequences 2.14.1+galaxy2 16.1
Search protein domain database (PSSMs) with translated nucleotide query sequence(s) 2.14.1+galaxy2 16.1
Convert BLAST XML output to tabular 2.14.1+galaxy2 16.1
Search protein database with translated nucleotide query sequence(s) 2.14.1+galaxy2 16.1
masks low complexity regions 2.14.1+galaxy2 16.1
Make BLAST database 2.14.1+galaxy2 16.1
Search protein domain database (PSSMs) with protein query sequence(s) 2.14.1+galaxy2 16.1
Search translated nucleotide database with protein query sequence(s) 2.14.1+galaxy2 16.1
Search protein database with protein query sequence(s) 2.14.1+galaxy2 16.1
Search nucleotide database with nucleotide query sequence(s) 2.14.1+galaxy2 16.1
Show BLAST database information from blastdbcmd 2.14.1+galaxy2 16.1
Search translated nucleotide database with translated nucleotide query sequence(s) 2.14.1+galaxy2 16.1
Make profile database 2.14.1+galaxy2 16.1
2.14.1+galaxy2 16.1
Extract sequence(s) from BLAST database 2.14.1+galaxy2 16.1
Convert masking information in lower-case masked FASTA input to file formats suitable for makeblastdb 2.14.1+galaxy2 16.1

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis