| Snippy finds variants between a haploid reference genome and your NGS sequence reads. It will find both substitutions and insertions/deletions (indels). |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snippy
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. | 4.5.0+galaxy1 | 16.01 | |
| Replace any non-standard sequence characters in snippy 'core.full.aln' file. | 4.5.0+galaxy1 | 16.01 | |
| Combine multiple Snippy outputs into a core SNP alignment | 4.5.0+galaxy1 | 16.01 | |