Mercurial > repos > iuc > package_tophat_2_0_14

annotate tool_dependencies.xml @ 4:b13271391f95 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
author iuc
date Fri, 06 Nov 2015 16:30:31 -0500
parents 536f7bb5616d
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="tophat" version="2.0.14">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions architecture="x86_64" os="linux">
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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536f7bb5616d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit 93bd8341966e13b91bbcb2b9bce75f0c0e7e1d92
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12 <action type="shell_command">sed -i.bak 's#/build/dest#$INSTALL_DIR#' $INSTALL_DIR/bin/tophat2</action>
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13 </actions>
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b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
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14 <actions architecture="x86_64" os="darwin">
b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
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15 <action type="download_by_url">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.OSX_x86_64.tar.gz</action>
b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
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16 <action type="move_directory_files">
b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
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17 <source_directory>.</source_directory>
b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
iuc
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18 <destination_directory>$INSTALL_DIR</destination_directory>
b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
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19 </action>
b13271391f95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
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20 </actions>
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21 <actions>
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22 <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.tar.gz</action>
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23 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
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24 <action type="make_install" />
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25 </actions>
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26 <action type="set_environment">
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27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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28 </action>
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29 </actions_group>
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30 </install>
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31 <readme />
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32 </package>
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33 </tool_dependency>