annotate GRsetFromGEO/GRsetFromGEO.R @ 56:d7cf4a35f827 draft

Uploaded
author testtool
date Thu, 10 Aug 2017 06:42:47 -0400
parents e23909ae6676
children 2382697aad09
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
56
d7cf4a35f827 Uploaded
testtool
parents: 55
diff changeset
1 require(minfi, quietly = TRUE)
d7cf4a35f827 Uploaded
testtool
parents: 55
diff changeset
2
5
7511130b5068 Uploaded
testtool
parents:
diff changeset
3 options(warn = -1)
7511130b5068 Uploaded
testtool
parents:
diff changeset
4
7511130b5068 Uploaded
testtool
parents:
diff changeset
5 args <- commandArgs(trailingOnly = TRUE)
16
ceaf71c74547 Uploaded
testtool
parents: 14
diff changeset
6 input = args[1]
5
7511130b5068 Uploaded
testtool
parents:
diff changeset
7 output = args[2]
39
05f6acc80f47 Uploaded
testtool
parents: 38
diff changeset
8
56
d7cf4a35f827 Uploaded
testtool
parents: 55
diff changeset
9 GRset <- getGenomicRatioSetFromGEO(input)
5
7511130b5068 Uploaded
testtool
parents:
diff changeset
10
7511130b5068 Uploaded
testtool
parents:
diff changeset
11 save(GRset,file = output)
38
88d2c717105e Uploaded
testtool
parents: 33
diff changeset
12
54
5752f23e451f Uploaded
testtool
parents: 42
diff changeset
13