| HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). http://hmmer.janelia.org/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hmmer3
| Repository package_hmmer_3_1b1 revision ee143f73fee0 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| hmmer | 3.1b1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| convert profile file to a HMMER format | 0.1.0 | any | |
| search profile(s) against a sequence database | 0.1.0 | any | |
| retrieve profile HMM(s) from a file | 0.1.0 | any | |
| align sequences to a profile HMM | 0.1.0 | any | |
| append modelmask line to a multiple sequence alignments | 0.1.0 | any | |
| iteratively search a protein sequence against a protein database (PSIBLAST-like) | 0.1.0 | any | |
| Build a profile HMM from an input multiple alignment | 0.1.0 | any | |
| search a protein sequence against a protein database (BLASTP-like) | 0.1.0 | any | |
| search a DNA model or alignment against a DNA database (BLASTN-like) | 0.1.0 | any | |
| sample sequence(s) from a profile HMM | 0.1.0 | any | |
| search DNA sequence(s) against a DNA profile database | 0.1.0 | any | |
| search sequence(s) against a profile database | 0.1.0 | any | |