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Repository infernal
Name: infernal
Owner: bgruening
Synopsis: Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities.
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence 
similarities. It is an implementation of a special case of profile stochastic context-free grammars called 
covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and 
RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve 
their secondary structure more than their primary sequence. http://infernal.janelia.org/
Content homepage: http://infernal.janelia.org/
Type: unrestricted
Revision: 7:477d829d3250
This revision can be installed: True
Times cloned / installed: 4338
Dependencies of this repository

Repository msa_datatypes revision 70227007b991 owned by iuc

Contents of this repository

Name Description Version Minimum Galaxy Version
Search sequences against collections of covariance models 1.1.2.0 16.01
Search covariance model(s) against a sequence database 1.1.2.0 16.01
Summary statistics for covariance model 1.1.2.0 16.01
Build covariance models from sequence alignments 1.1.2.0 16.01
Prepare a covariance model database for cmscan 1.1.2.0 16.01
Align sequences to a covariance model against a sequence database 1.1.2.0 16.01

extension type mimetype subclass
cm galaxy.datatypes.infernal:Infernal_CM_1_1

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis