Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/tests/test_http_input.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/tests/test_http_input.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,27 @@ +import os +from pathlib import Path +from typing import List + +from cwltool.pathmapper import PathMapper +from cwltool.utils import CWLObjectType + + +def test_http_path_mapping(tmp_path: Path) -> None: + + input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta" + base_file: List[CWLObjectType] = [ + { + "class": "File", + "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta", + "basename": "chr20.fa", + } + ] + pathmap = PathMapper(base_file, os.getcwd(), str(tmp_path))._pathmap + + assert input_file_path in pathmap + assert os.path.exists(pathmap[input_file_path].resolved) + + with open(pathmap[input_file_path].resolved) as file: + contents = file.read() + + assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents