| Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence. http://infernal.janelia.org/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/infernal
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Search sequences against collections of covariance models | 1.1.4+galaxy0 | 16.01 | |
| Summary statistics for covariance model | 1.1.4+galaxy0 | 16.01 | |
| Search covariance model(s) against a sequence database | 1.1.4+galaxy0 | 16.01 | |
| Prepare a covariance model database for cmscan | 1.1.4+galaxy0 | 16.01 | |
| Build covariance models from sequence alignments | 1.1.4+galaxy0 | 16.01 | |
| Align sequences to a covariance model against a sequence database | 1.1.4+galaxy0 | 16.01 | |