|
|
| Name |
Description |
Version |
Minimum Galaxy Version |
|
|
using FIMO |
1.0.0 |
any |
|
|
converter |
1.1.0 |
any |
|
|
FASTA alignment by species |
0.0.0 |
any |
|
|
converts tabular file to FASTA format |
1.1.0 |
any |
|
|
|
1.1 |
any |
|
|
|
1.0.0 |
any |
|
|
for multiple series and graph types |
1.0.1 |
any |
|
|
of two numeric columns |
1.0.0 |
any |
|
|
for multiple columns |
1.0.0 |
any |
|
|
of quality statistics |
1.0.0 |
any |
|
|
of a numeric column |
1.0.3 |
any |
|
|
converter |
1.0.0 |
any |
|
|
expander |
1.0.0 |
any |
|
|
lines that match an expression |
1.0.1 |
any |
|
|
of a dataset |
1.0.0 |
any |
|
|
of selected columns |
1.0.0 |
any |
|
|
from a file |
1.0.0 |
any |
|
|
delimiters to TAB |
1.0.0 |
any |
|
|
Converts an AXT formatted file to a concatenated FASTA alignment |
1.0.0 |
any |
|
|
converter |
1.0.1 |
any |
|
|
between two datasets |
1.0.0 |
any |
|
|
Converts an AXT formatted file to FASTA format |
1.0.0 |
any |
|
|
a column from one Query against another Query |
1.0.0 |
any |
|
|
converter |
1.0.0 |
any |
|
|
consecutive characters |
1.0.0 |
any |
|
|
occurrences of each record |
1.0.0 |
any |
|
|
leading or trailing characters |
0.0.1 |
any |
|
|
tail-to-head |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
converter |
1.0.0 |
any |
|
|
converter |
2.0.0 |
any |
|
|
to find common or distinct rows |
1.0.2 |
any |
|
|
two files side by side |
1.0.0 |
any |
|
|
side by side on a specified field |
2.0.2 |
any |
|
|
Parse a UCSC Gene Table dump |
1.0.0 |
any |
|
|
together |
1.0.1 |
any |
|
|
of a file |
1.0.0 |
any |
|
|
expander |
1.0.0 |
any |
|
|
converter |
1.1.0 |
any |
|
|
Converts a LAV formatted file to BED format |
1.0.0 |
any |
|
|
lines from a dataset |
1.0.0 |
any |
|
|
data in ascending or descending order |
1.0.1 |
any |
|
|
to an existing dataset |
1.0.0 |
any |
|
|
two datasets a specific column of which has the same value |
1.0.0 |
any |
|
|
columns from a table |
1.0.1 |
any |
|
|
Converts an AXT formatted file to LAV format |
1.0.0 |
any |
|
|
lines from a dataset |
1.0.0 |
any |
|
|
as a new dataset |
1.0.0 |
any |
|
|
from GFF data |
1.0.0 |
any |
|
|
using simple expressions |
0.1 |
any |
|
|
using simple expressions |
0.1 |
any |
|
|
|
0.1 |
any |
|
|
in one dataset using Discrete Wavelet Transfoms |
1.0.0 |
any |
|
|
between two datasets using Discrete Wavelet Transfoms |
1.0.0 |
any |
|
|
using Discrete Wavelet Transfoms |
1.0.0 |
any |
|
|
between two datasets using Discrete Wavelet Transfoms |
1.0.0 |
any |
|
|
between two datasets using Discrete Wavelet Transfoms |
1.0.0 |
any |
|
|
- Multiple Em for Motif Elicitation |
1.0.0 |
any |
|
|
Velvet sequence assembler for very short reads |
1.0.0 |
any |
|
|
Prepare a dataset for the Velvet velvetg Assembler |
1.0.0 |
any |
|
|
in data validation |
1.0.0 |
any |
|
|
filter markers, subjects |
1.0.0 |
any |
|
|
and comparisons with HapMap data |
0.3 |
any |
|
|
for testing |
1.0.0 |
any |
|
|
for family data |
1.0.0 |
any |
|
|
genotypes from genomic region |
1.0.0 |
any |
|
|
filter high LD pairs - decrease redundancy |
1.0.0 |
any |
|
|
multiple sequence alignment program for DNA or proteins |
0.1 |
any |
|
|
Pairwise Allele Sharing |
1.0.0 |
any |
|
|
for unrelated subjects |
1.0.0 |
any |
|
|
for p values from an analysis |
1.0.0 |
any |
|
|
generator for fasta (eg Clustal alignments) |
0.4 |
any |
|
|
from linkage format to SNPTEST Marchini files |
1.0.0 |
any |
|
|
Plots for WGA P values |
1.0.3 |
any |
|
|
Marker and Subject measures |
1.0.0 |
any |
|
|
for testing |
0.02 |
any |
|
|
for genotype data |
0.2 |
any |
|
|
using FastQC from Babraham |
0.1 |
any |
|
|
PCA Ancestry using SNP |
1.0.0 |
any |
|
|
region or rs list |
1.0.0 |
any |
|
|
for SOLiD data |
1.0.0 |
any |
|
|
for SOLiD data |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.1 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.1.0 |
any |
|
|
|
1.0.0 |
any |
|
|
compare assembled transcripts to a reference annotation and track Cufflinks transcripts across multiple experiments |
0.0.5 |
any |
|
|
using tracking file |
0.1 |
any |
|
|
De novo assembly of RNA-Seq data |
0.0.1 |
any |
|
|
transcript assembly and FPKM (RPKM) estimates for RNA-Seq data |
0.0.5 |
any |
|
|
find significant changes in transcript expression, splicing, and promoter use |
0.0.5 |
any |
|
|
LASSO-Patternsearch algorithm |
1.0.0 |
any |
|
|
significant single- and multi-locus SNP associations in case-control studies |
1.0.0 |
any |
|
|
significant SNPs in case-control data |
1.0.0 |
any |
|
|
analysis of chemicals, diseases, or genes |
1.0.0 |
any |
|
|
significant single-SNP associations in case-control studies |
1.0.0 |
any |
|
|
linkage disequilibrium and tag SNPs |
1.0.0 |
any |
|
|
visualization of genomic data with the Hilbert curve |
1.0.0 |
any |
|
|
functional annotation for a list of genes |
1.0.0 |
any |
|
|
significant transcription factor binding sites from ChIP data |
1.0.0 |
any |
|
|
Bayesian genetic variant detector |
0.5.0 |
any |
|
|
tools for functional profiling of gene lists |
1.0.0 |
any |
|
|
an interval file |
1.0.0 |
any |
|
|
SOLiD output to fastq |
1.0.0 |
any |
|
|
converts SOLiD data to FASTQ data |
1.0.0 |
any |
|
|
converts any FASTQ to Sanger |
1.0.0 |
any |
|
|
converts between FASTQ data and other data formats |
1.0.0 |
any |
|
|
on a BED file |
1.0.1 |
any |
|
|
on GeneTrack index |
1.0.0 |
any |
|
|
|
0.2.0 |
any |
|
|
for targeted resequencing data |
0.01 |
any |
|
|
|
0.2.0 |
any |
|
|
|
0.2.0 |
any |
|
|
|
0.01 |
any |
|
|
for paired data |
0.2.0 |
any |
|
|
for PAIRED data |
0.3.0 |
any |
|
|
|
0.01 |
any |
|
|
|
0.01 |
any |
|
|
converts BAM format to SAM format |
1.0.3 |
any |
|
|
provides simple stats on BAM files |
1.0.0 |
any |
|
|
on coverage and SNPs |
1.0.2 |
any |
|
|
condenses pileup format into ranges of bases |
1.0.0 |
any |
|
|
on bitwise flag values |
1.0.0 |
any |
|
|
to interval |
1.0.1 |
any |
|
|
merges BAM files together |
1.1.2 |
any |
|
|
records from a file |
1.0.0 |
any |
|
|
with sorting and clustering) |
1.0.0 |
any |
|
|
distribution |
1.0.0 |
any |
|
|
using max entropy model |
1.0.0 |
any |
|
|
converter and read extender |
1.0.0 |
any |
|
|
average interval coverage |
1.0.0 |
any |
|
|
convert SRA to FASTQ |
1.0.0 |
any |
|
|
using FIMO |
1.0.0 |
any |
|
|
preserving mono-nucleotide frequency |
1.0.0 |
any |
|
|
from BED or BAM |
1.0.0 |
any |
|
|
lines |
1.0.0 |
any |
|
|
from summary counts |
1.0.0 |
any |
|
|
of DNA sequence |
1.0.0 |
any |
|
|
between two files of genomic intervals |
1.0.0 |
any |
|
|
preserving dinucleotide frequency |
1.0.0 |
any |
|
|
of numeric columns |
1.0.0 |
any |
|
|
of MEME motif |
1.0.0 |
any |
|
|
features |
1.0.0 |
any |
|
|
to ucsc |
1.0.0 |
any |
|
|
short motif discovery |
1.0.0 |
any |
|
|
of DNA/RNA sequences |
1.0.0 |
any |
|
|
find closest features |
1.0.0 |
any |
|
|
for intervals |
1.0.0 |
any |
|
|
intersect two interval sets |
1.0.0 |
any |
|
|
convert FIMO output to BED |
1.0.0 |
any |
|
|
of UTR coverage |
1.0.0 |
any |
|
|
using FIMO |
1.0.0 |
any |
|
|
from fasta file |
1.0.0 |
any |
|
|
files |
1.0.0 |
any |
|
|
a interval file by chr and start |
1.0.0 |
any |
|
|
weight chromosome by length |
1.0.0 |
any |
|
|
from one sequence |
1.0.0 |
any |
|
|
of a file |
1.0.0 |
any |
|
|
intervals |
1.0.0 |
any |
|
|
motif discovery |
1.0.0 |
any |
|
|
of align output |
1.0.0 |
any |
|
|
features |
1.0.0 |
any |
|
|
chromosome not weighted by length |
1.0.0 |
any |
|
|
intervals |
1.0.0 |
any |
|
|
of two interval sets |
1.0.0 |
any |
|
|
convert BED or GFF or VCF to BAM |
1.0.0 |
any |
|
|
plot of multiple numeric columns |
1.0.0 |
any |
|
|
from bigwig |
1.0.0 |
any |
|
|
plot and correlation |
1.0.0 |
any |
|
|
of two interval lists |
1.0.0 |
any |
|
|
phastCons or phyloP,vertebrate30way |
1.0.0 |
any |
|
|
around interval center |
1.0.0 |
any |
|
|
from bigwig (allow extension) |
1.0.0 |
any |
|
|
remove off-chromosome lines |
1.0.0 |
any |
|
|
plot of two columns from two files |
1.0.0 |
any |
|
|
plot of two columns |
1.0.0 |
any |
|
|
and prediction with EpiGRAPH |
1.0.0 |
any |
|
|
and prediction with EpiGRAPH Test |
1.0.0 |
any |
|
|
Statistical approach for the Identification of ChIP-Enriched Regions |
0.0.1 |
any |
|
|
Model-based Analysis of ChIP-Seq |
1.0.1 |
any |
|
|
Calculate common measures of assembly quality |
1.0.0 |
any |
|
|
Produce filtered reads from a set of PacBio primary analysis outputs. |
1.0.0 |
any |
|
|
Assemble contigs from a set of contigs and PacBio reads. |
1.0.0 |
any |
|
|
Short-read de Bruijn assembly |
1.0.0 |
any |
|
|
Short-read de novo assembly |
1.0.0 |
any |
|
|
Quality-aware error correction for paired-end reads |
1.0.0 |
any |
|
|
Quality-aware error correction |
1.0.0 |
any |
|
|
on paired end reads |
1.0.0 |
any |
|
|
reads on various attributes |
1.0.1 |
any |
|
|
on paired end reads |
1.1 |
any |
|
|
converter |
1.0.0 |
any |
|
|
reads by quality score and length |
1.0.0 |
any |
|
|
by column |
1.0.0 |
any |
|
|
on joined paired end reads |
1.0.0 |
any |
|
|
by column |
1.0.0 |
any |
|
|
by quality score |
1.0.0 |
any |
|
|
into FASTQ |
1.0.1 |
any |
|
|
converter |
1.1.0 |
any |
|
|
by sliding window |
1.0.0 |
any |
|
|
convert between various FASTQ quality formats |
1.0.4 |
any |
|
|
converter |
1.0.0 |
any |
|
|
on paired end reads |
1.1 |
any |
|
|
|
1.0.0 |
any |
|
|
from pair-wise alignments |
1.0.0 |
any |
|
|
from a chromosome indels file |
1.0.0 |
any |
|
|
based on multiple simultaneous tests p-values |
1.0.1 |
any |
|
|
|
2.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
from pairwise alignments |
1.0.0 |
any |
|
|
motif by motif |
1.0.0 |
any |
|
|
for non-coding regions |
1.0.0 |
any |
|
|
for different categories and different criteria |
1.0.0 |
any |
|
|
and causal mutational mechanisms from previously identified orthologous microsatellite sets |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
satisfying criteria |
1.0.0 |
any |
|
|
from MAF file |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
in indel flanking regions |
1.0.0 |
any |
|
|
|
1.0.1 |
any |
|
|
from 3-way alignments |
1.0.3 |
any |
|
|
|
1.0.0 |
any |
|
|
by specified attributes |
1.1.0 |
any |
|
|
from pairwise alignments |
1.0.0 |
any |
|
|
based on quality scores |
1.0.1 |
any |
|
|
for 3-way alignments |
1.0.0 |
any |
|
|
for multiple (>2) species alignments |
1.0.1 |
any |
|
|
Linear Discriminant Analysis |
1.0.1 |
any |
|
|
data on any column using simple expressions |
1.1.0 |
any |
|
|
on "Perform LDA" output |
1.0.1 |
any |
|
|
between any two numeric columns |
1.0.0 |
any |
|
|
for any numerical column |
1.1.0 |
any |
|
|
converter |
1.0.0 |
any |
|
|
for numeric columns |
1.0.0 |
any |
|
|
|
0.1 |
any |
|
|
an expression on every row |
1.1.0 |
any |
|
|
in polymorphism datasets |
1.0.0 |
any |
|
|
data by a column and perform aggregate operation on other columns. |
2.0.0 |
any |
|
|
for using PC and LDA |
1.0.0 |
any |
|
|
Calculates DNA RNA/DNA melting temperature |
5.0.0 |
any |
|
|
Replace or delete sequence sections |
5.0.0 |
any |
|
|
Displays protein hydropathy of a set of sequences |
5.0.0 |
any |
|
|
Looks for tandem repeats in a nucleotide sequence |
5.0.0 |
any |
|
|
Align EST and genomic DNA sequences |
5.0.0 |
any |
|
|
Report nucleic acid binding motifs |
5.0.0 |
any |
|
|
Protein pattern search |
5.0.0 |
any |
|
|
Finds siRNA duplexes in mRNA |
5.0.0 |
any |
|
|
Strips out DNA between a pair of vector sequences |
5.0.0 |
any |
|
|
Plot quality of conservation of a sequence alignment |
5.0.0 |
any |
|
|
CAI codon adaptation index |
5.0.0 |
any |
|
|
Report CpG rich areas |
5.0.0 |
any |
|
|
Displays proteins as a helical net |
5.0.0 |
any |
|
|
Removes a specified section from a sequence |
5.0.0 |
any |
|
|
Predicts potentially antigenic regions of a protein sequence, using the method of Kolaskar and Tongaonkar. |
5.0.0 |
any |
|
|
Displays a thresholded dotplot of two sequences |
5.0.0 |
any |
|
|
Show features of a sequence |
5.0.0 |
any |
|
|
Search a protein sequence with a motif |
5.0.0 |
any |
|
|
Displays some simple information about sequences |
5.0.0 |
any |
|
|
Wobble base plot |
5.0.0 |
any |
|
|
Protein charge plot |
5.0.0 |
any |
|
|
Plot CpG rich areas |
5.0.0 |
any |
|
|
Bending and curvature plot in B-DNA |
5.0.0 |
any |
|
|
Regular expression search of a protein sequence |
5.0.0 |
any |
|
|
Calculates the isoelectric point of a protein |
5.0.0 |
any |
|
|
Insert one sequence into another |
5.0.0 |
any |
|
|
Align nucleic coding regions given the aligned proteins |
5.0.0 |
any |
|
|
Protein proteolytic enzyme or reagent cleavage digest |
5.0.0 |
any |
|
|
Display a DNA sequence with 6-frame translation and ORFs |
5.0.0 |
any |
|
|
Find protein sequence regions with a biased composition |
5.0.0 |
any |
|
|
Extract features from a sequence |
5.0.0 |
any |
|
|
All-against-all comparison of a set of sequences |
5.0.0 |
any |
|
|
Finds the best local alignments between two sequences |
5.0.0 |
any |
|
|
Codon usage table comparison |
5.0.0 |
any |
|
|
Back translate a protein sequence |
5.0.0 |
any |
|
|
Nucleic acid pattern search |
5.0.1 |
any |
|
|
Extract regions from a sequence |
5.0.0 |
any |
|
|
Create a codon usage table |
5.0.0 |
any |
|
|
Displays aligned sequences, with colouring and boxing |
5.0.0 |
any |
|
|
Reads and writes sequences |
5.0.0 |
any |
|
|
Displays all-against-all dotplots of a set of sequences |
5.0.0 |
any |
|
|
Finds DNA inverted repeats |
5.0.0 |
any |
|
|
Translate nucleic acid sequences |
5.0.0 |
any |
|
|
Count composition of dimer/trimer/etc words in a sequence |
5.0.0 |
any |
|
|
Finds MAR/SAR sites in nucleic sequences |
5.0.0 |
any |
|
|
Find differences between nearly identical sequences |
5.0.0 |
any |
|
|
Shuffles a set of sequences maintaining composition |
5.0.0 |
any |
|
|
Writes one sequence from a multiple set of sequences |
5.0.0 |
any |
|
|
Mask off features of a sequence |
5.0.0 |
any |
|
|
Finds neighbouring pairs of features in sequences |
5.0.0 |
any |
|
|
Codon usage statistics |
5.0.0 |
any |
|
|
Displays protein hydropathy |
5.0.0 |
any |
|
|
Plots isochores in large DNA sequences |
5.0.0 |
any |
|
|
Reports STOP codons and ORF statistics of a protein |
5.0.0 |
any |
|
|
Exclude a set of sequences and write out the remaining ones |
5.0.0 |
any |
|
|
Finds tandem repeats |
5.0.0 |
any |
|
|
Reports all CpG rich regions |
5.0.0 |
any |
|
|
Create a chaos game representation plot for a sequence |
5.0.0 |
any |
|
|
Non-overlapping wordmatch dotplot of two sequences |
5.0.0 |
any |
|
|
Alter the name or description of a sequence |
5.0.0 |
any |
|
|
Split a sequence into (overlapping) smaller sequences |
5.0.0 |
any |
|
|
Smith-Waterman local alignment |
5.0.0 |
any |
|
|
Finds PEST motifs as potential proteolytic cleavage sites |
5.0.0 |
any |
|
|
Mask off regions of a sequence |
5.0.0 |
any |
|
|
Mutate sequence beyond all recognition |
5.0.0 |
any |
|
|
Displays membrane spanning regions |
5.0.0 |
any |
|
|
Looks for inverted repeats in a nucleotide sequence |
5.0.0 |
any |
|
|
Synonymous codon usage Gribskov statistic plot |
5.0.0 |
any |
|
|
Reads sequence fragments and builds one sequence |
5.0.0 |
any |
|
|
Draws linear maps of DNA constructs |
5.0.0 |
any |
|
|
Predicts protein secondary structure |
5.0.0 |
any |
|
|
Predicts coiled coil regions |
5.0.0 |
any |
|
|
Search sequence documentation. Slow, use SRS and Entrez! |
5.0.0 |
any |
|
|
Output sequence with translated ranges |
5.0.0 |
any |
|
|
Calculates fractional GC content of nucleic acid sequences |
5.0.0 |
any |
|
|
CAI codon adaptation index using custom codon usage file |
5.0.0 |
any |
|
|
Shows protein sequences as helices |
5.0.0 |
any |
|
|
Merge two overlapping nucleic acid sequences |
5.0.0 |
any |
|
|
Displays a wordmatch dotplot of two sequences |
5.0.0 |
any |
|
|
Displays protein hydropathy |
5.0.0 |
any |
|
|
Extract CDS, mRNA and translations from feature tables |
5.0.0 |
any |
|
|
Plots simple amino acid properties in parallel |
5.0.0 |
any |
|
|
Finds all exact matches of a given size between 2 sequences |
5.0.0 |
any |
|
|
Finds and extracts open reading frames (ORFs) |
5.0.0 |
any |
|
|
Residue/base frequency table or plot |
5.0.0 |
any |
|
|
Regular expression search of a nucleotide sequence |
5.0.0 |
any |
|
|
Fickett TESTCODE statistic to identify protein-coding DNA |
5.0.0 |
any |
|
|
Reports CpG rich region |
5.0.0 |
any |
|
|
Protein pattern search after translation |
5.0.0 |
any |
|
|
Needleman-Wunsch global alignment |
5.0.0 |
any |
|
|
Merge two large overlapping nucleic acid sequences |
5.0.0 |
any |
|
|
Trim ambiguous bits off the ends of sequences |
5.0.0 |
any |
|
|
Removes carriage return from ASCII files |
5.0.0 |
any |
|
|
Searches DNA sequences for matches with primer pairs |
5.0.0 |
any |
|
|
Counts words of a specified size in a DNA sequence |
5.0.0 |
any |
|
|
Draws circular maps of DNA constructs |
5.0.0 |
any |
|
|
Type in a short new sequence |
5.0.0 |
any |
|
|
Plot potential open reading frames |
5.0.0 |
any |
|
|
Calculates the twisting in a B-DNA sequence |
5.0.0 |
any |
|
|
Reverse and complement a sequence |
5.0.0 |
any |
|
|
Removes gap characters from sequences |
5.0.0 |
any |
|
|
Match large sequences against one or more other sequences |
5.0.0 |
any |
|
|
Reads and writes sequences, skipping first few |
5.0.0 |
any |
|
|
Hydrophobic moment calculation |
5.0.0 |
any |
|
|
Reports protein signal cleavage sites |
5.0.0 |
any |
|
|
Trim poly-A tails off EST sequences |
5.0.0 |
any |
|
|
Protein statistics |
5.0.0 |
any |
|
|
Builder |
1.0.0 |
any |
|
|
Estimation |
1.0.0 |
any |
|
|
Estimation |
1.0.0 |
any |
|
|
reads from a specified region |
1.0.0 |
any |
|
|
a VCF file |
1.0.0 |
any |
|
|
Generate the intersection of two VCF files |
1.0.0 |
any |
|
|
a VCF file (dbSNP, hapmap) |
1.0.0 |
any |
|
|
- perform local realignment |
0.0.1 |
any |
|
|
Convert BLAST XML output to tabular |
0.0.8 |
any |
|
|
for UCSC genome browser |
1.0.0 |
any |
|
|
Pairwise Alignment Viewer |
1.0.0 |
any |
|
|
Multiple Alignment Viewer |
2.0.1 |
any |
|
|
|
1.0.0 |
any |
|
|
with SNPs |
1.0.0 |
any |
|
|
for Solexa file |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
for SAM |
1.0.0 |
any |
|
|
for combining indel interval data |
1.0.0 |
any |
|
|
from SAM |
1.0.0 |
any |
|
|
using coordinates from assembled/unassembled genomes |
2.2.2 |
any |
|
|
(PSU prepared queries) |
1.0.0 |
any |
|
|
stored locally |
1.0.0 |
any |
|
|
table browser |
1.0.0 |
any |
|
|
Central server |
1.0.1 |
any |
|
|
|
1.0.0 |
any |
|
|
HapMap Biomart |
0.0.01 |
any |
|
|
from your computer |
1.1.3 |
any |
|
|
server |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
rice mart |
1.0.1 |
any |
|
|
server |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
Central server |
1.0.1 |
any |
|
|
test server |
1.0.0 |
any |
|
|
Human Hemoglobin Variants and Thalassemias |
1.0.0 |
any |
|
|
at NHGRI |
1.0.0 |
any |
|
|
test server |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
browser |
1.0.0 |
any |
|
|
table browser |
1.0.0 |
any |
|
|
creates a bed or xbed file containing from text query |
1.0.0 |
any |
|
|
echoes parameters |
1.0.0 |
any |
|
|
table browser |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
Test server |
1.0.1 |
any |
|
|
server |
1.0.0 |
any |
|
|
table browser proxy |
1.0.0 |
any |
|
|
table browser |
1.0.0 |
any |
|
|
table browser proxy |
1.0.0 |
any |
|
|
server |
1.0.0 |
any |
|
|
convert BED or GFF or VCF to BAM |
1.0.0 |
any |
|
|
Converts a MAF formatted file to the Interval format |
1.0.0 |
any |
|
|
Converts a MAF formatted file to FASTA format |
1.0.1 |
any |
|
|
given a set of block numbers and a MAF file |
1.0.1 |
any |
|
|
by Size |
1.0.1 |
any |
|
|
by specified attributes |
1.0.1 |
any |
|
|
by Species |
1.0.0 |
any |
|
|
by Species |
1.0.0 |
any |
|
|
Converts a MAF formatted file to the BED format |
1.0.0 |
any |
|
|
by Species |
1.0.0 |
any |
|
|
for display at UCSC |
1.0.0 |
any |
|
|
a MAF file |
1.0.1 |
any |
|
|
text |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
columns from files |
1.0.0 |
any |
|
|
two files |
1.0.0 |
any |
|
|
by word list |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
of a file |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
in wiggle format |
1.0.0 |
any |
|
|
to Nucleotides |
1.0.0 |
any |
|
|
reads mapping against reference sequence |
1.0.0 |
any |
|
|
compare sequencing reads against UCSC genome builds |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
extracts sequences and quality scores from FASTQSOLEXA data |
1.0.0 |
any |
|
|
the percentage of reads supporting each nucleotide at each location |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
of high quality score reads |
1.0.0 |
any |
|
|
reads mapping against reference sequence |
1.0.0 |
any |
|
|
as UCSC custom track |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.2 |
any |
|
|
the intervals of two datasets |
1.0.0 |
any |
|
|
of a set of intervals on second set of intervals |
1.0.0 |
any |
|
|
|
1.1.0 |
any |
|
|
on tables |
1.0.0 |
any |
|
|
for every interval |
4.0.1 |
any |
|
|
the overlapping intervals of a dataset |
1.0.0 |
any |
|
|
of all intervals |
1.0.0 |
any |
|
|
returns flanking region/s for every gene |
1.0.0 |
any |
|
|
two datasets into one dataset |
1.0.0 |
any |
|
|
the intervals of two datasets side-by-side |
1.0.0 |
any |
|
|
the intervals of a dataset |
1.0.0 |
any |
|
|
the intervals of two datasets |
1.0.0 |
any |
|
|
intervals of a dataset |
1.0.0 |
any |
|
|
from another dataset |
1.0.0 |
any |
|
|
converter |
1.0.0 |
any |
|
|
sequences |
1.0.0 |
any |
|
|
formatter |
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.2 |
any |
|
|
|
1.0.0 |
any |
|
|
|
1.0.0 |
any |