Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository hmmer3
Name: hmmer3
Owner: iuc
Synopsis: HMM based sequence alignment and database search tool
HMMER is used for searching sequence databases for homologs of protein
sequences, and for making protein sequence alignments. It implements
methods using probabilistic models called profile hidden Markov models
(profile HMMs).

http://hmmer.janelia.org/
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hmmer3
Type: unrestricted
Revision: 2:54b6b4d0613a
This revision can be installed: True
Times cloned / installed: 551
Dependencies of this repository

Repository package_hmmer_3_1b1 revision ee143f73fee0 owned by iuc

Name Version Type
hmmer 3.1b1 package

Contents of this repository

Name Description Version Minimum Galaxy Version
convert profile file to a HMMER format 0.1.0 any
search profile(s) against a sequence database 0.1.0 any
retrieve profile HMM(s) from a file 0.1.0 any
align sequences to a profile HMM 0.1.0 any
append modelmask line to a multiple sequence alignments 0.1.0 any
iteratively search a protein sequence against a protein database (PSIBLAST-like) 0.1.0 any
Build a profile HMM from an input multiple alignment 0.1.0 any
search a protein sequence against a protein database (BLASTP-like) 0.1.0 any
search a DNA model or alignment against a DNA database (BLASTN-like) 0.1.0 any
sample sequence(s) from a profile HMM 0.1.0 any
search DNA sequence(s) against a DNA profile database 0.1.0 any
search sequence(s) against a profile database 0.1.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis