annotate test-data/output_file2.tabular @ 16:6bd9ef49d013 draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit dfaab79252a858e8df16bbea3607ebf1b6962e5a

Values from family size distribution with all datasets

Family size	Test_data	Test_data2	Test_data3
FS=1	63	63	63	
FS=2	5	5	5	
FS=3	8	8	8	
FS=4	10	10	10	
FS=5	3	3	3	
FS=6	5	5	5	
FS=7	3	3	3	
FS=8	3	3	3	
FS=9	2	2	2	
FS=10	3	3	3	
FS=11	1	1	1	
FS=12	6	6	6	
sum	112	112	112	
Dataset:	Test_data
max. family size:	13
absolute frequency:	3
relative frequency:	0.027

	singletons:		family size > 20:
	absolute nr.	rel. freq	absolute nr.	rel. freq	total length
Test_data	63	0.562	6	0.054	112

The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
Whereas the total frequencies were calculated from the whole dataset (=including the DCS).

FS >= 1		unique:	total:
nr./rel. freq of ab=	47	0.431	0.420
nr./rel. freq of ba=	59	0.488	0.476
nr./rel. freq of DCS (total)=	3 (6)	0.028	0.027 (0.054)
length of dataset=	109	109	112
FS >= 3		unique:	total:
nr./rel. freq of ab=	14	0.341	0.318
nr./rel. freq of ba=	26	0.491	0.464
nr./rel. freq of DCS (total)=	1 (2)	0.037	0.023 (0.045)
length of dataset=	41	41	44

Values from family size distribution
	duplex	ab	ba	sum
FS=1	2	30	31	63
FS=2	0	3	2	5
FS=3	0	3	5	8
FS=4	2	3	5	10
FS=5	0	2	1	3
FS=6	0	1	4	5
FS=7	0	1	2	3
FS=8	0	1	2	3
FS=9	0	0	2	2
FS=10	1	1	1	3
FS=11	0	0	1	1
FS=12	1	2	3	6

Dataset:	Test_data2
max. family size:	13
absolute frequency:	3
relative frequency:	0.027

	singletons:		family size > 20:
	absolute nr.	rel. freq	absolute nr.	rel. freq	total length
Test_data2	63	0.562	6	0.054	112

The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
Whereas the total frequencies were calculated from the whole dataset (=including the DCS).

FS >= 1		unique:	total:
nr./rel. freq of ab=	47	0.431	0.420
nr./rel. freq of ba=	59	0.488	0.476
nr./rel. freq of DCS (total)=	3 (6)	0.028	0.027 (0.054)
length of dataset=	109	109	112
FS >= 3		unique:	total:
nr./rel. freq of ab=	14	0.341	0.318
nr./rel. freq of ba=	26	0.491	0.464
nr./rel. freq of DCS (total)=	1 (2)	0.037	0.023 (0.045)
length of dataset=	41	41	44

Values from family size distribution
	duplex	ab	ba	sum
FS=1	2	30	31	63
FS=2	0	3	2	5
FS=3	0	3	5	8
FS=4	2	3	5	10
FS=5	0	2	1	3
FS=6	0	1	4	5
FS=7	0	1	2	3
FS=8	0	1	2	3
FS=9	0	0	2	2
FS=10	1	1	1	3
FS=11	0	0	1	1
FS=12	1	2	3	6

Dataset:	Test_data3
max. family size:	13
absolute frequency:	3
relative frequency:	0.027

	singletons:		family size > 20:
	absolute nr.	rel. freq	absolute nr.	rel. freq	total length
Test_data3	63	0.562	6	0.054	112

The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
Whereas the total frequencies were calculated from the whole dataset (=including the DCS).

FS >= 1		unique:	total:
nr./rel. freq of ab=	47	0.431	0.420
nr./rel. freq of ba=	59	0.488	0.476
nr./rel. freq of DCS (total)=	3 (6)	0.028	0.027 (0.054)
length of dataset=	109	109	112
FS >= 3		unique:	total:
nr./rel. freq of ab=	14	0.341	0.318
nr./rel. freq of ba=	26	0.491	0.464
nr./rel. freq of DCS (total)=	1 (2)	0.037	0.023 (0.045)
length of dataset=	41	41	44

Values from family size distribution
	duplex	ab	ba	sum
FS=1	2	30	31	63
FS=2	0	3	2	5
FS=3	0	3	5	8
FS=4	2	3	5	10
FS=5	0	2	1	3
FS=6	0	1	4	5
FS=7	0	1	2	3
FS=8	0	1	2	3
FS=9	0	0	2	2
FS=10	1	1	1	3
FS=11	0	0	1	1
FS=12	1	2	3	6