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Repository snippy
Name: snippy
Owner: iuc
Synopsis: Contains the snippy tool for characterising microbial snps
Snippy finds variants between a haploid reference genome and your NGS sequence reads. It will find both substitutions and insertions/deletions (indels).
Clone this repository: hg clone
Type: unrestricted
Revision: 12:fa016f1eea1a
This revision can be installed: True
Times cloned / installed: 1360

Contents of this repository

Name Description Version Minimum Galaxy Version
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. 4.5.0+galaxy1 16.01
Replace any non-standard sequence characters in snippy 'core.full.aln' file. 4.5.0+galaxy1 16.01
Combine multiple Snippy outputs into a core SNP alignment 4.5.0+galaxy1 16.01

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis