|
4
|
1
|
|
|
2 SUMMARISING RUN PARAMETERS
|
|
|
3 ==========================
|
|
|
4 Input filename: ./input_singles
|
|
|
5 Trimming mode: single-end
|
|
|
6 Trim Galore version: 0.3.7
|
|
|
7 Quality Phred score cutoff: 20
|
|
|
8 Quality encoding type selected: ASCII+33
|
|
|
9 Adapter sequence: 'AGATCGGAAGAGC'
|
|
|
10 Maximum trimming error rate: 0.1 (default)
|
|
|
11 Minimum required adapter overlap (stringency): 1 bp
|
|
|
12 Minimum required sequence length before a sequence gets removed: 20 bp
|
|
|
13
|
|
|
14
|
|
|
15 cutadapt version 1.1
|
|
|
16 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_singles
|
|
|
17 Maximum error rate: 10.00%
|
|
|
18 Processed reads: 2
|
|
|
19 Trimmed reads: 1 ( 50.0%)
|
|
|
20 Total basepairs: 168 (0.0 Mbp)
|
|
|
21 Trimmed basepairs: 1 (0.0 Mbp) (0.60% of total)
|
|
|
22 Too short reads: 0 ( 0.0% of processed reads)
|
|
|
23 Too long reads: 0 ( 0.0% of processed reads)
|
|
|
24 Total time: 0.00 s
|
|
|
25 Time per read: 0.32 ms
|
|
|
26
|
|
|
27 === Adapter 1 ===
|
|
|
28
|
|
|
29 Adapter 'AGATCGGAAGAGC', length 13, was trimmed 1 times.
|
|
|
30
|
|
|
31 Lengths of removed sequences
|
|
|
32 length count expected
|
|
|
33 1 1 0.5
|
|
|
34
|
|
|
35
|
|
|
36 RUN STATISTICS FOR INPUT FILE: ./input_singles
|
|
|
37 =============================================
|
|
|
38 2 sequences processed in total
|
|
|
39 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)
|
|
|
40
|
