Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/cwltool/tests/test_http_input.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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import os from pathlib import Path from typing import List from cwltool.pathmapper import PathMapper from cwltool.utils import CWLObjectType def test_http_path_mapping(tmp_path: Path) -> None: input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta" base_file: List[CWLObjectType] = [ { "class": "File", "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta", "basename": "chr20.fa", } ] pathmap = PathMapper(base_file, os.getcwd(), str(tmp_path))._pathmap assert input_file_path in pathmap assert os.path.exists(pathmap[input_file_path].resolved) with open(pathmap[input_file_path].resolved) as file: contents = file.read() assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents